Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_5203

Experiment: Aluminum chloride 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_5202 and PfGW456L13_5203 are separated by 153 nucleotidesPfGW456L13_5203 and PfGW456L13_2323 are separated by 276 nucleotides PfGW456L13_5202 - Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA, at 2,549,633 to 2,552,525 _5202 PfGW456L13_5203 - 5S RNA, at 2,552,679 to 2,552,798 _5203 PfGW456L13_2323 - Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129), at 2,553,075 to 2,554,967 _2323 Position (kb) 2552 2553Strain fitness (log2 ratio) -3 -2 -1 0 1at 2552.526 kb on + strandat 2552.822 kb on + strandat 2552.856 kb on + strandat 2552.856 kb on + strandat 2552.857 kb on - strandat 2552.857 kb on - strandat 2552.950 kb on + strandat 2552.950 kb on + strandat 2552.951 kb on - strandat 2552.951 kb on - strandat 2552.951 kb on - strandat 2552.977 kb on + strandat 2552.977 kb on + strandat 2552.978 kb on - strandat 2553.001 kb on - strandat 2553.018 kb on + strandat 2553.070 kb on + strandat 2553.070 kb on + strandat 2553.071 kb on - strandat 2553.128 kb on + strandat 2553.128 kb on + strandat 2553.129 kb on - strandat 2553.182 kb on - strandat 2553.192 kb on + strandat 2553.192 kb on + strandat 2553.192 kb on + strandat 2553.192 kb on + strandat 2553.193 kb on - strandat 2553.193 kb on - strandat 2553.220 kb on - strandat 2553.250 kb on + strandat 2553.250 kb on + strandat 2553.250 kb on + strandat 2553.250 kb on + strandat 2553.250 kb on + strandat 2553.251 kb on - strandat 2553.251 kb on - strandat 2553.251 kb on - strandat 2553.251 kb on - strandat 2553.251 kb on - strandat 2553.266 kb on + strand, within PfGW456L13_2323at 2553.267 kb on - strand, within PfGW456L13_2323at 2553.267 kb on - strand, within PfGW456L13_2323at 2553.289 kb on - strand, within PfGW456L13_2323at 2553.330 kb on + strand, within PfGW456L13_2323at 2553.331 kb on - strand, within PfGW456L13_2323at 2553.331 kb on - strand, within PfGW456L13_2323at 2553.331 kb on - strand, within PfGW456L13_2323at 2553.367 kb on + strand, within PfGW456L13_2323at 2553.367 kb on + strand, within PfGW456L13_2323at 2553.368 kb on - strand, within PfGW456L13_2323at 2553.389 kb on - strand, within PfGW456L13_2323at 2553.389 kb on - strand, within PfGW456L13_2323at 2553.483 kb on + strand, within PfGW456L13_2323at 2553.483 kb on + strand, within PfGW456L13_2323at 2553.483 kb on + strand, within PfGW456L13_2323at 2553.484 kb on - strand, within PfGW456L13_2323at 2553.484 kb on - strand, within PfGW456L13_2323at 2553.574 kb on - strand, within PfGW456L13_2323at 2553.574 kb on - strand, within PfGW456L13_2323at 2553.621 kb on - strand, within PfGW456L13_2323

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 5 mM
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2,552,526 + -1.0
2,552,822 + -0.8
2,552,856 + -0.5
2,552,856 + +1.0
2,552,857 - +0.2
2,552,857 - +0.1
2,552,950 + +0.8
2,552,950 + -2.8
2,552,951 - -0.1
2,552,951 - -0.7
2,552,951 - +0.2
2,552,977 + +0.7
2,552,977 + +0.7
2,552,978 - +0.7
2,553,001 - +0.7
2,553,018 + +0.0
2,553,070 + -0.2
2,553,070 + +1.5
2,553,071 - -0.2
2,553,128 + -0.0
2,553,128 + +1.3
2,553,129 - +0.4
2,553,182 - -0.2
2,553,192 + -0.2
2,553,192 + +1.0
2,553,192 + +0.5
2,553,192 + -0.7
2,553,193 - +0.5
2,553,193 - +0.0
2,553,220 - +0.6
2,553,250 + -0.0
2,553,250 + -3.4
2,553,250 + +0.7
2,553,250 + -1.0
2,553,250 + +0.2
2,553,251 - +1.1
2,553,251 - -1.2
2,553,251 - -0.1
2,553,251 - +1.0
2,553,251 - -1.1
2,553,266 + PfGW456L13_2323 0.10 +1.3
2,553,267 - PfGW456L13_2323 0.10 -1.6
2,553,267 - PfGW456L13_2323 0.10 +0.5
2,553,289 - PfGW456L13_2323 0.11 -0.1
2,553,330 + PfGW456L13_2323 0.13 +1.4
2,553,331 - PfGW456L13_2323 0.14 +0.6
2,553,331 - PfGW456L13_2323 0.14 -0.3
2,553,331 - PfGW456L13_2323 0.14 -0.9
2,553,367 + PfGW456L13_2323 0.15 +1.3
2,553,367 + PfGW456L13_2323 0.15 -1.6
2,553,368 - PfGW456L13_2323 0.15 -2.0
2,553,389 - PfGW456L13_2323 0.17 -1.3
2,553,389 - PfGW456L13_2323 0.17 -0.9
2,553,483 + PfGW456L13_2323 0.22 +0.2
2,553,483 + PfGW456L13_2323 0.22 +0.5
2,553,483 + PfGW456L13_2323 0.22 -0.2
2,553,484 - PfGW456L13_2323 0.22 -0.8
2,553,484 - PfGW456L13_2323 0.22 +0.2
2,553,574 - PfGW456L13_2323 0.26 -1.2
2,553,574 - PfGW456L13_2323 0.26 -0.3
2,553,621 - PfGW456L13_2323 0.29 +0.4

Or see this region's nucleotide sequence