Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_700

Experiment: Aluminum chloride 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_699 and PfGW456L13_700 overlap by 4 nucleotidesPfGW456L13_700 and PfGW456L13_701 overlap by 4 nucleotides PfGW456L13_699 - Membrane protease subunits, stomatin/prohibitin homologs, at 795,163 to 797,148 _699 PfGW456L13_700 - HflC protein, at 797,145 to 798,182 _700 PfGW456L13_701 - HflK protein, at 798,179 to 799,237 _701 Position (kb) 797 798 799Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 796.195 kb on + strand, within PfGW456L13_699at 796.195 kb on + strand, within PfGW456L13_699at 796.195 kb on + strand, within PfGW456L13_699at 796.196 kb on - strand, within PfGW456L13_699at 796.196 kb on - strand, within PfGW456L13_699at 796.196 kb on - strand, within PfGW456L13_699at 796.196 kb on - strand, within PfGW456L13_699at 796.296 kb on - strand, within PfGW456L13_699at 796.487 kb on - strand, within PfGW456L13_699at 796.528 kb on + strand, within PfGW456L13_699at 796.528 kb on + strand, within PfGW456L13_699at 796.528 kb on + strand, within PfGW456L13_699at 796.528 kb on + strand, within PfGW456L13_699at 796.528 kb on + strand, within PfGW456L13_699at 796.528 kb on + strand, within PfGW456L13_699at 796.528 kb on + strand, within PfGW456L13_699at 796.528 kb on + strand, within PfGW456L13_699at 796.528 kb on + strand, within PfGW456L13_699at 796.528 kb on + strand, within PfGW456L13_699at 796.529 kb on - strand, within PfGW456L13_699at 796.529 kb on - strand, within PfGW456L13_699at 796.529 kb on - strand, within PfGW456L13_699at 796.529 kb on - strand, within PfGW456L13_699at 796.529 kb on - strand, within PfGW456L13_699at 796.529 kb on - strand, within PfGW456L13_699at 796.529 kb on - strand, within PfGW456L13_699at 796.530 kb on + strand, within PfGW456L13_699at 796.530 kb on + strand, within PfGW456L13_699at 796.530 kb on + strand, within PfGW456L13_699at 796.544 kb on + strand, within PfGW456L13_699at 796.544 kb on + strand, within PfGW456L13_699at 796.544 kb on + strandat 796.544 kb on + strand, within PfGW456L13_699at 796.545 kb on - strand, within PfGW456L13_699at 796.545 kb on - strand, within PfGW456L13_699at 796.545 kb on - strand, within PfGW456L13_699at 796.545 kb on - strand, within PfGW456L13_699at 796.756 kb on + strand, within PfGW456L13_699at 796.757 kb on - strand, within PfGW456L13_699at 796.830 kb on + strand, within PfGW456L13_699at 796.830 kb on + strand, within PfGW456L13_699at 796.831 kb on - strand, within PfGW456L13_699at 796.948 kb on + strand, within PfGW456L13_699at 796.948 kb on + strand, within PfGW456L13_699at 796.948 kb on + strand, within PfGW456L13_699at 796.948 kb on + strand, within PfGW456L13_699at 796.949 kb on - strand, within PfGW456L13_699at 796.949 kb on - strand, within PfGW456L13_699at 796.984 kb on + strandat 796.985 kb on - strandat 796.985 kb on - strandat 796.985 kb on - strandat 796.985 kb on - strandat 796.985 kb on - strandat 796.985 kb on - strandat 796.985 kb on - strandat 796.985 kb on - strandat 797.082 kb on + strandat 797.082 kb on + strandat 797.082 kb on + strandat 797.082 kb on + strandat 797.082 kb