Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4582

Experiment: Aluminum chloride 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_4581 and PfGW456L13_4582 overlap by 1 nucleotidesPfGW456L13_4582 and PfGW456L13_4583 are separated by 438 nucleotides PfGW456L13_4581 - RND efflux system, inner membrane transporter CmeB, at 5,110,679 to 5,113,840 _4581 PfGW456L13_4582 - RND efflux system, outer membrane lipoprotein CmeC, at 5,113,840 to 5,115,300 _4582 PfGW456L13_4583 - PhaK-like protein, at 5,115,739 to 5,116,998 _4583 Position (kb) 5113 5114 5115 5116Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 5112.866 kb on + strand, within PfGW456L13_4581at 5112.867 kb on - strand, within PfGW456L13_4581at 5112.955 kb on + strand, within PfGW456L13_4581at 5112.955 kb on + strand, within PfGW456L13_4581at 5112.956 kb on - strand, within PfGW456L13_4581at 5112.956 kb on - strand, within PfGW456L13_4581at 5112.959 kb on + strand, within PfGW456L13_4581at 5112.959 kb on + strand, within PfGW456L13_4581at 5112.959 kb on + strand, within PfGW456L13_4581at 5112.959 kb on + strand, within PfGW456L13_4581at 5112.959 kb on + strand, within PfGW456L13_4581at 5112.959 kb on + strand, within PfGW456L13_4581at 5112.959 kb on + strand, within PfGW456L13_4581at 5112.959 kb on + strand, within PfGW456L13_4581at 5112.959 kb on + strand, within PfGW456L13_4581at 5112.959 kb on + strand, within PfGW456L13_4581at 5112.960 kb on - strand, within PfGW456L13_4581at 5112.960 kb on - strand, within PfGW456L13_4581at 5112.960 kb on - strand, within PfGW456L13_4581at 5112.960 kb on - strand, within PfGW456L13_4581at 5112.960 kb on - strand, within PfGW456L13_4581at 5112.960 kb on - strand, within PfGW456L13_4581at 5112.960 kb on - strand, within PfGW456L13_4581at 5112.960 kb on - strand, within PfGW456L13_4581at 5113.001 kb on + strand, within PfGW456L13_4581at 5113.001 kb on + strand, within PfGW456L13_4581at 5113.002 kb on - strand, within PfGW456L13_4581at 5113.056 kb on - strand, within PfGW456L13_4581at 5113.118 kb on + strand, within PfGW456L13_4581at 5113.119 kb on - strand, within PfGW456L13_4581at 5113.142 kb on + strand, within PfGW456L13_4581at 5113.190 kb on + strand, within PfGW456L13_4581at 5113.255 kb on + strand, within PfGW456L13_4581at 5113.255 kb on + strand, within PfGW456L13_4581at 5113.255 kb on + strand, within PfGW456L13_4581at 5113.255 kb on + strand, within PfGW456L13_4581at 5113.255 kb on + strand, within PfGW456L13_4581at 5113.256 kb on - strand, within PfGW456L13_4581at 5113.277 kb on + strand, within PfGW456L13_4581at 5113.316 kb on + strand, within PfGW456L13_4581at 5113.361 kb on + strand, within PfGW456L13_4581at 5113.361 kb on + strand, within PfGW456L13_4581at 5113.361 kb on + strand, within PfGW456L13_4581at 5113.361 kb on + strand, within PfGW456L13_4581at 5113.361 kb on + strand, within PfGW456L13_4581at 5113.361 kb on + strand, within PfGW456L13_4581at 5113.361 kb on + strand, within PfGW456L13_4581at 5113.401 kb on + strand, within PfGW456L13_4581at 5113.401 kb on + strand, within PfGW456L13_4581at 5113.463 kb on + strand, within PfGW456L13_4581at 5113.463 kb on + strand, within PfGW456L13_4581at 5113.463 kb on + strand, within PfGW456L13_4581at 5113.464 kb on - strand, within PfGW456L13_4581at 