Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_644

Experiment: Aluminum chloride 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_643 and PfGW456L13_644 are separated by 108 nucleotidesPfGW456L13_644 and PfGW456L13_645 are separated by 13 nucleotides PfGW456L13_643 - Sulfate permease, at 733,426 to 734,994 _643 PfGW456L13_644 - Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25), at 735,103 to 735,924 _644 PfGW456L13_645 - Coproporphyrinogen III oxidase, aerobic (EC 1.3.3.3), at 735,938 to 736,852 _645 Position (kb) 735 736Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 734.126 kb on + strand, within PfGW456L13_643at 734.221 kb on - strand, within PfGW456L13_643at 734.231 kb on + strand, within PfGW456L13_643at 734.326 kb on - strand, within PfGW456L13_643at 734.389 kb on + strand, within PfGW456L13_643at 734.389 kb on + strand, within PfGW456L13_643at 734.390 kb on - strand, within PfGW456L13_643at 734.390 kb on - strand, within PfGW456L13_643at 734.641 kb on + strand, within PfGW456L13_643at 734.642 kb on - strand, within PfGW456L13_643at 734.671 kb on + strand, within PfGW456L13_643at 734.770 kb on + strand, within PfGW456L13_643at 734.780 kb on + strand, within PfGW456L13_643at 734.780 kb on + strand, within PfGW456L13_643at 734.780 kb on + strand, within PfGW456L13_643at 734.780 kb on + strand, within PfGW456L13_643at 734.780 kb on + strand, within PfGW456L13_643at 734.780 kb on + strand, within PfGW456L13_643at 734.781 kb on - strand, within PfGW456L13_643at 734.781 kb on - strand, within PfGW456L13_643at 734.781 kb on - strand, within PfGW456L13_643at 734.781 kb on - strand, within PfGW456L13_643at 734.845 kb on + strandat 734.845 kb on + strandat 734.846 kb on - strandat 735.020 kb on + strandat 735.020 kb on + strandat 735.020 kb on + strandat 735.021 kb on - strandat 735.021 kb on - strandat 735.093 kb on + strandat 735.093 kb on + strandat 735.093 kb on + strandat 735.093 kb on + strandat 735.094 kb on - strandat 735.094 kb on - strandat 735.094 kb on - strandat 735.099 kb on + strandat 735.099 kb on + strandat 735.099 kb on + strandat 735.099 kb on + strandat 735.100 kb on - strandat 735.100 kb on - strandat 735.100 kb on - strandat 735.100 kb on - strandat 735.104 kb on + strandat 735.104 kb on + strandat 735.104 kb on + strandat 735.104 kb on + strandat 735.104 kb on + strandat 735.104 kb on + strandat 735.105 kb on - strandat 735.105 kb on - strandat 735.105 kb on - strandat 735.105 kb on - strandat 735.105 kb on - strandat 735.278 kb on + strand, within PfGW456L13_644at 735.278 kb on + strand, within PfGW456L13_644at 735.278 kb on + strand, within PfGW456L13_644at 735.279 kb on - strand, within PfGW456L13_644at 735.279 kb on - strand, within PfGW456L13_644at 735.279 kb on - strand, within PfGW456L13_644at 735.291 kb on - strand, within PfGW456L13_644at 735.291 kb on - strand, within PfGW456L13_644at 735.291 kb on - strand, within PfGW456L13_644at 735.291 kb on - strand, within PfGW456L13_644at 735.291 kb on - strand, within PfGW456L13_644at 735.291 kb on - strand, within PfGW456L13_644at 735.330 kb on + strand, within PfGW456L13_644at 735.331 kb on - strand, within