Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_5017

Experiment: Aluminum chloride 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_5014 and PfGW456L13_5015 are separated by 74 nucleotidesPfGW456L13_5015 and PfGW456L13_5016 are separated by 60 nucleotidesPfGW456L13_5016 and PfGW456L13_5017 are separated by 2 nucleotidesPfGW456L13_5017 and PfGW456L13_5018 are separated by 15 nucleotidesPfGW456L13_5018 and PfGW456L13_5019 are separated by 28 nucleotides PfGW456L13_5014 - RNA polymerase sigma-54 factor RpoN, at 5,589,078 to 5,590,547 _5014 PfGW456L13_5015 - Ribosome hibernation protein YhbH, at 5,590,622 to 5,590,930 _5015 PfGW456L13_5016 - PTS IIA-like nitrogen-regulatory protein PtsN, at 5,590,991 to 5,591,407 _5016 PfGW456L13_5017 - Hypothetical ATP-binding protein UPF0042, contains P-loop, at 5,591,410 to 5,592,267 _5017 PfGW456L13_5018 - Phosphocarrier protein, nitrogen regulation associated, at 5,592,283 to 5,592,555 _5018 PfGW456L13_5019 - Metal transporter, ZIP family, at 5,592,584 to 5,593,477 _5019 Position (kb) 5591 5592 5593Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 5590.545 kb on + strandat 5590.545 kb on + strandat 5590.572 kb on + strandat 5590.586 kb on + strandat 5590.594 kb on + strandat 5590.621 kb on + strandat 5590.621 kb on + strandat 5590.676 kb on + strand, within PfGW456L13_5015at 5590.676 kb on + strand, within PfGW456L13_5015at 5590.676 kb on + strand, within PfGW456L13_5015at 5590.726 kb on + strand, within PfGW456L13_5015at 5590.786 kb on + strand, within PfGW456L13_5015at 5590.786 kb on + strand, within PfGW456L13_5015at 5590.786 kb on + strand, within PfGW456L13_5015at 5590.822 kb on + strand, within PfGW456L13_5015at 5590.828 kb on + strand, within PfGW456L13_5015at 5590.832 kb on + strand, within PfGW456L13_5015at 5590.832 kb on + strand, within PfGW456L13_5015at 5590.832 kb on + strand, within PfGW456L13_5015at 5590.832 kb on + strand, within PfGW456L13_5015at 5590.832 kb on + strand, within PfGW456L13_5015at 5590.832 kb on + strand, within PfGW456L13_5015at 5590.832 kb on + strand, within PfGW456L13_5015at 5590.832 kb on + strand, within PfGW456L13_5015at 5590.832 kb on + strand, within PfGW456L13_5015at 5590.832 kb on + strand, within PfGW456L13_5015at 5590.832 kb on + strand, within PfGW456L13_5015at 5590.832 kb on + strand, within PfGW456L13_5015at 5590.832 kb on + strand, within PfGW456L13_5015at 5590.832 kb on + strand, within PfGW456L13_5015at 5590.832 kb on + strand, within PfGW456L13_5015at 5590.832 kb on + strand, within PfGW456L13_5015at 5590.832 kb on + strand, within PfGW456L13_5015at 5590.832 kb on + strand, within PfGW456L13_5015at 5590.832 kb on + strand, within PfGW456L13_5015at 5590.832 kb on + strand, within PfGW456L13_5015at 5590.885 kb on + strand, within PfGW456L13_5015at 5590.885 kb on + strand, within PfGW456L13_5015at 5591.405 kb on + strandat 5591.406 kb on - strandat 5591.449 kb on - strandat 5591.488 kb on + strandat 5591.489 kb on - strandat 5591.550 kb on + strand, within PfGW456L13_5017at 5591.551 kb on - strand, within PfGW456L13_5017at 5591.832 kb on + strand, within PfGW456L13_5017at 5591.833 kb on - strand, within PfGW456L13_5017at 5591.833 kb on - strand, within PfGW456L13_5017at 5591.833 kb on - strand, within PfGW456L13_5017at 