5113.473 kb on + strand, within PfGW456L13_4581at 5113.473 kb on + strand, within PfGW456L13_4581at 5113.473 kb on + strand, within PfGW456L13_4581at 5113.644 kb on + strandat 5113.714 kb on + strandat 5113.714 kb on + strandat 5113.825 kb on + strandat 5113.880 kb on + strandat 5113.960 kb on + strandat 5114.314 kb on + strand, within PfGW456L13_4582at 5114.380 kb on + strand, within PfGW456L13_4582at 5114.410 kb on + strand, within PfGW456L13_4582at 5114.452 kb on + strand, within PfGW456L13_4582at 5114.452 kb on + strand, within PfGW456L13_4582at 5114.453 kb on - strand, within PfGW456L13_4582at 5114.453 kb on - strand, within PfGW456L13_4582at 5114.554 kb on + strand, within PfGW456L13_4582at 5114.555 kb on - strand, within PfGW456L13_4582at 5114.725 kb on + strand, within PfGW456L13_4582at 5115.022 kb on + strand, within PfGW456L13_4582at 5115.022 kb on + strand, within PfGW456L13_4582at 5115.022 kb on + strand, within PfGW456L13_4582at 5115.022 kb on + strand, within PfGW456L13_4582at 5115.022 kb on + strand, within PfGW456L13_4582at 5115.073 kb on + strand, within PfGW456L13_4582at 5115.073 kb on + strand, within PfGW456L13_4582at 5115.073 kb on + strand, within PfGW456L13_4582at 5115.074 kb on - strand, within PfGW456L13_4582at 5115.214 kb on + strandat 5115.214 kb on + strandat 5115.214 kb on + strandat 5115.214 kb on + strandat 5115.214 kb on + strandat 5115.292 kb on + strandat 5115.293 kb on - strandat 5115.310 kb on - strandat 5115.431 kb on + strandat 5115.432 kb on - strandat 5115.442 kb on + strandat 5115.442 kb on + strandat 5115.442 kb on + strandat 5115.442 kb on + strandat 5115.443 kb on - strandat 5115.443 kb on - strandat 5115.443 kb on - strandat 5115.443 kb on - strandat 5115.443 kb on - strandat 5115.543 kb on - strandat 5115.562 kb on - strandat 5115.596 kb on - strandat 5115.596 kb on - strandat 5115.722 kb on + strandat 5115.723 kb on - strandat 5115.760 kb on + strandat 5115.760 kb on + strandat 5115.760 kb on + strandat 5115.761 kb on - strandat 5115.875 kb on - strand, within PfGW456L13_4583at 5115.878 kb on + strand, within PfGW456L13_4583at 5115.879 kb on - strand, within PfGW456L13_4583at 5115.879 kb on - strand, within PfGW456L13_4583at 5115.879 kb on - strand, within PfGW456L13_4583at 5115.879 kb on - strand, within PfGW456L13_4583at 5115.879 kb on - strand, within PfGW456L13_4583at 5116.009 kb on + strand, within PfGW456L13_4583at 5116.009 kb on + strand, within PfGW456L13_4583at 5116.010 kb on - strand, within PfGW456L13_4583at 5116.010 kb on - strand, within PfGW456L13_4583

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 5 mM
remove
5,112,866 + PfGW456L13_4581 0.69 -0.4
5,112,867 - PfGW456L13_4581 0.69 -2.6
5,112,955 + PfGW456L13_4581 0.72 -2.7
5,112,955 + PfGW456L13_4581 0.72 -1.7
5,112,956 - PfGW456L13_4581 0.72 -1.7
5,112,956 - PfGW456L13_4581 0.72 -1.1
5,112,959 + PfGW456L13_4581 0.72 -1.7
5,112,959 + PfGW456L13_4581 0.72 -2.4
5,112,959 + PfGW456L13_4581 0.72 -0.3
5,112,959 + PfGW456L13_4581 0.72 -0.9
5,112,959 + PfGW456L13_4581 0.72 -3.5
5,112,959 + PfGW456L13_4581 0.72 -2.8
5,112,959 + PfGW456L13_4581 0.72 -2.0
5,112,959 + PfGW456L13_4581 0.72 -2.7
5,112,959 + PfGW456L13_4581 0.72 -0.8
5,112,959 + PfGW456L13_4581 0.72 -3.2
5,112,960 - PfGW456L13_4581 0.72 -2.0
