Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_5040

Experiment: Aluminum chloride 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_5038 and PfGW456L13_5039 overlap by 4 nucleotidesPfGW456L13_5039 and PfGW456L13_5040 are separated by 213 nucleotidesPfGW456L13_5040 and PfGW456L13_5041 overlap by 4 nucleotides PfGW456L13_5038 - K+-dependent Na+/Ca+ exchanger related-protein, at 5,613,947 to 5,615,008 _5038 PfGW456L13_5039 - 4-carboxymuconolactone decarboxylase (EC 4.1.1.44), at 5,615,005 to 5,615,385 _5039 PfGW456L13_5040 - PhoP/Q-regulated protein PqaA, at 5,615,599 to 5,617,080 _5040 PfGW456L13_5041 - membrane protein, putative, at 5,617,077 to 5,618,018 _5041 Position (kb) 5615 5616 5617 5618Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 5614.611 kb on + strand, within PfGW456L13_5038at 5614.698 kb on + strand, within PfGW456L13_5038at 5614.790 kb on + strand, within PfGW456L13_5038at 5614.791 kb on - strand, within PfGW456L13_5038at 5614.791 kb on - strand, within PfGW456L13_5038at 5614.791 kb on - strand, within PfGW456L13_5038at 5614.791 kb on - strand, within PfGW456L13_5038at 5614.841 kb on + strand, within PfGW456L13_5038at 5614.842 kb on - strand, within PfGW456L13_5038at 5614.842 kb on - strand, within PfGW456L13_5038at 5614.842 kb on - strand, within PfGW456L13_5038at 5614.851 kb on - strand, within PfGW456L13_5038at 5614.851 kb on - strand, within PfGW456L13_5038at 5614.851 kb on - strand, within PfGW456L13_5038at 5614.921 kb on - strandat 5614.990 kb on + strandat 5614.990 kb on + strandat 5614.991 kb on - strandat 5614.991 kb on - strandat 5614.991 kb on - strandat 5614.991 kb on - strandat 5614.991 kb on - strandat 5614.991 kb on - strandat 5615.308 kb on + strand, within PfGW456L13_5039at 5615.308 kb on + strand, within PfGW456L13_5039at 5615.308 kb on + strand, within PfGW456L13_5039at 5615.309 kb on - strand, within PfGW456L13_5039at 5615.309 kb on - strand, within PfGW456L13_5039at 5615.309 kb on - strand, within PfGW456L13_5039at 5615.369 kb on - strandat 5615.448 kb on + strandat 5615.448 kb on + strandat 5615.448 kb on + strandat 5615.448 kb on + strandat 5615.449 kb on - strandat 5615.449 kb on - strandat 5615.449 kb on - strandat 5615.449 kb on - strandat 5615.459 kb on + strandat 5615.459 kb on + strandat 5615.459 kb on + strandat 5615.459 kb on + strandat 5615.460 kb on - strandat 5615.583 kb on + strandat 5615.583 kb on + strandat 5615.583 kb on + strandat 5615.583 kb on + strandat 5615.584 kb on - strandat 5615.584 kb on - strandat 5615.584 kb on - strandat 5615.621 kb on + strandat 5615.622 kb on - strandat 5615.622 kb on - strandat 5615.666 kb on + strandat 5615.666 kb on + strandat 5615.666 kb on + strandat 5615.667 