on + strandat 797.083 kb on - strandat 797.460 kb on - strand, within PfGW456L13_700at 797.523 kb on + strand, within PfGW456L13_700at 797.523 kb on + strand, within PfGW456L13_700at 797.524 kb on - strand, within PfGW456L13_700at 797.524 kb on - strand, within PfGW456L13_700at 797.524 kb on - strand, within PfGW456L13_700at 797.524 kb on - strand, within PfGW456L13_700at 797.681 kb on + strand, within PfGW456L13_700at 797.681 kb on + strand, within PfGW456L13_700at 797.682 kb on - strand, within PfGW456L13_700at 797.682 kb on - strand, within PfGW456L13_700at 797.682 kb on - strand, within PfGW456L13_700at 797.698 kb on + strand, within PfGW456L13_700at 797.699 kb on - strand, within PfGW456L13_700at 797.737 kb on + strand, within PfGW456L13_700at 797.737 kb on + strand, within PfGW456L13_700at 797.737 kb on + strand, within PfGW456L13_700at 797.737 kb on + strand, within PfGW456L13_700at 797.738 kb on - strand, within PfGW456L13_700at 797.738 kb on - strand, within PfGW456L13_700at 797.738 kb on - strand, within PfGW456L13_700at 797.738 kb on - strand, within PfGW456L13_700at 797.738 kb on - strand, within PfGW456L13_700at 797.760 kb on + strand, within PfGW456L13_700at 797.760 kb on + strand, within PfGW456L13_700at 797.760 kb on + strand, within PfGW456L13_700at 797.760 kb on + strand, within PfGW456L13_700at 797.760 kb on + strand, within PfGW456L13_700at 797.760 kb on + strand, within PfGW456L13_700at 797.760 kb on + strand, within PfGW456L13_700at 797.760 kb on + strand, within PfGW456L13_700at 797.760 kb on + strand, within PfGW456L13_700at 797.760 kb on + strand, within PfGW456L13_700at 797.760 kb on + strand, within PfGW456L13_700at 797.760 kb on + strand, within PfGW456L13_700at 797.760 kb on + strand, within PfGW456L13_700at 797.760 kb on + strand, within PfGW456L13_700at 797.761 kb on - strand, within PfGW456L13_700at 797.761 kb on - strand, within PfGW456L13_700at 797.761 kb on - strand, within PfGW456L13_700at 797.761 kb on - strand, within PfGW456L13_700at 797.761 kb on - strand, within PfGW456L13_700at 797.761 kb on - strand, within PfGW456L13_700at 797.864 kb on + strand, within PfGW456L13_700at 797.865 kb on - strand, within PfGW456L13_700at 797.969 kb on + strand, within PfGW456L13_700at 798.006 kb on + strand, within PfGW456L13_700at 798.007 kb on - strand, within PfGW456L13_700at 798.039 kb on + strand, within PfGW456L13_700at 798.039 kb on + strand, within PfGW456L13_700at 798.040 kb on - strand, within PfGW456L13_700at 798.040 kb on - strand, within PfGW456L13_700at 798.257 kb on + strandat 798.258 kb on - strandat 798.546 kb on - strand, within PfGW456L13_701at 798.552 kb on + strand, within PfGW456L13_701at 798.596 kb on + strand, within PfGW456L13_701at 798.597 kb on - strand, within PfGW456L13_701at 798.615 kb on - strand, within PfGW456L13_701at 798.616 kb on + strand, within PfGW456L13_701at 798.616 kb on + strand, within PfGW456L13_701at 798.616 kb on + strand, within PfGW456L13_701at 798.616 kb on + strand, within PfGW456L13_701at 798.616 kb on + strand, within PfGW456L13_701at 798.616 kb on + strand, within PfGW456L13_701at 798.617 kb on - strand, within PfGW456L13_701at 