5,112,960 - PfGW456L13_4581 0.72 -3.5
5,112,960 - PfGW456L13_4581 0.72 +0.2
5,112,960 - PfGW456L13_4581 0.72 -0.7
5,112,960 - PfGW456L13_4581 0.72 -2.1
5,112,960 - PfGW456L13_4581 0.72 -0.1
5,112,960 - PfGW456L13_4581 0.72 -0.8
5,112,960 - PfGW456L13_4581 0.72 -2.4
5,113,001 + PfGW456L13_4581 0.73 -4.0
5,113,001 + PfGW456L13_4581 0.73 -4.3
5,113,002 - PfGW456L13_4581 0.73 -2.8
5,113,056 - PfGW456L13_4581 0.75 +1.0
5,113,118 + PfGW456L13_4581 0.77 -0.8
5,113,119 - PfGW456L13_4581 0.77 -1.1
5,113,142 + PfGW456L13_4581 0.78 -2.3
5,113,190 + PfGW456L13_4581 0.79 -3.1
5,113,255 + PfGW456L13_4581 0.81 -3.2
5,113,255 + PfGW456L13_4581 0.81 -2.0
5,113,255 + PfGW456L13_4581 0.81 -2.6
5,113,255 + PfGW456L13_4581 0.81 -1.0
5,113,255 + PfGW456L13_4581 0.81 -3.2
5,113,256 - PfGW456L13_4581 0.81 -1.8
5,113,277 + PfGW456L13_4581 0.82 -1.5
5,113,316 + PfGW456L13_4581 0.83 -0.3
5,113,361 + PfGW456L13_4581 0.85 -2.5
5,113,361 + PfGW456L13_4581 0.85 -2.8
5,113,361 + PfGW456L13_4581 0.85 -2.7
5,113,361 + PfGW456L13_4581 0.85 -0.5
5,113,361 + PfGW456L13_4581 0.85 -2.2
5,113,361 + PfGW456L13_4581 0.85 -1.6
5,113,361 + PfGW456L13_4581 0.85 -2.3
5,113,401 + PfGW456L13_4581 0.86 -4.0
5,113,401 + PfGW456L13_4581 0.86 -1.0
5,113,463 + PfGW456L13_4581 0.88 -2.0
5,113,463 + PfGW456L13_4581 0.88 +0.3
5,113,463 + PfGW456L13_4581 0.88 -1.4
5,113,464 - PfGW456L13_4581 0.88 -1.4
5,113,473 + PfGW456L13_4581 0.88 -1.5
5,113,473 + PfGW456L13_4581 0.88 -2.9
5,113,473 + PfGW456L13_4581 0.88 -0.8
5,113,644 + -0.8
5,113,714 + -2.3
5,113,714 + -1.2
5,113,825 + -3.2
5,113,880 + -0.4
5,113,960 + -2.1
5,114,314 + PfGW456L13_4582 0.32 -1.1
5,114,380 + PfGW456L13_4582 0.37 -2.1
5,114,410 + PfGW456L13_4582 0.39 -0.9
5,114,452 + PfGW456L13_4582 0.42 -1.3
5,114,452 + PfGW456L13_4582 0.42 -1.4
5,114,453 - PfGW456L13_4582 0.42 -2.4
5,114,453 - PfGW456L13_4582 0.42 +0.2
5,114,554 + PfGW456L13_4582 0.49 -2.5
5,114,555 - PfGW456L13_4582 0.49 -1.3
5,114,725 + PfGW456L13_4582 0.61 +0.2
5,115,022 + PfGW456L13_4582 0.81 -0.9
5,115,022 + PfGW456L13_4582 0.81 -3.0
5,115,022 + PfGW456L13_4582 0.81 -3.2
5,115,022 + PfGW456L13_4582 0.81 -0.4
5,115,022 + PfGW456L13_4582 0.81 -1.4
5,115,073 + PfGW456L13_4582 0.84 -1.6
5,115,073 + PfGW456L13_4582 0.84 -1.8
5,115,073 + PfGW456L13_4582 0.84 -2.5
5,115,074 - PfGW456L13_4582 0.84 -0.8
5,115,214 + -1.0
5,115,214 + -1.5
5,115,214 + -2.6
5,115,214 + -1.6
5,115,214 + -2.5
5,115,292 + -1.1
5,115,293 - +1.9
5,115,310 - +2.0
5,115,431 + +0.3
5,115,432 - -2.4
5,115,442 + -0.0
5,115,442 + +0.2
5,115,442 + +0.9
5,115,442 + -2.3
5,115,443 - -0.4
5,115,443 - +0.1
5,115,443 - -0.6
5,115,443 - -0.2
5,115,443 - -0.4
5,115,543 - -0.1
5,115,562 - -1.0
5,115,596 - +0.6
5,115,596 - -0.3
5,115,722 + +0.6
5,115,723 - -0.9
5,115,760 + -1.1
5,115,760 + -1.5
5,115,760 + -0.2
5,115,761 - -0.4
5,115,875 - PfGW456L13_4583 0.11 +0.7
5,115,878 + PfGW456L13_4583 0.11 +0.5
5,115,879 - PfGW456L13_4583 0.11 -2.9
5,115,879 - PfGW456L13_4583 0.11 +0.6
5,115,879 - PfGW456L13_4583 0.11 -1.0
5,115,879 - PfGW456L13_4583 0.11 -1.7
5,115,879 - PfGW456L13_4583 0.11 +0.7
5,116,009 + PfGW456L13_4583 0.21 +0.2
5,116,009 + PfGW456L13_4583 0.21 -2.6
5,116,010 - PfGW456L13_4583 0.22 +0.0
5,116,010 - PfGW456L13_4583 0.22 +0.7

Or see this region's nucleotide sequence