kb on - strandat 5615.667 kb on - strandat 5615.667 kb on - strandat 5615.667 kb on - strandat 5615.667 kb on - strandat 5615.732 kb on - strandat 5615.732 kb on - strandat 5615.732 kb on - strandat 5615.732 kb on - strandat 5615.764 kb on + strand, within PfGW456L13_5040at 5615.765 kb on - strand, within PfGW456L13_5040at 5615.765 kb on - strand, within PfGW456L13_5040at 5615.887 kb on + strand, within PfGW456L13_5040at 5615.887 kb on + strand, within PfGW456L13_5040at 5615.887 kb on + strand, within PfGW456L13_5040at 5615.887 kb on + strand, within PfGW456L13_5040at 5615.887 kb on + strand, within PfGW456L13_5040at 5615.887 kb on + strand, within PfGW456L13_5040at 5615.887 kb on + strand, within PfGW456L13_5040at 5615.887 kb on + strand, within PfGW456L13_5040at 5615.887 kb on + strand, within PfGW456L13_5040at 5615.887 kb on + strand, within PfGW456L13_5040at 5615.888 kb on - strand, within PfGW456L13_5040at 5615.888 kb on - strand, within PfGW456L13_5040at 5615.888 kb on - strand, within PfGW456L13_5040at 5615.888 kb on - strand, within PfGW456L13_5040at 5615.888 kb on - strand, within PfGW456L13_5040at 5615.888 kb on - strand, within PfGW456L13_5040at 5615.888 kb on - strand, within PfGW456L13_5040at 5615.888 kb on - strand, within PfGW456L13_5040at 5615.888 kb on - strand, within PfGW456L13_5040at 5616.061 kb on + strand, within PfGW456L13_5040at 5616.062 kb on - strand, within PfGW456L13_5040at 5616.070 kb on + strand, within PfGW456L13_5040at 5616.070 kb on + strand, within PfGW456L13_5040at 5616.071 kb on - strand, within PfGW456L13_5040at 5616.157 kb on + strand, within PfGW456L13_5040at 5616.157 kb on + strand, within PfGW456L13_5040at 5616.157 kb on + strand, within PfGW456L13_5040at 5616.158 kb on - strand, within PfGW456L13_5040at 5616.158 kb on - strand, within PfGW456L13_5040at 5616.158 kb on - strand, within PfGW456L13_5040at 5616.158 kb on - strand, within PfGW456L13_5040at 5616.158 kb on - strand, within PfGW456L13_5040at 5616.158 kb on - strand, within PfGW456L13_5040at 5616.158 kb on - strand, within PfGW456L13_5040at 5616.158 kb on - strand, within PfGW456L13_5040at 5616.158 kb on - strand, within PfGW456L13_5040at 5616.240 kb on - strand, within PfGW456L13_5040at 5616.240 kb on - strand, within PfGW456L13_5040at 5616.240 kb on - strand, within PfGW456L13_5040at 5616.345 kb on - strand, within PfGW456L13_5040at 5616.345 kb on - strand, within PfGW456L13_5040at 5616.345 kb on - strand, within PfGW456L13_5040at 5616.372 kb on + strand, within PfGW456L13_5040at 5616.372 kb on + strand, within PfGW456L13_5040at 5616.373 kb on - strand, within PfGW456L13_5040at 5616.373 kb on - strand, within PfGW456L13_5040at 5616.373 kb on - strand, within