Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_874

Experiment: Aluminum chloride 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_873 and PfGW456L13_874 are separated by 18 nucleotidesPfGW456L13_874 and PfGW456L13_875 are separated by 166 nucleotides PfGW456L13_873 - Porphobilinogen synthase (EC 4.2.1.24), at 979,651 to 980,664 _873 PfGW456L13_874 - Polyphosphate kinase (EC 2.7.4.1), at 980,683 to 982,911 _874 PfGW456L13_875 - Exopolyphosphatase (EC 3.6.1.11), at 983,078 to 984,580 _875 Position (kb) 980 981 982 983Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 979.781 kb on + strand, within PfGW456L13_873at 979.782 kb on - strand, within PfGW456L13_873at 980.089 kb on + strand, within PfGW456L13_873at 980.090 kb on - strand, within PfGW456L13_873at 980.254 kb on + strand, within PfGW456L13_873at 980.266 kb on + strand, within PfGW456L13_873at 980.266 kb on + strand, within PfGW456L13_873at 980.266 kb on + strand, within PfGW456L13_873at 980.266 kb on + strand, within PfGW456L13_873at 980.266 kb on + strand, within PfGW456L13_873at 980.266 kb on + strand, within PfGW456L13_873at 980.267 kb on - strand, within PfGW456L13_873at 980.278 kb on + strand, within PfGW456L13_873at 980.279 kb on - strand, within PfGW456L13_873at 980.279 kb on - strand, within PfGW456L13_873at 980.279 kb on - strand, within PfGW456L13_873at 980.279 kb on - strand, within PfGW456L13_873at 980.279 kb on - strand, within PfGW456L13_873at 980.282 kb on - strand, within PfGW456L13_873at 980.344 kb on + strand, within PfGW456L13_873at 980.345 kb on - strand, within PfGW456L13_873at 980.443 kb on + strand, within PfGW456L13_873at 980.443 kb on + strand, within PfGW456L13_873at 980.443 kb on + strand, within PfGW456L13_873at 980.444 kb on - strand, within PfGW456L13_873at 980.465 kb on + strand, within PfGW456L13_873at 980.565 kb on + strandat 980.620 kb on + strandat 980.620 kb on + strandat 980.620 kb on + strandat 980.620 kb on + strandat 980.621 kb on - strandat 980.621 kb on - strandat 980.648 kb on + strandat 980.714 kb on + strandat 980.857 kb on + strandat 980.857 kb on + strandat 980.857 kb on + strandat 980.857 kb on + strandat 980.858 kb on - strandat 980.858 kb on - strandat 980.858 kb on - strandat 980.858 kb on - strandat 980.858 kb on - strandat 980.858 kb on - strandat 980.927 kb on - strand, within PfGW456L13_874at 980.927 kb on - strand, within PfGW456L13_874at 980.927 kb on - strand, within PfGW456L13_874at 980.927 kb on - strand, within PfGW456L13_874at 981.186 kb on + strand, within PfGW456L13_874at 981.439 kb on + strand, within PfGW456L13_874at 981.439 kb on + strand, within PfGW456L13_874at 981.439 kb on + strand, within PfGW456L13_874at 981.439 kb on + strand, within PfGW456L13_874at 981.439 kb on + strand, within PfGW456L13_874at 981.439 kb on + strand, within PfGW456L13_874at 981.439 kb on + strand, within PfGW456L13_874at 981.439 kb on + strand, within PfGW456L13_874at 981.439 kb on + strand, within PfGW456L13_874at 981.439 kb on + strand, within PfGW456L13_874at 981.439 kb on + strand, within PfGW456L13_874at 981.439 kb on + strand, within PfGW456L13_874at 981.439 kb on + strand, within PfGW456L13_874at 981.439 kb on + strand, within PfGW456L13_874at 981.439 kb on + strand, within PfGW456L13_874at 981.439 kb on + strand, within PfGW456L13_874at 981.439 kb on + strand, within PfGW456L13_874at 981.439 kb on + strand, within PfGW456L13_874at 981.439 kb on + strand, within PfGW456L13_874at 981.439 kb on + strand, within PfGW456L13_874at 981.439 kb on + strand, within PfGW456L13_874at 981.439 kb on + strand, within PfGW456L13_874at 981.439 kb on + strand, within PfGW456L13_874at 981.439 kb on + strand, within PfGW456L13_874at 981.439 kb on + strand, within PfGW456L13_874at 981.439 kb on + strand, within PfGW456L13_874at 981.439 kb on + strand, within PfGW456L13_874at 981.439 kb on + strand, within PfGW456L13_874at 981.439 kb on + strand, within PfGW456L13_874at 981.439 kb on + strand, within PfGW456L13_874at 981.440 kb on - strand, within PfGW456L13_874at 981.440 kb on - strand, within PfGW456L13_874at 981.440 kb on - strand, within PfGW456L13_874at 981.440 kb on - strand, within PfGW456L13_874at 981.440 kb on - strand, within PfGW456L13_874at 981.440 kb on - strand, within PfGW456L13_874at 981.440 kb on - strand, within PfGW456L13_874at 981.440 kb on - strand, within PfGW456L13_874at 981.440 kb on - strand, within PfGW456L13_874at 981.440 kb on - strand, within PfGW456L13_874at 981.440 kb on - strand, within PfGW456L13_874at 981.440 kb on - strand, within PfGW456L13_874at 981.440 kb on - strand, within PfGW456L13_874at 981.440 kb on - strand, within PfGW456L13_874at 981.440 kb on - strand, within PfGW456L13_874at 981.440 kb on - strand, within PfGW456L13_874at 981.440 kb on - strand, within PfGW456L13_874at 981.440 kb on - strand, within PfGW456L13_874at 981.440 kb on - strand, within PfGW456L13_874at 981.440 kb on - strand, within PfGW456L13_874at 981.440 kb on - strand, within PfGW456L13_874at 981.706 kb on + strand, within PfGW456L13_874at 981.706 kb on + strand, within PfGW456L13_874at 981.706 kb on + strand, within PfGW456L13_874at 981.706 kb on + strand, within PfGW456L13_874at 981.706 kb on + strand, within PfGW456L13_874at 981.707 kb on - strand, within PfGW456L13_874at 981.707 kb on - strand, within PfGW456L13_874at 981.707 kb on - strand, within PfGW456L13_874at 981.750 kb on + strand, within PfGW456L13_874at 981.781 kb on + strand, within PfGW456L13_874at 981.781 kb on + strand, within PfGW456L13_874at 981.781 kb on + strand, within PfGW456L13_874at 981.781 kb on + strand, within PfGW456L13_874at 981.782 kb on - strand, within PfGW456L13_874at 981.782 kb on - strand, within PfGW456L13_874at 981.958 kb on + strand, within PfGW456L13_874at 982.117 kb on + strand, within PfGW456L13_874at 982.117 kb on + strand, within PfGW456L13_874at 982.117 kb on + strand, within PfGW456L13_874at 