Strain Fitness in Variovorax sp. OAS795 around ABID97_RS03005

Experiment: Glucuronamide (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS02995 and ABID97_RS03000 are separated by 3 nucleotidesABID97_RS03000 and ABID97_RS03005 are separated by 54 nucleotidesABID97_RS03005 and ABID97_RS03010 are separated by 106 nucleotides ABID97_RS02995: ABID97_RS02995 - cell division topological specificity factor MinE, at 607,627 to 607,905 _RS02995 ABID97_RS03000: ABID97_RS03000 - septum site-determining protein MinD, at 607,909 to 608,724 _RS03000 ABID97_RS03005: ABID97_RS03005 - septum site-determining protein MinC, at 608,779 to 609,552 _RS03005 ABID97_RS03010: ABID97_RS03010 - solute carrier family 23 protein, at 609,659 to 610,960 _RS03010 Position (kb) 608 609 610Strain fitness (log2 ratio) -2 -1 0 1 2at 608.009 kb on + strand, within ABID97_RS03000at 608.009 kb on + strand, within ABID97_RS03000at 608.010 kb on - strand, within ABID97_RS03000at 608.177 kb on + strand, within ABID97_RS03000at 608.177 kb on + strand, within ABID97_RS03000at 608.177 kb on + strand, within ABID97_RS03000at 608.177 kb on + strand, within ABID97_RS03000at 608.284 kb on + strand, within ABID97_RS03000at 608.285 kb on - strand, within ABID97_RS03000at 608.378 kb on + strand, within ABID97_RS03000at 608.378 kb on + strand, within ABID97_RS03000at 608.379 kb on - strand, within ABID97_RS03000at 608.379 kb on - strand, within ABID97_RS03000at 608.379 kb on - strand, within ABID97_RS03000at 608.379 kb on - strand, within ABID97_RS03000at 608.552 kb on + strand, within ABID97_RS03000at 608.552 kb on + strand, within ABID97_RS03000at 608.553 kb on - strand, within ABID97_RS03000at 608.553 kb on - strand, within ABID97_RS03000at 608.553 kb on - strand, within ABID97_RS03000at 608.553 kb on - strand, within ABID97_RS03000at 608.553 kb on - strand, within ABID97_RS03000at 608.818 kb on + strandat 608.819 kb on - strandat 608.819 kb on - strandat 608.819 kb on - strandat 608.873 kb on + strand, within ABID97_RS03005at 608.873 kb on + strand, within ABID97_RS03005at 608.873 kb on + strand, within ABID97_RS03005at 608.873 kb on + strand, within ABID97_RS03005at 608.873 kb on + strand, within ABID97_RS03005at 608.874 kb on - strand, within ABID97_RS03005at 608.874 kb on - strand, within ABID97_RS03005at 608.874 kb on - strand, within ABID97_RS03005at 608.874 kb on - strand, within ABID97_RS03005at 608.978 kb on + strand, within ABID97_RS03005at 608.978 kb on + strand, within ABID97_RS03005at 608.978 kb on + strand, within ABID97_RS03005at 608.979 kb on - strand, within ABID97_RS03005at 609.059 kb on + strand, within ABID97_RS03005at 609.475 kb on + strandat 609.645 kb on + strandat 609.645 kb on + strandat 609.645 kb on + strandat 609.706 kb on - strandat 609.902 kb on + strand, within ABID97_RS03010at 609.902 kb on + strand, within ABID97_RS03010at 609.902 kb on + strand, within ABID97_RS03010at 609.902 kb on + strand, within ABID97_RS03010at 610.011 kb on + strand, within ABID97_RS03010at 610.011 kb on + strand, within ABID97_RS03010at 610.011 kb on + strand, within ABID97_RS03010at 610.011 kb on + strand, within ABID97_RS03010at 610.011 kb on + strand, within ABID97_RS03010at 610.011 kb on + strand, within ABID97_RS03010at 610.012 kb on - strand, within ABID97_RS03010at 610.012 kb on - strand, within ABID97_RS03010at 610.012 kb on - strand, within ABID97_RS03010at 610.050 kb on + strand, within ABID97_RS03010at 610.050 kb on + strand, within ABID97_RS03010at 610.050 kb on + strand, within ABID97_RS03010at 610.051 kb on - strand, within ABID97_RS03010at 610.051 kb on - strand, within ABID97_RS03010at 610.051 kb on - strand, within ABID97_RS03010at 610.128 kb on + strand, within ABID97_RS03010at 610.128 kb on + strand, within ABID97_RS03010at 610.128 kb on + strand, within ABID97_RS03010at 610.128 kb on + strand, within ABID97_RS03010at 610.129 kb on - strand, within ABID97_RS03010at 610.129 kb on - strand, within ABID97_RS03010at 610.341 kb on + strand, within ABID97_RS03010at 610.342 kb on - strand, within ABID97_RS03010at 610.342 kb on - strand, within ABID97_RS03010