798.617 kb on - strand, within PfGW456L13_701at 798.617 kb on - strand, within PfGW456L13_701at 798.617 kb on - strand, within PfGW456L13_701at 798.617 kb on - strand, within PfGW456L13_701at 798.617 kb on - strand, within PfGW456L13_701at 798.712 kb on + strand, within PfGW456L13_701at 798.713 kb on - strand, within PfGW456L13_701at 798.713 kb on - strand, within PfGW456L13_701at 799.010 kb on - strand, within PfGW456L13_701at 799.014 kb on + strand, within PfGW456L13_701at 799.014 kb on + strand, within PfGW456L13_701at 799.014 kb on + strand, within PfGW456L13_701at 799.015 kb on - strand, within PfGW456L13_701at 799.015 kb on - strand, within PfGW456L13_701at 799.015 kb on - strand, within PfGW456L13_701at 799.015 kb on - strand, within PfGW456L13_701at 799.066 kb on + strand, within PfGW456L13_701at 799.067 kb on - strand, within PfGW456L13_701at 799.077 kb on + strand, within PfGW456L13_701at 799.077 kb on + strand, within PfGW456L13_701at 799.077 kb on + strand, within PfGW456L13_701at 799.078 kb on - strand, within PfGW456L13_701at 799.078 kb on - strand, within PfGW456L13_701at 799.078 kb on - strand, within PfGW456L13_701at 799.136 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 5 mM
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796,195 + PfGW456L13_699 0.52 -1.2
796,195 + PfGW456L13_699 0.52 +0.4
796,195 + PfGW456L13_699 0.52 -1.2
796,196 - PfGW456L13_699 0.52 +0.1
796,196 - PfGW456L13_699 0.52 +1.0
796,196 - PfGW456L13_699 0.52 -0.8
796,196 - PfGW456L13_699 0.52 -0.8
796,296 - PfGW456L13_699 0.57 +1.3
796,487 - PfGW456L13_699 0.67 +0.7
796,528 + PfGW456L13_699 0.69 -0.1
796,528 + PfGW456L13_699 0.69 -0.7
796,528 + PfGW456L13_699 0.69 +0.1
796,528 + PfGW456L13_699 0.69 -0.1
796,528 + PfGW456L13_699 0.69 -1.4
796,528 + PfGW456L13_699 0.69 -0.3
796,528 + PfGW456L13_699 0.69 +1.2
796,528 + PfGW456L13_699 0.69 -2.4
796,528 + PfGW456L13_699 0.69 +0.9
796,528 + PfGW456L13_699 0.69 +0.2
796,529 - PfGW456L13_699 0.69 -0.7
796,529 - PfGW456L13_699 0.69 -0.5
796,529 - PfGW456L13_699 0.69 -1.4
796,529 - PfGW456L13_699 0.69 -1.5
796,529 - PfGW456L13_699 0.69 -0.2
796,529 - PfGW456L13_699 0.69 +0.2
796,529 - PfGW456L13_699 0.69 +0.6
796,530 + PfGW456L13_699 0.69 +1.6
796,530 + PfGW456L13_699 0.69 -0.3
796,530 + PfGW456L13_699 0.69 -1.8
796,544 + PfGW456L13_699 0.70 -1.2
796,544 + PfGW456L13_699 0.70 +0.1
796,544 + +1.6
796,544 + PfGW456L13_699 0.70 +0.1
796,545 - PfGW456L13_699 0.70 +1.6
796,545 - PfGW456L13_699 0.70 +0.8
796,545 - PfGW456L13_699 0.70 +0.5
796,545 - PfGW456L13_699 0.70 -0.8
796,756 + PfGW456L13_699 0.80 -0.3
796,757 - PfGW456L13_699 0.80 +1.1
796,830 + PfGW456L13_699 0.84 -0.7
796,830 + PfGW456L13_699 0.84 +0.7
796,831 - PfGW456L13_699 0.84 +1.3
796,948 + PfGW456L13_699 0.90 +1.9
796,948 + PfGW456L13_699 0.90 -0.5
796,948 + PfGW456L13_699 0.90 +0.5
796,948 + PfGW456L13_699 0.90 +0.9
796,949 - PfGW456L13_699 0.90 +0.1
796,949 - PfGW456L13_699 0.90 +0.2
796,984 + -1.2
796,985 - -0.2
796,985 - -2.8
796,985 - +0.8
796,985 - +1.3
796,985 - -0.5
796,985 - +0.4
796,985 - +2.1
796,985 - -0.3
797,082 + +0.2
797,082 + +0.1
797,082 + +0.3
797,082 + -0.8
797,082 + +0.0
797,083 - -0.3