982.117 kb on + strand, within PfGW456L13_874at 982.117 kb on + strand, within PfGW456L13_874at 982.117 kb on + strand, within PfGW456L13_874at 982.117 kb on + strand, within PfGW456L13_874at 982.117 kb on + strand, within PfGW456L13_874at 982.117 kb on + strand, within PfGW456L13_874at 982.118 kb on - strand, within PfGW456L13_874at 982.118 kb on - strand, within PfGW456L13_874at 982.118 kb on - strand, within PfGW456L13_874at 982.118 kb on - strand, within PfGW456L13_874at 982.118 kb on - strand, within PfGW456L13_874at 982.118 kb on - strand, within PfGW456L13_874at 982.118 kb on - strand, within PfGW456L13_874at 982.118 kb on - strand, within PfGW456L13_874at 982.118 kb on - strand, within PfGW456L13_874at 982.118 kb on - strand, within PfGW456L13_874at 982.118 kb on - strand, within PfGW456L13_874at 982.118 kb on - strand, within PfGW456L13_874at 982.118 kb on - strand, within PfGW456L13_874at 982.118 kb on - strand, within PfGW456L13_874at 982.118 kb on - strand, within PfGW456L13_874at 982.118 kb on - strand, within PfGW456L13_874at 982.118 kb on - strand, within PfGW456L13_874at 982.118 kb on - strand, within PfGW456L13_874at 982.118 kb on - strand, within PfGW456L13_874at 982.118 kb on - strand, within PfGW456L13_874at 982.118 kb on - strand, within PfGW456L13_874at 982.118 kb on - strand, within PfGW456L13_874at 982.212 kb on + strand, within PfGW456L13_874at 982.216 kb on + strand, within PfGW456L13_874at 982.216 kb on + strand, within PfGW456L13_874at 982.216 kb on + strand, within PfGW456L13_874at 982.216 kb on + strand, within PfGW456L13_874at 982.216 kb on + strand, within PfGW456L13_874at 982.216 kb on + strand, within PfGW456L13_874at 982.216 kb on + strand, within PfGW456L13_874at 982.216 kb on + strand, within PfGW456L13_874at 982.216 kb on + strand, within PfGW456L13_874at 982.216 kb on + strand, within PfGW456L13_874at 982.217 kb on - strand, within PfGW456L13_874at 982.217 kb on - strand, within PfGW456L13_874at 982.217 kb on - strand, within PfGW456L13_874at 982.217 kb on - strand, within PfGW456L13_874at 982.217 kb on - strand, within PfGW456L13_874at 982.217 kb on - strand, within PfGW456L13_874at 982.240 kb on + strand, within PfGW456L13_874at 982.240 kb on + strand, within PfGW456L13_874at 982.240 kb on + strand, within PfGW456L13_874at 982.241 kb on - strand, within PfGW456L13_874at 982.241 kb on - strand, within PfGW456L13_874at 982.241 kb on - strand, within PfGW456L13_874at 982.241 kb on - strand, within PfGW456L13_874at 982.250 kb on - strand, within PfGW456L13_874at 982.250 kb on - strand, within PfGW456L13_874at 982.250 kb on - strand, within PfGW456L13_874at 982.250 kb on - strand, within PfGW456L13_874at 982.250 kb on - strand, within PfGW456L13_874at 982.324 kb on - strand, within PfGW456L13_874at 982.324 kb on - strand, within PfGW456L13_874at 982.486 kb on + strand, within PfGW456L13_874at 982.486 kb on + strand, within PfGW456L13_874at 982.486 kb on + strand, within