5591.848 kb on + strand, within PfGW456L13_5017at 5591.849 kb on - strand, within PfGW456L13_5017at 5591.849 kb on - strand, within PfGW456L13_5017at 5592.046 kb on + strand, within PfGW456L13_5017at 5592.097 kb on + strand, within PfGW456L13_5017at 5592.104 kb on + strand, within PfGW456L13_5017at 5592.265 kb on + strandat 5592.266 kb on - strandat 5592.312 kb on + strand, within PfGW456L13_5018at 5592.312 kb on + strand, within PfGW456L13_5018at 5592.312 kb on + strand, within PfGW456L13_5018at 5592.312 kb on + strand, within PfGW456L13_5018at 5592.313 kb on - strand, within PfGW456L13_5018at 5592.356 kb on + strand, within PfGW456L13_5018at 5592.356 kb on + strand, within PfGW456L13_5018at 5592.393 kb on + strand, within PfGW456L13_5018at 5592.393 kb on + strand, within PfGW456L13_5018at 5592.394 kb on - strand, within PfGW456L13_5018at 5592.394 kb on - strand, within PfGW456L13_5018at 5592.394 kb on - strand, within PfGW456L13_5018at 5592.394 kb on - strand, within PfGW456L13_5018at 5592.477 kb on + strand, within PfGW456L13_5018at 5592.478 kb on - strand, within PfGW456L13_5018at 5592.478 kb on - strand, within PfGW456L13_5018at 5592.556 kb on + strandat 5592.556 kb on + strandat 5592.556 kb on + strandat 5592.556 kb on + strandat 5592.556 kb on + strandat 5592.556 kb on + strandat 5592.556 kb on + strandat 5592.556 kb on + strandat 5592.556 kb on + strandat 5592.556 kb on + strandat 5592.556 kb on + strandat 5592.556 kb on + strandat 5592.556 kb on + strandat 5592.557 kb on - strandat 5592.557 kb on - strandat 5592.557 kb on - strandat 5592.557 kb on - strandat 5592.557 kb on - strandat 5592.557 kb on - strandat 5592.557 kb on - strandat 5592.557 kb on - strandat 5592.557 kb on - strandat 5592.557 kb on - strandat 5592.557 kb on - strandat 5592.557 kb on - strandat 5592.557 kb on - strandat 5592.557 kb on - strandat 5592.776 kb on + strand, within PfGW456L13_5019at 5592.776 kb on + strand, within PfGW456L13_5019at 5592.776 kb on + strand, within PfGW456L13_5019at 5592.797 kb on + strand, within PfGW456L13_5019at 5592.797 kb on + strand, within PfGW456L13_5019at 5592.797 kb on + strand, within PfGW456L13_5019at 5592.797 kb on + strand, within PfGW456L13_5019at 5592.887 kb on + strand, within PfGW456L13_5019at 5592.957 kb on - strand, within PfGW456L13_5019at 5592.998 kb on + strand, within PfGW456L13_5019at 5592.998 kb on + strand, within PfGW456L13_5019at 5593.114 kb on + strand, within PfGW456L13_5019at 5593.114 kb on + strand, within PfGW456L13_5019at 5593.114 kb on + strand, within PfGW456L13_5019at 5593.115 kb on - strand, within PfGW456L13_5019at 5593.252 kb on + strand, within PfGW456L13_5019at 5593.252 kb on + strand, within PfGW456L13_5019at 5593.253 kb on - strand, within PfGW456L13_5019

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 5 mM
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5,590,545 + +0.3
5,590,545 + -0.1
5,590,572 + -1.4
5,590,586 + +0.8
5,590,594 + -0.2
5,590,621 + +1.2
5,590,621 + -0.2
5,590,676 + PfGW456L13_5015 0.17 -2.0
5,590,676 + PfGW456L13_5015 0.17 -0.8
5,590,676 + PfGW456L13_5015 0.17 -0.5
5,590,726 + PfGW456L13_5015 0.34 -2.6
5,590,786 + PfGW456L13_5015 0.53 -0.6
5,590,786 + PfGW456L13_5015 0.53 +0.9
5,590,786 + PfGW456L13_5015 0.53 +0.2
