Strain Fitness in Variovorax sp. OAS795 around ABID97_RS02680

Experiment: Glucuronamide (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS02665 and ABID97_RS02670 overlap by 4 nucleotidesABID97_RS02670 and ABID97_RS02675 are separated by 98 nucleotidesABID97_RS02675 and ABID97_RS02680 are separated by 320 nucleotidesABID97_RS02680 and ABID97_RS02685 are separated by 88 nucleotides ABID97_RS02665: ABID97_RS02665 - membrane protein insertion efficiency factor YidD, at 544,209 to 544,496 _RS02665 ABID97_RS02670: ABID97_RS02670 - ribonuclease P protein component, at 544,493 to 544,885 _RS02670 ABID97_RS02675: ABID97_RS02675 - 50S ribosomal protein L34, at 544,984 to 545,118 _RS02675 ABID97_RS02680: ABID97_RS02680 - chromosomal replication initiator protein DnaA, at 545,439 to 546,818 _RS02680 ABID97_RS02685: ABID97_RS02685 - DNA polymerase III subunit beta, at 546,907 to 548,013 _RS02685 Position (kb) 545 546 547Strain fitness (log2 ratio) -2 -1 0 1 2 3at 545.352 kb on + strandat 545.390 kb on + strandat 545.390 kb on + strandat 545.390 kb on + strandat 545.390 kb on + strandat 545.390 kb on + strandat 545.390 kb on + strandat 545.390 kb on + strandat 545.394 kb on + strandat 545.394 kb on + strandat 545.394 kb on + strandat 545.395 kb on - strandat 545.395 kb on - strandat 545.395 kb on - strandat 545.396 kb on + strandat 546.867 kb on + strandat 546.867 kb on + strandat 546.867 kb on + strandat 546.867 kb on + strandat 546.868 kb on - strandat 546.868 kb on - strandat 546.868 kb on - strandat 546.868 kb on - strandat 546.887 kb on + strandat 546.887 kb on + strandat 546.887 kb on + strandat 546.887 kb on + strandat 546.887 kb on + strandat 546.888 kb on - strandat 546.888 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
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545,352 + +1.8
545,390 + -0.4
545,390 + +0.8
545,390 + +1.0
545,390 + +0.4
545,390 + +1.1
545,390 + -0.8
545,390 + +3.4
545,394 + +1.2
545,394 + +0.7
545,394 + +0.9
545,395 - -0.5
545,395 - -1.7
545,395 - +1.4
545,396 + +0.8
546,867 + +0.4
546,867 + +0.1
546,867 + +0.6
546,867 + -0.2
546,868 - +0.8
546,868 - +0.3
546,868 - +0.9
546,868 - -0.5
546,887 + -1.4
546,887 + -0.3
546,887 + -0.5
546,887 + -0.4
546,887 + -2.5
546,888 - +0.6
546,888 - +1.0

Or see this region's nucleotide sequence