PfGW456L13_5040at 5616.373 kb on - strand, within PfGW456L13_5040at 5616.419 kb on - strand, within PfGW456L13_5040at 5616.538 kb on + strand, within PfGW456L13_5040at 5616.539 kb on - strand, within PfGW456L13_5040at 5616.589 kb on + strand, within PfGW456L13_5040at 5616.589 kb on + strand, within PfGW456L13_5040at 5616.589 kb on + strand, within PfGW456L13_5040at 5616.818 kb on + strand, within PfGW456L13_5040at 5616.862 kb on + strand, within PfGW456L13_5040at 5616.878 kb on + strand, within PfGW456L13_5040at 5616.878 kb on + strand, within PfGW456L13_5040at 5616.879 kb on - strand, within PfGW456L13_5040at 5617.079 kb on - strandat 5617.234 kb on + strand, within PfGW456L13_5041at 5617.472 kb on - strand, within PfGW456L13_5041at 5617.529 kb on + strand, within PfGW456L13_5041at 5617.530 kb on - strand, within PfGW456L13_5041at 5617.530 kb on - strand, within PfGW456L13_5041at 5617.567 kb on + strand, within PfGW456L13_5041at 5617.567 kb on + strand, within PfGW456L13_5041at 5617.567 kb on + strand, within PfGW456L13_5041at 5617.568 kb on - strand, within PfGW456L13_5041at 5617.568 kb on - strand, within PfGW456L13_5041at 5617.568 kb on - strand, within PfGW456L13_5041at 5617.600 kb on + strand, within PfGW456L13_5041at 5617.600 kb on + strand, within PfGW456L13_5041at 5617.600 kb on + strand, within PfGW456L13_5041at 5617.600 kb on + strand, within PfGW456L13_5041at 5617.600 kb on + strand, within PfGW456L13_5041at 5617.601 kb on - strand, within PfGW456L13_5041at 5617.601 kb on - strand, within PfGW456L13_5041at 5617.657 kb on + strand, within PfGW456L13_5041at 5617.658 kb on - strand, within PfGW456L13_5041at 5617.658 kb on - strand, within PfGW456L13_5041at 5617.658 kb on - strand, within PfGW456L13_5041at 5617.658 kb on - strand, within PfGW456L13_5041at 5617.658 kb on - strand, within PfGW456L13_5041at 5617.698 kb on - strand, within PfGW456L13_5041at 5617.720 kb on + strand, within PfGW456L13_5041at 5617.720 kb on + strand, within PfGW456L13_5041at 5617.721 kb on - strand, within PfGW456L13_5041at 5617.721 kb on - strand, within PfGW456L13_5041at 5617.721 kb on - strand, within PfGW456L13_5041at 5617.721 kb on - strand, within PfGW456L13_5041at 5617.721 kb on - strand, within PfGW456L13_5041at 5617.804 kb on + strand, within PfGW456L13_5041at 5617.804 kb on + strand, within PfGW456L13_5041at 5617.805 kb on - strand, within PfGW456L13_5041at 5617.805 kb on - strand, within PfGW456L13_5041at 5617.805 kb on - strand, within PfGW456L13_5041at 5617.825 kb on - strand, within PfGW456L13_5041at 5618.056 kb on + strandat 5618.056 kb on + strandat 5618.057 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 5 mM
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5,614,611 + PfGW456L13_5038 0.63 -2.6