5,590,822 + PfGW456L13_5015 0.65 +0.9
5,590,828 + PfGW456L13_5015 0.67 -0.0
5,590,832 + PfGW456L13_5015 0.68 +0.0
5,590,832 + PfGW456L13_5015 0.68 -0.8
5,590,832 + PfGW456L13_5015 0.68 +0.0
5,590,832 + PfGW456L13_5015 0.68 +0.4
5,590,832 + PfGW456L13_5015 0.68 +0.5
5,590,832 + PfGW456L13_5015 0.68 -0.1
5,590,832 + PfGW456L13_5015 0.68 +0.8
5,590,832 + PfGW456L13_5015 0.68 +0.7
5,590,832 + PfGW456L13_5015 0.68 +0.3
5,590,832 + PfGW456L13_5015 0.68 -0.3
5,590,832 + PfGW456L13_5015 0.68 +0.3
5,590,832 + PfGW456L13_5015 0.68 +0.8
5,590,832 + PfGW456L13_5015 0.68 +1.2
5,590,832 + PfGW456L13_5015 0.68 -0.4
5,590,832 + PfGW456L13_5015 0.68 -0.2
5,590,832 + PfGW456L13_5015 0.68 -1.2
5,590,832 + PfGW456L13_5015 0.68 +0.7
5,590,832 + PfGW456L13_5015 0.68 -0.1
5,590,832 + PfGW456L13_5015 0.68 +0.7
5,590,832 + PfGW456L13_5015 0.68 +1.0
5,590,885 + PfGW456L13_5015 0.85 -0.5
5,590,885 + PfGW456L13_5015 0.85 +0.3
5,591,405 + +1.1
5,591,406 - -1.0
5,591,449 - +0.6
5,591,488 + -2.0
5,591,489 - -1.0
5,591,550 + PfGW456L13_5017 0.16 -3.0
5,591,551 - PfGW456L13_5017 0.16 -1.6
5,591,832 + PfGW456L13_5017 0.49 +0.0
5,591,833 - PfGW456L13_5017 0.49 +1.7
5,591,833 - PfGW456L13_5017 0.49 -2.7
5,591,833 - PfGW456L13_5017 0.49 -1.8
5,591,848 + PfGW456L13_5017 0.51 -1.2
5,591,849 - PfGW456L13_5017 0.51 -3.4
5,591,849 - PfGW456L13_5017 0.51 -1.6
5,592,046 + PfGW456L13_5017 0.74 -1.4
5,592,097 + PfGW456L13_5017 0.80 -1.4
5,592,104 + PfGW456L13_5017 0.81 -2.9
5,592,265 + -0.8
5,592,266 - +0.1
5,592,312 + PfGW456L13_5018 0.11 +0.5
5,592,312 + PfGW456L13_5018 0.11 -2.1
5,592,312 + PfGW456L13_5018 0.11 -1.3
5,592,312 + PfGW456L13_5018 0.11 -3.3
5,592,313 - PfGW456L13_5018 0.11 -2.4
5,592,356 + PfGW456L13_5018 0.27 -1.5
5,592,356 + PfGW456L13_5018 0.27 -1.7
5,592,393 + PfGW456L13_5018 0.40 -3.8
5,592,393 + PfGW456L13_5018 0.40 -1.4
5,592,394 - PfGW456L13_5018 0.41 -2.5
5,592,394 - PfGW456L13_5018 0.41 -2.5
5,592,394 - PfGW456L13_5018 0.41 -0.1
5,592,394 - PfGW456L13_5018 0.41 -2.8
5,592,477 + PfGW456L13_5018 0.71 +0.9
5,592,478 - PfGW456L13_5018 0.71 -3.8
5,592,478 - PfGW456L13_5018 0.71 -3.4
5,592,556 + +1.5
5,592,556 + -1.5
5,592,556 + +0.2
5,592,556 + +1.8
5,592,556 + -0.5
5,592,556 + -1.2
5,592,556 + -0.1
5,592,556 + -1.3
5,592,556 + -2.1
5,592,556 + -0.4
5,592,556 + +0.7
5,592,556 + -0.1
5,592,556 + +0.2
5,592,557 - +0.9
5,592,557 - -0.6
5,592,557 - -0.5
5,592,557 - -1.4
5,592,557 - -0.3
5,592,557 - +0.6
5,592,557 - -2.5
5,592,557 - +2.0
5,592,557 - +1.4
5,592,557 - -0.2
5,592,557 - +2.9
5,592,557 - +0.5
5,592,557 - +1.1
5,592,557 - +1.0
5,592,776 + PfGW456L13_5019 0.21 -1.6
5,592,776 + PfGW456L13_5019 0.21 -0.5
5,592,776 + PfGW456L13_5019 0.21 +0.4
5,592,797 + PfGW456L13_5019 0.24 +0.8
5,592,797 + PfGW456L13_5019 0.24 -0.5
5,592,797 + PfGW456L13_5019 0.24 +0.4
5,592,797 + PfGW456L13_5019 0.24 +0.3
5,592,887 + PfGW456L13_5019 0.34 +0.4
5,592,957 - PfGW456L13_5019 0.42 -1.3
5,592,998 + PfGW456L13_5019 0.46 -2.9
5,592,998 + PfGW456L13_5019 0.46 +0.8
5,593,114 + PfGW456L13_5019 0.59 +0.5
5,593,114 + PfGW456L13_5019 0.59 -0.1
5,593,114 + PfGW456L13_5019 0.59 +0.5
5,593,115 - PfGW456L13_5019 0.59 +1.4
5,593,252 + PfGW456L13_5019 0.75 +1.2
5,593,252 + PfGW456L13_5019 0.75 +0.6
5,593,253 - PfGW456L13_5019 0.75 +0.4

Or see this region's nucleotide sequence