PfGW456L13_874at 982.486 kb on + strand, within PfGW456L13_874at 982.486 kb on + strand, within PfGW456L13_874at 982.486 kb on + strand, within PfGW456L13_874at 982.486 kb on + strand, within PfGW456L13_874at 982.486 kb on + strand, within PfGW456L13_874at 982.486 kb on + strand, within PfGW456L13_874at 982.486 kb on + strand, within PfGW456L13_874at 982.486 kb on + strand, within PfGW456L13_874at 982.487 kb on - strand, within PfGW456L13_874at 982.487 kb on - strand, within PfGW456L13_874at 982.487 kb on - strand, within PfGW456L13_874at 982.487 kb on - strand, within PfGW456L13_874at 982.487 kb on - strand, within PfGW456L13_874at 982.487 kb on - strand, within PfGW456L13_874at 982.487 kb on - strand, within PfGW456L13_874at 982.627 kb on + strand, within PfGW456L13_874at 982.627 kb on + strand, within PfGW456L13_874at 982.627 kb on + strand, within PfGW456L13_874at 982.768 kb on + strandat 982.768 kb on + strandat 982.768 kb on + strandat 982.768 kb on + strandat 982.769 kb on - strandat 982.769 kb on - strandat 982.769 kb on - strandat 982.769 kb on - strandat 982.769 kb on - strandat 982.816 kb on + strandat 982.816 kb on + strandat 982.817 kb on - strandat 982.817 kb on - strandat 982.817 kb on - strandat 982.824 kb on + strandat 982.824 kb on + strandat 983.017 kb on + strandat 983.018 kb on - strandat 983.277 kb on - strand, within PfGW456L13_875at 983.448 kb on + strand, within PfGW456L13_875at 983.580 kb on - strand, within PfGW456L13_875at 983.673 kb on + strand, within PfGW456L13_875at 983.673 kb on + strand, within PfGW456L13_875at 983.794 kb on + strand, within PfGW456L13_875

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 5 mM
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979,781 + PfGW456L13_873 0.13 -0.0
979,782 - PfGW456L13_873 0.13 -0.2
980,089 + PfGW456L13_873 0.43 -0.0
980,090 - PfGW456L13_873 0.43 -1.0
980,254 + PfGW456L13_873 0.59 -0.3
980,266 + PfGW456L13_873 0.61 +1.5
980,266 + PfGW456L13_873 0.61 +0.7
980,266 + PfGW456L13_873 0.61 +0.7
980,266 + PfGW456L13_873 0.61 +1.0
980,266 + PfGW456L13_873 0.61 -2.5
980,266 + PfGW456L13_873 0.61 -0.5
980,267 - PfGW456L13_873 0.61 +0.1
980,278 + PfGW456L13_873 0.62 +1.7
980,279 - PfGW456L13_873 0.62 +0.9
980,279 - PfGW456L13_873 0.62 -0.4
980,279 - PfGW456L13_873 0.62 -0.1
980,279 - PfGW456L13_873 0.62 +0.4
980,279 - PfGW456L13_873 0.62 +0.4
980,282 - PfGW456L13_873 0.62 +0.9
980,344 + PfGW456L13_873 0.68 +1.6
980,345 - PfGW456L13_873 0.68 -1.6
980,443 + PfGW456L13_873 0.78 +1.3
980,443 + PfGW456L13_873 0.78 +0.3
980,443 + PfGW456L13_873 0.78 +0.2
980,444 - PfGW456L13_873 0.78 +0.2
980,465 + PfGW456L13_873 0.80 +1.1
980,565 + +1.0
980,620 + -1.3
980,620 + +0.2
980,620 + +2.2
980,620 + -0.2
980,621 - +0.7
980,621 - +0.1
980,648 + +2.1
980,714 + -3.2
980,857 + -0.7
980,857 + -2.5
980,857 + -1.4
980,857 + -1.8
980,858 - -1.0
980,858 - -0.0
980,858 - -2.2
980,858 - -2.9
980,858 - -1.5
980,858 - -1.9
980,927 - PfGW456L13_874 0.11 +0.2