5,614,698 + PfGW456L13_5038 0.71 +0.1
5,614,790 + PfGW456L13_5038 0.79 -0.3
5,614,791 - PfGW456L13_5038 0.79 -0.3
5,614,791 - PfGW456L13_5038 0.79 -0.9
5,614,791 - PfGW456L13_5038 0.79 -0.0
5,614,791 - PfGW456L13_5038 0.79 +0.2
5,614,841 + PfGW456L13_5038 0.84 +0.1
5,614,842 - PfGW456L13_5038 0.84 +0.3
5,614,842 - PfGW456L13_5038 0.84 -0.0
5,614,842 - PfGW456L13_5038 0.84 -0.8
5,614,851 - PfGW456L13_5038 0.85 +0.5
5,614,851 - PfGW456L13_5038 0.85 -0.9
5,614,851 - PfGW456L13_5038 0.85 -0.5
5,614,921 - -0.3
5,614,990 + +0.2
5,614,990 + +0.6
5,614,991 - -0.8
5,614,991 - +1.2
5,614,991 - -1.5
5,614,991 - +0.3
5,614,991 - -0.9
5,614,991 - -0.1
5,615,308 + PfGW456L13_5039 0.80 +0.2
5,615,308 + PfGW456L13_5039 0.80 +1.3
5,615,308 + PfGW456L13_5039 0.80 -0.1
5,615,309 - PfGW456L13_5039 0.80 +0.3
5,615,309 - PfGW456L13_5039 0.80 +1.3
5,615,309 - PfGW456L13_5039 0.80 +1.3
5,615,369 - -2.3
5,615,448 + +1.0
5,615,448 + -0.5
5,615,448 + -0.4
5,615,448 + -1.4
5,615,449 - -3.8
5,615,449 - -0.3
5,615,449 - +0.1
5,615,449 - -0.8
5,615,459 + +0.3
5,615,459 + -0.1
5,615,459 + -0.5
5,615,459 + -0.0
5,615,460 - +2.0
5,615,583 + +0.8
5,615,583 + -0.6
5,615,583 + -1.4
5,615,583 + +1.1
5,615,584 - -0.6
5,615,584 - -2.6
5,615,584 - -0.2
5,615,621 + +0.4
5,615,622 - -0.0
5,615,622 - -1.9
5,615,666 + -2.1
5,615,666 + +1.0
5,615,666 + +0.1
5,615,667 - +1.1
5,615,667 - -1.9
5,615,667 - -0.0
5,615,667 - -0.7
5,615,667 - +0.4
5,615,732 - +0.1
5,615,732 - -0.5
5,615,732 - -0.3
5,615,732 - +0.5
5,615,764 + PfGW456L13_5040 0.11 -0.1
5,615,765 - PfGW456L13_5040 0.11 -0.9
5,615,765 - PfGW456L13_5040 0.11 -0.7
5,615,887 + PfGW456L13_5040 0.19 -0.9
5,615,887 + PfGW456L13_5040 0.19 +1.0
5,615,887 + PfGW456L13_5040 0.19 -2.2
5,615,887 + PfGW456L13_5040 0.19 +0.5
5,615,887 + PfGW456L13_5040 0.19 +0.1
5,615,887 + PfGW456L13_5040 0.19 +0.3
5,615,887 + PfGW456L13_5040 0.19 +0.8
5,615,887 + PfGW456L13_5040 0.19 -0.5
5,615,887 + PfGW456L13_5040 0.19 -0.9
5,615,887 + PfGW456L13_5040 0.19 +0.8
5,615,888 - PfGW456L13_5040 0.20 +0.7
5,615,888 - PfGW456L13_5040 0.20 +0.7
5,615,888 - PfGW456L13_5040 0.20 -1.6
5,615,888 - PfGW456L13_5040 0.20 -2.0
5,615,888 - PfGW456L13_5040 0.20 -0.2
5,615,888 - PfGW456L13_5040 0.20 -0.7
5,615,888 - PfGW456L13_5040 0.20 -1.1
5,615,888 - PfGW456L13_5040 0.20 -1.7
5,615,888 - PfGW456L13_5040 0.20 -2.0
5,616,061 + PfGW456L13_5040 0.31 -1.6
5,616,062 - PfGW456L13_5040 0.31 -0.1
5,616,070 + PfGW456L13_5040 0.32 +1.5
5,616,070 + PfGW456L13_5040 0.32 +0.6
5,616,071 - PfGW456L13_5040 0.32 +0.7
5,616,157 + PfGW456L13_5040 0.38 +2.7
5,616,157 + PfGW456L13_5040 0.38 -0.3
5,616,157 + PfGW456L13_5040 0.38 -0.2
5,616,158 - PfGW456L13_5040 0.38 -0.3
