Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS00915 and ABID97_RS00920 are separated by 3 nucleotides ABID97_RS00920 and ABID97_RS00925 are separated by 228 nucleotides ABID97_RS00925 and ABID97_RS00930 are separated by 91 nucleotides
ABID97_RS00915: ABID97_RS00915 - ATP-binding cassette domain-containing protein, at 184,568 to 185,509
_RS00915
ABID97_RS00920: ABID97_RS00920 - ABC transporter permease, at 185,513 to 186,349
_RS00920
ABID97_RS00925: ABID97_RS00925 - MarR family transcriptional regulator, at 186,578 to 187,030
_RS00925
ABID97_RS00930: ABID97_RS00930 - organic hydroperoxide resistance protein, at 187,122 to 187,547
_RS00930
Position (kb) 185
186
187 Strain fitness (log2 ratio) -2
-1
0
1
2 at 184.886 kb on + strand, within ABID97_RS00915 at 184.887 kb on - strand, within ABID97_RS00915 at 185.288 kb on + strand, within ABID97_RS00915 at 185.288 kb on + strand, within ABID97_RS00915 at 185.378 kb on + strand, within ABID97_RS00915 at 185.378 kb on + strand, within ABID97_RS00915 at 185.379 kb on - strand, within ABID97_RS00915 at 185.434 kb on + strand at 185.435 kb on - strand at 185.754 kb on - strand, within ABID97_RS00920 at 185.754 kb on - strand, within ABID97_RS00920 at 185.754 kb on - strand, within ABID97_RS00920 at 185.754 kb on - strand, within ABID97_RS00920 at 185.754 kb on - strand, within ABID97_RS00920 at 185.823 kb on - strand, within ABID97_RS00920 at 185.823 kb on - strand, within ABID97_RS00920 at 185.823 kb on - strand, within ABID97_RS00920 at 185.823 kb on - strand, within ABID97_RS00920 at 186.099 kb on - strand, within ABID97_RS00920 at 186.102 kb on - strand, within ABID97_RS00920 at 186.290 kb on + strand at 186.291 kb on - strand at 186.566 kb on - strand at 186.704 kb on + strand, within ABID97_RS00925 at 186.833 kb on + strand, within ABID97_RS00925 at 186.834 kb on - strand, within ABID97_RS00925 at 187.149 kb on + strand at 187.149 kb on + strand at 187.150 kb on - strand at 187.285 kb on - strand, within ABID97_RS00930
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 184,886 + ABID97_RS00915 0.34 +0.3 184,887 - ABID97_RS00915 0.34 +0.1 185,288 + ABID97_RS00915 0.76 -0.5 185,288 + ABID97_RS00915 0.76 +0.2 185,378 + ABID97_RS00915 0.86 +0.0 185,378 + ABID97_RS00915 0.86 -0.3 185,379 - ABID97_RS00915 0.86 -2.7 185,434 + +0.9 185,435 - +0.1 185,754 - ABID97_RS00920 0.29 +0.1 185,754 - ABID97_RS00920 0.29 -0.1 185,754 - ABID97_RS00920 0.29 +0.5 185,754 - ABID97_RS00920 0.29 -1.1 185,754 - ABID97_RS00920 0.29 +0.2 185,823 - ABID97_RS00920 0.37 -0.9 185,823 - ABID97_RS00920 0.37 -0.2 185,823 - ABID97_RS00920 0.37 -0.5 185,823 - ABID97_RS00920 0.37 +0.3 186,099 - ABID97_RS00920 0.70 -0.2 186,102 - ABID97_RS00920 0.70 -1.2 186,290 + -0.5 186,291 - -0.3 186,566 - +0.3 186,704 + ABID97_RS00925 0.28 -0.3 186,833 + ABID97_RS00925 0.56 +1.9 186,834 - ABID97_RS00925 0.57 +0.2 187,149 + -0.1 187,149 + -1.3 187,150 - -0.5 187,285 - ABID97_RS00930 0.38 +0.0
Or see this region's nucleotide sequence