980,927 - PfGW456L13_874 0.11 -0.9
980,927 - PfGW456L13_874 0.11 -1.6
980,927 - PfGW456L13_874 0.11 -2.8
981,186 + PfGW456L13_874 0.23 -3.1
981,439 + PfGW456L13_874 0.34 -0.4
981,439 + PfGW456L13_874 0.34 -1.7
981,439 + PfGW456L13_874 0.34 -3.2
981,439 + PfGW456L13_874 0.34 -1.3
981,439 + PfGW456L13_874 0.34 -3.5
981,439 + PfGW456L13_874 0.34 -2.6
981,439 + PfGW456L13_874 0.34 -2.1
981,439 + PfGW456L13_874 0.34 -0.3
981,439 + PfGW456L13_874 0.34 -4.2
981,439 + PfGW456L13_874 0.34 -1.0
981,439 + PfGW456L13_874 0.34 -1.9
981,439 + PfGW456L13_874 0.34 -0.1
981,439 + PfGW456L13_874 0.34 -1.8
981,439 + PfGW456L13_874 0.34 -1.6
981,439 + PfGW456L13_874 0.34 -2.5
981,439 + PfGW456L13_874 0.34 -1.8
981,439 + PfGW456L13_874 0.34 -1.9
981,439 + PfGW456L13_874 0.34 -1.9
981,439 + PfGW456L13_874 0.34 -3.8
981,439 + PfGW456L13_874 0.34 -0.9
981,439 + PfGW456L13_874 0.34 -0.4
981,439 + PfGW456L13_874 0.34 -3.7
981,439 + PfGW456L13_874 0.34 -0.8
981,439 + PfGW456L13_874 0.34 -0.6
981,439 + PfGW456L13_874 0.34 -1.0
981,439 + PfGW456L13_874 0.34 -1.7
981,439 + PfGW456L13_874 0.34 -2.8
981,439 + PfGW456L13_874 0.34 -2.5
981,439 + PfGW456L13_874 0.34 -2.4
981,439 + PfGW456L13_874 0.34 -3.0
981,440 - PfGW456L13_874 0.34 +0.1
981,440 - PfGW456L13_874 0.34 -3.4
981,440 - PfGW456L13_874 0.34 -2.1
981,440 - PfGW456L13_874 0.34 -3.0
981,440 - PfGW456L13_874 0.34 -1.2
981,440 - PfGW456L13_874 0.34 -1.1
981,440 - PfGW456L13_874 0.34 +0.2
981,440 - PfGW456L13_874 0.34 -3.0
981,440 - PfGW456L13_874 0.34 -1.4
981,440 - PfGW456L13_874 0.34 -1.4
981,440 - PfGW456L13_874 0.34 -2.6
981,440 - PfGW456L13_874 0.34 -1.8
981,440 - PfGW456L13_874 0.34 -1.8
981,440 - PfGW456L13_874 0.34 +1.3
981,440 - PfGW456L13_874 0.34 +0.3
981,440 - PfGW456L13_874 0.34 -0.3
981,440 - PfGW456L13_874 0.34 -0.4
981,440 - PfGW456L13_874 0.34 -0.2
981,440 - PfGW456L13_874 0.34 -0.1
981,440 - PfGW456L13_874 0.34 -2.2
981,440 - PfGW456L13_874 0.34 -2.0
981,706 + PfGW456L13_874 0.46 -1.0
981,706 + PfGW456L13_874 0.46 -1.1
981,706 + PfGW456L13_874 0.46 -0.0
981,706 + PfGW456L13_874 0.46 +0.0
981,706 + PfGW456L13_874 0.46 -2.0
981,707 - PfGW456L13_874 0.46 -1.3
981,707 - PfGW456L13_874 0.46 -3.2
981,707 - PfGW456L13_874 0.46 -2.8
981,750 + PfGW456L13_874 0.48 -0.2
981,781 + PfGW456L13_874 0.49 -3.1
981,781 + PfGW456L13_874 0.49 -1.3
981,781 + PfGW456L13_874 0.49 -1.9
981,781 + PfGW456L13_874 0.49 +0.2
981,782 - PfGW456L13_874 0.49 +0.2
981,782 - PfGW456L13_874 0.49 -3.7
981,958 + PfGW456L13_874 0.57 -0.2
982,117 + PfGW456L13_874 0.64 -1.9
982,117 + PfGW456L13_874 0.64 -0.5
982,117 + PfGW456L13_874 0.64 -0.4
982,117 + PfGW456L13_874 0.64 -0.5
982,117 + PfGW456L13_874 0.64 -1.1
982,117 + PfGW456L13_874 0.64 -1.9
982,117 + PfGW456L13_874 0.64 +0.6
982,117 + PfGW456L13_874 0.64 -0.2
982,117 + PfGW456L13_874 0.64 -1.6
982,118 - PfGW456L13_874 0.64 -0.5
982,118 - PfGW456L13_874 0.64 -0.6
982,118 - PfGW456L13_874 0.64 -2.1
982,118 - PfGW456L13_874 0.64 -0.4