5,616,158 - PfGW456L13_5040 0.38 -1.4
5,616,158 - PfGW456L13_5040 0.38 -0.3
5,616,158 - PfGW456L13_5040 0.38 -0.9
5,616,158 - PfGW456L13_5040 0.38 +0.6
5,616,158 - PfGW456L13_5040 0.38 -2.4
5,616,158 - PfGW456L13_5040 0.38 -0.5
5,616,158 - PfGW456L13_5040 0.38 -0.3
5,616,158 - PfGW456L13_5040 0.38 +0.7
5,616,240 - PfGW456L13_5040 0.43 -1.7
5,616,240 - PfGW456L13_5040 0.43 +1.1
5,616,240 - PfGW456L13_5040 0.43 +0.3
5,616,345 - PfGW456L13_5040 0.50 +0.5
5,616,345 - PfGW456L13_5040 0.50 +1.3
5,616,345 - PfGW456L13_5040 0.50 +0.6
5,616,372 + PfGW456L13_5040 0.52 -1.3
5,616,372 + PfGW456L13_5040 0.52 +0.2
5,616,373 - PfGW456L13_5040 0.52 -0.0
5,616,373 - PfGW456L13_5040 0.52 -2.3
5,616,373 - PfGW456L13_5040 0.52 -1.1
5,616,373 - PfGW456L13_5040 0.52 -0.1
5,616,419 - PfGW456L13_5040 0.55 -2.2
5,616,538 + PfGW456L13_5040 0.63 -1.1
5,616,539 - PfGW456L13_5040 0.63 -0.7
5,616,589 + PfGW456L13_5040 0.67 +0.0
5,616,589 + PfGW456L13_5040 0.67 -1.0
5,616,589 + PfGW456L13_5040 0.67 -0.6
5,616,818 + PfGW456L13_5040 0.82 -0.9
5,616,862 + PfGW456L13_5040 0.85 +0.8
5,616,878 + PfGW456L13_5040 0.86 -0.2
5,616,878 + PfGW456L13_5040 0.86 +0.1
5,616,879 - PfGW456L13_5040 0.86 -1.1
5,617,079 - -0.3
5,617,234 + PfGW456L13_5041 0.17 +0.6
5,617,472 - PfGW456L13_5041 0.42 +1.3
5,617,529 + PfGW456L13_5041 0.48 +0.2
5,617,530 - PfGW456L13_5041 0.48 -4.2
5,617,530 - PfGW456L13_5041 0.48 -0.4
5,617,567 + PfGW456L13_5041 0.52 +0.6
5,617,567 + PfGW456L13_5041 0.52 -0.1
5,617,567 + PfGW456L13_5041 0.52 -1.1
5,617,568 - PfGW456L13_5041 0.52 +0.7
5,617,568 - PfGW456L13_5041 0.52 +0.8
5,617,568 - PfGW456L13_5041 0.52 -0.5
5,617,600 + PfGW456L13_5041 0.56 -0.1
5,617,600 + PfGW456L13_5041 0.56 -0.0
5,617,600 + PfGW456L13_5041 0.56 -0.0
5,617,600 + PfGW456L13_5041 0.56 +1.1
5,617,600 + PfGW456L13_5041 0.56 -0.0
5,617,601 - PfGW456L13_5041 0.56 -1.7
5,617,601 - PfGW456L13_5041 0.56 +0.1
5,617,657 + PfGW456L13_5041 0.62 +0.3
5,617,658 - PfGW456L13_5041 0.62 -0.4
5,617,658 - PfGW456L13_5041 0.62 -0.1
5,617,658 - PfGW456L13_5041 0.62 +0.9
5,617,658 - PfGW456L13_5041 0.62 -0.1
5,617,658 - PfGW456L13_5041 0.62 +0.2
5,617,698 - PfGW456L13_5041 0.66 +0.6
5,617,720 + PfGW456L13_5041 0.68 +0.3
5,617,720 + PfGW456L13_5041 0.68 +0.0
5,617,721 - PfGW456L13_5041 0.68 -0.1
5,617,721 - PfGW456L13_5041 0.68 -0.2
5,617,721 - PfGW456L13_5041 0.68 +0.3
5,617,721 - PfGW456L13_5041 0.68 +0.9
5,617,721 - PfGW456L13_5041 0.68 +0.2
5,617,804 + PfGW456L13_5041 0.77 -0.5
5,617,804 + PfGW456L13_5041 0.77 -0.3
5,617,805 - PfGW456L13_5041 0.77 +0.7
5,617,805 - PfGW456L13_5041 0.77 +1.7
5,617,805 - PfGW456L13_5041 0.77 +0.5
5,617,825 - PfGW456L13_5041 0.79 -1.2
5,618,056 + +0.4
5,618,056 + +1.4
5,618,057 - -1.6

Or see this region's nucleotide sequence