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
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608,009 + ABID97_RS03000 0.12 +2.5
608,009 + ABID97_RS03000 0.12 -0.1
608,010 - ABID97_RS03000 0.12 +0.7
608,177 + ABID97_RS03000 0.33 -0.3
608,177 + ABID97_RS03000 0.33 -1.1
608,177 + ABID97_RS03000 0.33 +0.2
608,177 + ABID97_RS03000 0.33 -0.1
608,284 + ABID97_RS03000 0.46 -0.1
608,285 - ABID97_RS03000 0.46 +0.1
608,378 + ABID97_RS03000 0.57 -0.5
608,378 + ABID97_RS03000 0.57 +0.6
608,379 - ABID97_RS03000 0.58 -1.4
608,379 - ABID97_RS03000 0.58 +0.2
608,379 - ABID97_RS03000 0.58 -0.5
608,379 - ABID97_RS03000 0.58 +0.2
608,552 + ABID97_RS03000 0.79 -0.6
608,552 + ABID97_RS03000 0.79 -0.5
608,553 - ABID97_RS03000 0.79 +0.5
608,553 - ABID97_RS03000 0.79 -0.6
608,553 - ABID97_RS03000 0.79 -0.6
608,553 - ABID97_RS03000 0.79 -0.0
608,553 - ABID97_RS03000 0.79 -1.7
608,818 + -0.2
608,819 - +1.8
608,819 - -0.3
608,819 - +1.9
608,873 + ABID97_RS03005 0.12 +0.2
608,873 + ABID97_RS03005 0.12 +0.3
608,873 + ABID97_RS03005 0.12 +0.5
608,873 + ABID97_RS03005 0.12 +0.3
608,873 + ABID97_RS03005 0.12 -0.2
608,874 - ABID97_RS03005 0.12 +0.8
608,874 - ABID97_RS03005 0.12 +0.9
608,874 - ABID97_RS03005 0.12 -0.4
608,874 - ABID97_RS03005 0.12 -0.7
608,978 + ABID97_RS03005 0.26 -0.9
608,978 + ABID97_RS03005 0.26 +0.1
608,978 + ABID97_RS03005 0.26 -1.7
608,979 - ABID97_RS03005 0.26 -0.3
609,059 + ABID97_RS03005 0.36 +0.3
609,475 + +0.3
609,645 + -0.6
609,645 + -1.6
609,645 + +0.2
609,706 - +0.3
609,902 + ABID97_RS03010 0.19 -0.4
609,902 + ABID97_RS03010 0.19 +0.1
609,902 + ABID97_RS03010 0.19 +0.3
609,902 + ABID97_RS03010 0.19 +0.4
610,011 + ABID97_RS03010 0.27 +0.3
610,011 + ABID97_RS03010 0.27 -0.3
610,011 + ABID97_RS03010 0.27 -0.7
610,011 + ABID97_RS03010 0.27 -2.1
610,011 + ABID97_RS03010 0.27 +0.1
610,011 + ABID97_RS03010 0.27 -0.2
610,012 - ABID97_RS03010 0.27 +0.1
610,012 - ABID97_RS03010 0.27 -0.2
610,012 - ABID97_RS03010 0.27 -1.8
610,050 + ABID97_RS03010 0.30 +0.9
610,050 + ABID97_RS03010 0.30 +0.7
610,050 + ABID97_RS03010 0.30 +0.5
610,051 - ABID97_RS03010 0.30 -0.3
610,051 - ABID97_RS03010 0.30 +0.1
610,051 - ABID97_RS03010 0.30 +0.5
610,128 + ABID97_RS03010 0.36 -0.7
610,128 + ABID97_RS03010 0.36 +1.6
610,128 + ABID97_RS03010 0.36 -0.6
610,128 + ABID97_RS03010 0.36 -0.8
610,129 - ABID97_RS03010 0.36 -0.3
610,129 - ABID97_RS03010 0.36 -0.3
610,341 + ABID97_RS03010 0.52 +0.0
610,342 - ABID97_RS03010 0.52 -0.9
610,342 - ABID97_RS03010 0.52 +0.0

Or see this region's nucleotide sequence