PfGW456L13_644at 735.404 kb on + strand, within PfGW456L13_644at 735.827 kb on + strand, within PfGW456L13_644at 735.827 kb on + strand, within PfGW456L13_644at 735.827 kb on + strand, within PfGW456L13_644at 735.827 kb on + strand, within PfGW456L13_644at 735.828 kb on - strand, within PfGW456L13_644at 735.828 kb on - strand, within PfGW456L13_644at 735.828 kb on - strand, within PfGW456L13_644at 735.908 kb on - strandat 735.914 kb on + strandat 735.914 kb on + strandat 735.914 kb on + strandat 735.914 kb on + strandat 735.915 kb on - strandat 735.915 kb on - strandat 735.915 kb on - strandat 735.915 kb on - strandat 735.915 kb on - strandat 735.915 kb on - strandat 736.921 kb on + strandat 736.922 kb on - strandat 736.922 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 5 mM
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734,126 + PfGW456L13_643 0.45 +0.7
734,221 - PfGW456L13_643 0.51 -1.1
734,231 + PfGW456L13_643 0.51 -1.9
734,326 - PfGW456L13_643 0.57 +1.1
734,389 + PfGW456L13_643 0.61 -0.2
734,389 + PfGW456L13_643 0.61 +0.1
734,390 - PfGW456L13_643 0.61 -2.3
734,390 - PfGW456L13_643 0.61 +0.2
734,641 + PfGW456L13_643 0.77 -1.0
734,642 - PfGW456L13_643 0.78 -2.2
734,671 + PfGW456L13_643 0.79 +0.4
734,770 + PfGW456L13_643 0.86 -2.0
734,780 + PfGW456L13_643 0.86 +0.6
734,780 + PfGW456L13_643 0.86 +0.2
734,780 + PfGW456L13_643 0.86 +0.9
734,780 + PfGW456L13_643 0.86 -0.0
734,780 + PfGW456L13_643 0.86 +0.5
734,780 + PfGW456L13_643 0.86 -1.4
734,781 - PfGW456L13_643 0.86 -0.5
734,781 - PfGW456L13_643 0.86 +2.3
734,781 - PfGW456L13_643 0.86 -0.4
734,781 - PfGW456L13_643 0.86 +0.8
734,845 + -1.8
734,845 + +1.6
734,846 - +1.3
735,020 + +0.7
735,020 + +0.2
735,020 + -0.4
735,021 - +1.3
735,021 - +1.1
735,093 + +0.4
735,093 + -4.1
735,093 + -2.3
735,093 + +0.4
735,094 - +0.6
735,094 - +0.3
735,094 - +1.0
735,099 + -1.7
735,099 + +2.4
735,099 + -0.1
735,099 + -1.3
735,100 - -1.2
735,100 - +0.1
735,100 - +0.8
735,100 - -0.9
735,104 + -0.1
735,104 + +0.6
735,104 + +0.4
735,104 + +0.4
735,104 + +0.4
735,104 + -1.5
735,105 - +2.0
735,105 - +0.0
735,105 - +0.4
735,105 - -0.7
735,105 - -2.4
735,278 + PfGW456L13_644 0.21 -4.0
735,278 + PfGW456L13_644 0.21 -0.1
735,278 + PfGW456L13_644 0.21 -3.8
735,279 - PfGW456L13_644 0.21 -0.8
735,279 - PfGW456L13_644 0.21 -3.3
735,279 - PfGW456L13_644 0.21 -0.4
735,291 - PfGW456L13_644 0.23 -3.2
735,291 - PfGW456L13_644 0.23 -3.8
735,291 - PfGW456L13_644 0.23 -4.7
735,291 - PfGW456L13_644 0.23 -1.7
735,291 - PfGW456L13_644 0.23 -3.1
735,291 - PfGW456L13_644 0.23 -3.4
735,330 + PfGW456L13_644 0.28 -2.6
735,331 - PfGW456L13_644 0.28 -2.1
735,404 + PfGW456L13_644 0.37 -1.2
735,827 + PfGW456L13_644 0.88 -3.2
735,827 + PfGW456L13_644 0.88 -3.5
735,827 + PfGW456L13_644 0.88 -1.5
735,827 + PfGW456L13_644 0.88 -2.9
735,828 - PfGW456L13_644 0.88 -3.7
735,828 - PfGW456L13_644 0.88 -3.0
735,828 - PfGW456L13_644 0.88 -0.3
735,908 - -1.4
735,914 + -3.1
735,914 + -4.0
735,914 + -2.9
735,914 + -2.9
735,915 - -0.2
735,915 - -1.1
735,915 - -0.3
735,915 - -0.3
735,915 - +0.2
735,915 - -2.6
736,921 + -0.1
736,922 - -0.2
736,922 - -2.8

Or see this region's nucleotide sequence