Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4134

Experiment: Aluminum chloride 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4132 and PfGW456L13_4133 are separated by 16 nucleotidesPfGW456L13_4133 and PfGW456L13_4134 are separated by 113 nucleotidesPfGW456L13_4134 and PfGW456L13_4135 are separated by 365 nucleotidesPfGW456L13_4135 and PfGW456L13_4136 are separated by 146 nucleotides PfGW456L13_4132 - hypothetical protein, at 4,651,968 to 4,652,150 _4132 PfGW456L13_4133 - hypothetical protein, at 4,652,167 to 4,652,634 _4133 PfGW456L13_4134 - hypothetical protein, at 4,652,748 to 4,653,062 _4134 PfGW456L13_4135 - hypothetical protein, at 4,653,428 to 4,653,616 _4135 PfGW456L13_4136 - PlcB, ORFX, ORFP, ORFB, ORFA, ldh gene, at 4,653,763 to 4,654,083 _4136 Position (kb) 4652 4653 4654Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4651.815 kb on - strandat 4651.854 kb on + strandat 4651.855 kb on - strandat 4651.855 kb on - strandat 4651.855 kb on - strandat 4651.855 kb on - strandat 4651.860 kb on + strandat 4651.860 kb on + strandat 4652.094 kb on + strand, within PfGW456L13_4132at 4652.095 kb on - strand, within PfGW456L13_4132at 4652.096 kb on + strand, within PfGW456L13_4132at 4652.096 kb on + strand, within PfGW456L13_4132at 4652.096 kb on + strand, within PfGW456L13_4132at 4652.096 kb on + strand, within PfGW456L13_4132at 4652.096 kb on + strand, within PfGW456L13_4132at 4652.096 kb on + strandat 4652.096 kb on + strand, within PfGW456L13_4132at 4652.096 kb on + strand, within PfGW456L13_4132at 4652.096 kb on + strand, within PfGW456L13_4132at 4652.096 kb on + strand, within PfGW456L13_4132at 4652.096 kb on + strand, within PfGW456L13_4132at 4652.096 kb on + strand, within PfGW456L13_4132at 4652.096 kb on + strand, within PfGW456L13_4132at 4652.096 kb on + strand, within PfGW456L13_4132at 4652.097 kb on - strand, within PfGW456L13_4132at 4652.097 kb on - strand, within PfGW456L13_4132at 4652.097 kb on - strand, within PfGW456L13_4132at 4652.097 kb on - strand, within PfGW456L13_4132at 4652.097 kb on - strand, within PfGW456L13_4132at 4652.097 kb on - strand, within PfGW456L13_4132at 4652.097 kb on - strand, within PfGW456L13_4132at 4652.097 kb on - strand, within PfGW456L13_4132at 4652.097 kb on - strand, within PfGW456L13_4132at 4652.168 kb on + strandat 4652.168 kb on + strandat 4652.168 kb on + strandat 4652.168 kb on + strandat 4652.168 kb on + strandat 4652.169 kb on - strandat 4652.169 kb on - strandat 4652.169 kb on - strandat 4652.169 kb on - strandat 4652.169 kb on - strandat 4652.169 kb on - strandat 4652.178 kb on + strandat 4652.178 kb on + strandat 4652.178 kb on + strandat 4652.178 kb on + strandat 4652.178 kb on + strandat 4652.178 kb on + strandat 4652.179 kb on - strandat 4652.202 kb on + strandat 4652.202 kb on + strandat 4652.202 kb on + strandat 4652.203 kb on - strandat 4652.523 kb on + strand, within PfGW456L13_4133at 4652.523 kb on + strand, within PfGW456L13_4133at 4652.523 kb on + strand, within PfGW456L13_4133at 4652.584 kb on + strand, within PfGW456L13_4133at 4652.585 kb on - strand, within PfGW456L13_4133at 4652.659 kb on + strandat 4652.696 kb on + strandat 4652.849 kb on + strand, within PfGW456L13_4134at 4653.233 kb on - strandat 4653.247 kb on - strandat 4653.403 kb on - strandat 4653.414 kb on + strandat 4653.415 kb on - strandat 4653.459 kb on - strand, within PfGW456L13_4135at 