Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS02125 and ABID97_RS02130 overlap by 4 nucleotides ABID97_RS02130 and ABID97_RS02135 overlap by 4 nucleotides ABID97_RS02135 and ABID97_RS02140 are separated by 37 nucleotides ABID97_RS02140 and ABID97_RS02145 are separated by 5 nucleotides
ABID97_RS02125: ABID97_RS02125 - PilC/PilY family type IV pilus protein, at 426,060 to 430,451
_RS02125
ABID97_RS02130: ABID97_RS02130 - type IV pilin protein, at 430,448 to 430,909
_RS02130
ABID97_RS02135: ABID97_RS02135 - GspH/FimT family pseudopilin, at 430,906 to 431,481
_RS02135
ABID97_RS02140: ABID97_RS02140 - sugar transferase, at 431,519 to 432,115
_RS02140
ABID97_RS02145: ABID97_RS02145 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 432,121 to 433,284
_RS02145
Position (kb) 430
431
432 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 430.425 kb on + strand at 430.425 kb on + strand at 430.425 kb on + strand at 430.425 kb on + strand at 430.426 kb on - strand at 430.622 kb on + strand, within ABID97_RS02130 at 430.622 kb on + strand, within ABID97_RS02130 at 430.623 kb on - strand, within ABID97_RS02130 at 430.624 kb on + strand, within ABID97_RS02130 at 430.625 kb on - strand, within ABID97_RS02130 at 430.643 kb on + strand, within ABID97_RS02130 at 430.643 kb on + strand, within ABID97_RS02130 at 430.643 kb on + strand, within ABID97_RS02130 at 430.643 kb on + strand, within ABID97_RS02130 at 430.643 kb on + strand, within ABID97_RS02130 at 430.644 kb on - strand, within ABID97_RS02130 at 430.644 kb on - strand, within ABID97_RS02130 at 430.644 kb on - strand, within ABID97_RS02130 at 430.644 kb on - strand, within ABID97_RS02130 at 430.644 kb on - strand, within ABID97_RS02130 at 430.644 kb on - strand, within ABID97_RS02130 at 430.644 kb on - strand, within ABID97_RS02130 at 430.644 kb on - strand, within ABID97_RS02130 at 430.647 kb on + strand, within ABID97_RS02130 at 430.839 kb on + strand, within ABID97_RS02130 at 430.840 kb on - strand, within ABID97_RS02130 at 430.840 kb on - strand, within ABID97_RS02130 at 430.840 kb on - strand, within ABID97_RS02130 at 430.852 kb on + strand, within ABID97_RS02130 at 431.165 kb on + strand, within ABID97_RS02135 at 431.165 kb on + strand, within ABID97_RS02135 at 431.236 kb on + strand, within ABID97_RS02135 at 431.236 kb on + strand, within ABID97_RS02135 at 431.237 kb on - strand, within ABID97_RS02135 at 431.281 kb on + strand, within ABID97_RS02135 at 431.479 kb on + strand at 431.480 kb on - strand at 431.545 kb on + strand at 431.545 kb on + strand at 431.546 kb on - strand at 431.546 kb on - strand at 431.550 kb on - strand at 431.592 kb on + strand, within ABID97_RS02140 at 431.592 kb on + strand, within ABID97_RS02140 at 431.592 kb on + strand, within ABID97_RS02140 at 431.593 kb on - strand, within ABID97_RS02140 at 431.593 kb on - strand, within ABID97_RS02140 at 431.593 kb on - strand, within ABID97_RS02140 at 431.755 kb on + strand, within ABID97_RS02140 at 431.755 kb on + strand, within ABID97_RS02140 at 431.756 kb on - strand, within ABID97_RS02140 at 431.756 kb on - strand, within ABID97_RS02140 at 432.131 kb on - strand at 432.270 kb on - strand, within ABID97_RS02145 at 432.293 kb on + strand, within ABID97_RS02145 at 432.384 kb on - strand, within ABID97_RS02145 at 432.384 kb on - strand, within ABID97_RS02145
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 430,425 + -3.5 430,425 + -1.2 430,425 + -1.4 430,425 + -1.4 430,426 - +0.6 430,622 + ABID97_RS02130 0.38 -2.2 430,622 + ABID97_RS02130 0.38 -1.1 430,623 - ABID97_RS02130 0.38 -2.1 430,624 + ABID97_RS02130 0.38 -0.6 430,625 - ABID97_RS02130 0.38 -1.8 430,643 + ABID97_RS02130 0.42 -1.5 430,643 + ABID97_RS02130 0.42 -0.9 430,643 + ABID97_RS02130 0.42 +1.1 430,643 + ABID97_RS02130 0.42 -2.3 430,643 + ABID97_RS02130 0.42 -2.0 430,644 - ABID97_RS02130 0.42 -1.3 430,644 - ABID97_RS02130 0.42 -2.1 430,644 - ABID97_RS02130 0.42 -2.0 430,644 - ABID97_RS02130 0.42 -1.9 430,644 - ABID97_RS02130 0.42 -1.1 430,644 - ABID97_RS02130 0.42 -1.7 430,644 - ABID97_RS02130 0.42 -1.0 430,644 - ABID97_RS02130 0.42 -2.3 430,647 + ABID97_RS02130 0.43 -1.0 430,839 + ABID97_RS02130 0.85 +0.5 430,840 - ABID97_RS02130 0.85 -1.2 430,840 - ABID97_RS02130 0.85 -1.8 430,840 - ABID97_RS02130 0.85 -0.2 430,852 + ABID97_RS02130 0.87 -1.5 431,165 + ABID97_RS02135 0.45 -1.5 431,165 + ABID97_RS02135 0.45 -1.8 431,236 + ABID97_RS02135 0.57 -1.9 431,236 + ABID97_RS02135 0.57 -2.8 431,237 - ABID97_RS02135 0.57 -0.4 431,281 + ABID97_RS02135 0.65 -2.3 431,479 + +0.1 431,480 - -0.4 431,545 + -1.5 431,545 + -1.9 431,546 - -1.7 431,546 - -1.0 431,550 - -0.8 431,592 + ABID97_RS02140 0.12 -1.0 431,592 + ABID97_RS02140 0.12 -1.7 431,592 + ABID97_RS02140 0.12 -2.1 431,593 - ABID97_RS02140 0.12 -0.8 431,593 - ABID97_RS02140 0.12 -2.0 431,593 - ABID97_RS02140 0.12 -2.2 431,755 + ABID97_RS02140 0.40 -1.0 431,755 + ABID97_RS02140 0.40 -1.5 431,756 - ABID97_RS02140 0.40 -2.5 431,756 - ABID97_RS02140 0.40 -2.7 432,131 - -0.2 432,270 - ABID97_RS02145 0.13 -1.0 432,293 + ABID97_RS02145 0.15 -1.4 432,384 - ABID97_RS02145 0.23 -2.4 432,384 - ABID97_RS02145 0.23 -0.9
Or see this region's nucleotide sequence