797,460 - PfGW456L13_700 0.30 -0.2
797,523 + PfGW456L13_700 0.36 +0.8
797,523 + PfGW456L13_700 0.36 -0.2
797,524 - PfGW456L13_700 0.37 -0.9
797,524 - PfGW456L13_700 0.37 +0.6
797,524 - PfGW456L13_700 0.37 -1.6
797,524 - PfGW456L13_700 0.37 +0.9
797,681 + PfGW456L13_700 0.52 +0.7
797,681 + PfGW456L13_700 0.52 -1.0
797,682 - PfGW456L13_700 0.52 +0.3
797,682 - PfGW456L13_700 0.52 +0.7
797,682 - PfGW456L13_700 0.52 -0.4
797,698 + PfGW456L13_700 0.53 +0.4
797,699 - PfGW456L13_700 0.53 +0.6
797,737 + PfGW456L13_700 0.57 +1.0
797,737 + PfGW456L13_700 0.57 -1.9
797,737 + PfGW456L13_700 0.57 -1.3
797,737 + PfGW456L13_700 0.57 -2.8
797,738 - PfGW456L13_700 0.57 +0.5
797,738 - PfGW456L13_700 0.57 +0.1
797,738 - PfGW456L13_700 0.57 -1.2
797,738 - PfGW456L13_700 0.57 -0.7
797,738 - PfGW456L13_700 0.57 +0.7
797,760 + PfGW456L13_700 0.59 -0.8
797,760 + PfGW456L13_700 0.59 -1.1
797,760 + PfGW456L13_700 0.59 -0.3
797,760 + PfGW456L13_700 0.59 -0.1
797,760 + PfGW456L13_700 0.59 +0.7
797,760 + PfGW456L13_700 0.59 +0.4
797,760 + PfGW456L13_700 0.59 -0.4
797,760 + PfGW456L13_700 0.59 -1.3
797,760 + PfGW456L13_700 0.59 +0.8
797,760 + PfGW456L13_700 0.59 -2.0
797,760 + PfGW456L13_700 0.59 +0.7
797,760 + PfGW456L13_700 0.59 +0.9
797,760 + PfGW456L13_700 0.59 -1.1
797,760 + PfGW456L13_700 0.59 -1.5
797,761 - PfGW456L13_700 0.59 -1.2
797,761 - PfGW456L13_700 0.59 +0.9
797,761 - PfGW456L13_700 0.59 -0.2
797,761 - PfGW456L13_700 0.59 +1.1
797,761 - PfGW456L13_700 0.59 -0.1
797,761 - PfGW456L13_700 0.59 -0.1
797,864 + PfGW456L13_700 0.69 -0.7
797,865 - PfGW456L13_700 0.69 +1.3
797,969 + PfGW456L13_700 0.79 +0.1
798,006 + PfGW456L13_700 0.83 -1.6
798,007 - PfGW456L13_700 0.83 -0.0
798,039 + PfGW456L13_700 0.86 +1.1
798,039 + PfGW456L13_700 0.86 +0.5
798,040 - PfGW456L13_700 0.86 -0.5
798,040 - PfGW456L13_700 0.86 -0.6
798,257 + +0.8
798,258 - -1.5
798,546 - PfGW456L13_701 0.35 +1.4
798,552 + PfGW456L13_701 0.35 -0.2
798,596 + PfGW456L13_701 0.39 +0.6
798,597 - PfGW456L13_701 0.39 +0.3
798,615 - PfGW456L13_701 0.41 -0.4
798,616 + PfGW456L13_701 0.41 -0.4
798,616 + PfGW456L13_701 0.41 -0.4
798,616 + PfGW456L13_701 0.41 +0.1
798,616 + PfGW456L13_701 0.41 +1.1
798,616 + PfGW456L13_701 0.41 +0.7
798,616 + PfGW456L13_701 0.41 +0.3
798,617 - PfGW456L13_701 0.41 -1.1
798,617 - PfGW456L13_701 0.41 -1.1
798,617 - PfGW456L13_701 0.41 -0.5
798,617 - PfGW456L13_701 0.41 -1.2
798,617 - PfGW456L13_701 0.41 -1.9
798,617 - PfGW456L13_701 0.41 +1.6
798,712 + PfGW456L13_701 0.50 -0.5
798,713 - PfGW456L13_701 0.50 -0.3
798,713 - PfGW456L13_701 0.50 -1.1
799,010 - PfGW456L13_701 0.78 -1.8
799,014 + PfGW456L13_701 0.79 +1.4
799,014 + PfGW456L13_701 0.79 +0.7
799,014 + PfGW456L13_701 0.79 -0.4
799,015 - PfGW456L13_701 0.79 +0.7
799,015 - PfGW456L13_701 0.79 +0.4
799,015 - PfGW456L13_701 0.79 -1.0
799,015 - PfGW456L13_701 0.79 -0.4
799,066 + PfGW456L13_701 0.84 -0.0
799,067 - PfGW456L13_701 0.84 +0.2
799,077 + PfGW456L13_701 0.85 +0.8
799,077 + PfGW456L13_701 0.85 -0.1
799,077 + PfGW456L13_701 0.85 -1.1
799,078 - PfGW456L13_701 0.85 +0.1
799,078 - PfGW456L13_701 0.85 -0.0
799,078 - PfGW456L13_701 0.85 -0.2
799,136 + +1.1

Or see this region's nucleotide sequence