Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4618

Experiment: Aluminum chloride 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4617 and PfGW456L13_4618 are separated by 105 nucleotidesPfGW456L13_4618 and PfGW456L13_4619 are separated by 165 nucleotidesPfGW456L13_4619 and PfGW456L13_4620 are separated by 5 nucleotides PfGW456L13_4617 - Na+/H+ antiporter NhaA type, at 5,154,402 to 5,155,589 _4617 PfGW456L13_4618 - Outer membrane lipoprotein, at 5,155,695 to 5,156,159 _4618 PfGW456L13_4619 - Ribosomal protein S3, at 5,156,325 to 5,156,561 _4619 PfGW456L13_4620 - Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5), at 5,156,567 to 5,157,214 _4620 Position (kb) 5155 5156 5157Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 5155.600 kb on + strandat 5155.696 kb on + strandat 5156.071 kb on + strand, within PfGW456L13_4618at 5156.071 kb on + strand, within PfGW456L13_4618at 5156.071 kb on + strand, within PfGW456L13_4618at 5156.072 kb on - strand, within PfGW456L13_4618at 5156.072 kb on - strand, within PfGW456L13_4618at 5156.153 kb on + strandat 5156.153 kb on + strandat 5156.153 kb on + strandat 5156.153 kb on + strandat 5156.153 kb on + strandat 5156.153 kb on + strandat 5156.153 kb on + strandat 5156.153 kb on + strandat 5156.153 kb on + strandat 5156.153 kb on + strandat 5156.153 kb on + strandat 5156.154 kb on - strandat 5156.154 kb on - strandat 5156.154 kb on - strandat 5156.154 kb on - strandat 5156.154 kb on - strandat 5156.154 kb on - strandat 5156.154 kb on - strandat 5156.154 kb on - strandat 5156.159 kb on + strandat 5156.159 kb on + strandat 5156.159 kb on + strandat 5156.159 kb on + strandat 5156.159 kb on + strandat 5156.159 kb on + strandat 5156.159 kb on + strandat 5156.160 kb on - strandat 5156.160 kb on - strandat 5156.160 kb on - strandat 5156.190 kb on + strandat 5156.191 kb on - strandat 5156.331 kb on + strandat 5156.331 kb on + strandat 5156.331 kb on + strandat 5156.331 kb on + strandat 5156.331 kb on + strandat 5156.331 kb on + strandat 5156.331 kb on + strandat 5156.331 kb on + strandat 5156.331 kb on + strandat 5156.332 kb on - strandat 5156.332 kb on - strandat 5156.332 kb on - strandat 5156.332 kb on - strandat 5156.332 kb on - strandat 5156.336 kb on + strandat 5156.337 kb on - strandat 5156.367 kb on + strand, within PfGW456L13_4619at 5156.368 kb on - strand, within PfGW456L13_4619at 5156.368 kb on - strand, within PfGW456L13_4619at 5156.386 kb on - strand, within PfGW456L13_4619at 5156.559 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 5 mM
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5,155,600 + +0.5
5,155,696 + +0.1
5,156,071 + PfGW456L13_4618 0.81 -1.5
5,156,071 + PfGW456L13_4618 0.81 -1.4
5,156,071 + PfGW456L13_4618 0.81 -3.9
5,156,072 - PfGW456L13_4618 0.81 -2.6
5,156,072 - PfGW456L13_4618 0.81 -3.0
5,156,153 + -2.4
5,156,153 + -1.5
5,156,153 + -1.6
5,156,153 + +0.4
5,156,153 + -1.5
5,156,153 + -1.7
5,156,153 + -0.9
5,156,153 + -1.4
5,156,153 + -0.8
5,156,153 + -1.9
5,156,153 + -2.6
5,156,154 - -0.5
5,156,154 - -2.2
5,156,154 - -0.3
5,156,154 - +0.2
5,156,154 - -1.0
5,156,154 - -0.0
5,156,154 - -1.9
5,156,154 - -2.0
5,156,159 + -1.1
5,156,159 + -0.3
5,156,159 + -0.2
5,156,159 + -0.8
5,156,159 + +0.4
5,156,159 + -2.1
5,156,159 + -0.8
5,156,160 - -2.0
5,156,160 - -1.5
5,156,160 - -0.7
5,156,190 + -2.5
5,156,191 - -0.8
5,156,331 + -0.2
5,156,331 + -0.8
5,156,331 + +0.7
5,156,331 + -1.6
5,156,331 + -0.8
5,156,331 + -1.9
5,156,331 + -0.8
5,156,331 + -0.9
5,156,331 + -0.7
5,156,332 - +1.3
5,156,332 - +0.5
5,156,332 - +1.3
5,156,332 - +0.4
5,156,332 - +0.5
5,156,336 + -0.0
5,156,337 - +1.5
5,156,367 + PfGW456L13_4619 0.18 -1.7
5,156,368 - PfGW456L13_4619 0.18 +1.9
5,156,368 - PfGW456L13_4619 0.18 -0.9
5,156,386 - PfGW456L13_4619 0.26 +0.4
5,156,559 + -0.4

Or see this region's nucleotide sequence