982,118 - PfGW456L13_874 0.64 -0.3
982,118 - PfGW456L13_874 0.64 -0.1
982,118 - PfGW456L13_874 0.64 -1.6
982,118 - PfGW456L13_874 0.64 -0.5
982,118 - PfGW456L13_874 0.64 -4.8
982,118 - PfGW456L13_874 0.64 -0.4
982,118 - PfGW456L13_874 0.64 -1.5
982,118 - PfGW456L13_874 0.64 -0.0
982,118 - PfGW456L13_874 0.64 -1.2
982,118 - PfGW456L13_874 0.64 -3.0
982,118 - PfGW456L13_874 0.64 -1.9
982,118 - PfGW456L13_874 0.64 -1.8
982,118 - PfGW456L13_874 0.64 -1.7
982,118 - PfGW456L13_874 0.64 -0.1
982,118 - PfGW456L13_874 0.64 -2.2
982,118 - PfGW456L13_874 0.64 -3.3
982,118 - PfGW456L13_874 0.64 -0.6
982,118 - PfGW456L13_874 0.64 -1.8
982,212 + PfGW456L13_874 0.69 +1.1
982,216 + PfGW456L13_874 0.69 -2.1
982,216 + PfGW456L13_874 0.69 +0.2
982,216 + PfGW456L13_874 0.69 -0.2
982,216 + PfGW456L13_874 0.69 -2.5
982,216 + PfGW456L13_874 0.69 -0.8
982,216 + PfGW456L13_874 0.69 +1.0
982,216 + PfGW456L13_874 0.69 -0.6
982,216 + PfGW456L13_874 0.69 -1.6
982,216 + PfGW456L13_874 0.69 -1.2
982,216 + PfGW456L13_874 0.69 -1.2
982,217 - PfGW456L13_874 0.69 -1.8
982,217 - PfGW456L13_874 0.69 -0.8
982,217 - PfGW456L13_874 0.69 -0.8
982,217 - PfGW456L13_874 0.69 -2.0
982,217 - PfGW456L13_874 0.69 -2.4
982,217 - PfGW456L13_874 0.69 -2.0
982,240 + PfGW456L13_874 0.70 +0.7
982,240 + PfGW456L13_874 0.70 -2.6
982,240 + PfGW456L13_874 0.70 -0.4
982,241 - PfGW456L13_874 0.70 +0.8
982,241 - PfGW456L13_874 0.70 -2.1
982,241 - PfGW456L13_874 0.70 -0.6
982,241 - PfGW456L13_874 0.70 -3.0
982,250 - PfGW456L13_874 0.70 +1.4
982,250 - PfGW456L13_874 0.70 -2.5
982,250 - PfGW456L13_874 0.70 -1.2
982,250 - PfGW456L13_874 0.70 -3.9
982,250 - PfGW456L13_874 0.70 -2.3
982,324 - PfGW456L13_874 0.74 -1.2
982,324 - PfGW456L13_874 0.74 -3.7
982,486 + PfGW456L13_874 0.81 -0.8
982,486 + PfGW456L13_874 0.81 -1.6
982,486 + PfGW456L13_874 0.81 +0.1
982,486 + PfGW456L13_874 0.81 -1.9
982,486 + PfGW456L13_874 0.81 +0.3
982,486 + PfGW456L13_874 0.81 -2.7
982,486 + PfGW456L13_874 0.81 -0.4
982,486 + PfGW456L13_874 0.81 -2.2
982,486 + PfGW456L13_874 0.81 -2.6
982,486 + PfGW456L13_874 0.81 -2.7
982,486 + PfGW456L13_874 0.81 -3.6
982,487 - PfGW456L13_874 0.81 -4.2
982,487 - PfGW456L13_874 0.81 -2.6
982,487 - PfGW456L13_874 0.81 -3.0
982,487 - PfGW456L13_874 0.81 -3.7
982,487 - PfGW456L13_874 0.81 -1.5
982,487 - PfGW456L13_874 0.81 -0.3
982,487 - PfGW456L13_874 0.81 -1.4
982,627 + PfGW456L13_874 0.87 -0.9
982,627 + PfGW456L13_874 0.87 -1.4
982,627 + PfGW456L13_874 0.87 -0.8
982,768 + -3.4
982,768 + -1.8
982,768 + -2.2
982,768 + -1.3
982,769 - -2.8
982,769 - -0.3
982,769 - -2.4
982,769 - +0.3
982,769 - -3.8
982,816 + -2.2
982,816 + -2.0
982,817 - -2.6
982,817 - -3.5
982,817 - -2.7
982,824 + -1.7
982,824 + -2.5
983,017 + +1.1
983,018 - -1.0
983,277 - PfGW456L13_875 0.13 +1.6
983,448 + PfGW456L13_875 0.25 +1.9
983,580 - PfGW456L13_875 0.33 +1.4
983,673 + PfGW456L13_875 0.40 +0.4
983,673 + PfGW456L13_875 0.40 +0.2
983,794 + PfGW456L13_875 0.48 +0.0

Or see this region's nucleotide sequence