4653.540 kb on + strand, within PfGW456L13_4135at 4653.540 kb on + strand, within PfGW456L13_4135at 4653.540 kb on + strand, within PfGW456L13_4135at 4653.541 kb on - strand, within PfGW456L13_4135at 4653.541 kb on - strand, within PfGW456L13_4135at 4653.603 kb on + strandat 4653.603 kb on + strandat 4653.603 kb on + strandat 4653.604 kb on - strandat 4653.604 kb on - strandat 4653.604 kb on - strandat 4653.604 kb on - strandat 4653.604 kb on - strandat 4653.604 kb on - strandat 4653.604 kb on - strandat 4653.604 kb on - strandat 4653.699 kb on + strandat 4653.765 kb on - strandat 4653.839 kb on + strand, within PfGW456L13_4136at 4653.839 kb on + strand, within PfGW456L13_4136at 4653.839 kb on + strand, within PfGW456L13_4136at 4654.034 kb on + strand, within PfGW456L13_4136at 4654.042 kb on - strand, within PfGW456L13_4136at 4654.042 kb on - strand, within PfGW456L13_4136

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 5 mM
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4,651,815 - -0.4
4,651,854 + -0.8
4,651,855 - -0.4
4,651,855 - +0.8
4,651,855 - +1.1
4,651,855 - -0.4
4,651,860 + -0.0
4,651,860 + +0.3
4,652,094 + PfGW456L13_4132 0.69 +0.3
4,652,095 - PfGW456L13_4132 0.69 +0.4
4,652,096 + PfGW456L13_4132 0.70 -0.1
4,652,096 + PfGW456L13_4132 0.70 +0.6
4,652,096 + PfGW456L13_4132 0.70 +0.1
4,652,096 + PfGW456L13_4132 0.70 +0.5
4,652,096 + PfGW456L13_4132 0.70 +0.3
4,652,096 + -0.6
4,652,096 + PfGW456L13_4132 0.70 +0.1
4,652,096 + PfGW456L13_4132 0.70 +2.0
4,652,096 + PfGW456L13_4132 0.70 +2.0
4,652,096 + PfGW456L13_4132 0.70 +0.1
4,652,096 + PfGW456L13_4132 0.70 -0.6
4,652,096 + PfGW456L13_4132 0.70 -0.7
4,652,096 + PfGW456L13_4132 0.70 +0.6
4,652,096 + PfGW456L13_4132 0.70 +1.0
4,652,097 - PfGW456L13_4132 0.70 +0.5
4,652,097 - PfGW456L13_4132 0.70 +0.4
4,652,097 - PfGW456L13_4132 0.70 +0.3
4,652,097 - PfGW456L13_4132 0.70 -0.4
4,652,097 - PfGW456L13_4132 0.70 -0.1
4,652,097 - PfGW456L13_4132 0.70 -0.1
4,652,097 - PfGW456L13_4132 0.70 -0.3
4,652,097 - PfGW456L13_4132 0.70 +1.1
4,652,097 - PfGW456L13_4132 0.70 -0.2
4,652,168 + +1.4
4,652,168 + -0.1
4,652,168 + +1.3
4,652,168 + +0.3
4,652,168 + +0.9
4,652,169 - -2.5
4,652,169 - +0.5
4,652,169 - +1.7
4,652,169 - -0.4
4,652,169 - +0.0
4,652,169 - -0.5
4,652,178 + +0.9
4,652,178 + +0.7
4,652,178 + -1.1
4,652,178 + -0.7
4,652,178 + -0.5
4,652,178 + -0.3
4,652,179 - -2.1
4,652,202 + -0.3
4,652,202 + +1.2
4,652,202 + +0.3
4,652,203 - +1.4
4,652,523 + PfGW456L13_4133 0.76 -0.4
4,652,523 + PfGW456L13_4133 0.76 -0.1
4,652,523 + PfGW456L13_4133 0.76 +0.9
4,652,584 + PfGW456L13_4133 0.89 -0.0
4,652,585 - PfGW456L13_4133 0.89 +0.3
4,652,659 + +0.4
4,652,696 + -0.6
4,652,849 + PfGW456L13_4134 0.32 -1.1
4,653,233 - +0.4
4,653,247 - -0.1
4,653,403 - +1.0
4,653,414 + -0.6
4,653,415 - -0.0
4,653,459 - PfGW456L13_4135 0.16 +2.3
4,653,540 + PfGW456L13_4135 0.59 +0.7
4,653,540 + PfGW456L13_4135 0.59 +0.7
4,653,540 + PfGW456L13_4135 0.59 -0.4
4,653,541 - PfGW456L13_4135 0.60 -2.9
4,653,541 - PfGW456L13_4135 0.60 -1.1
4,653,603 + -0.0
4,653,603 + +0.4
4,653,603 + +1.1
4,653,604 - +1.4
4,653,604 - -0.5
4,653,604 - -0.2
4,653,604 - -1.2
4,653,604 - -0.3
4,653,604 - +0.8
4,653,604 - +1.7
4,653,604 - -1.2
4,653,699 + +0.7
4,653,765 - +1.1
4,653,839 + PfGW456L13_4136 0.24 +1.3
4,653,839 + PfGW456L13_4136 0.24 +1.7
4,653,839 + PfGW456L13_4136 0.24 +0.2
4,654,034 + PfGW456L13_4136 0.84 -0.7
4,654,042 - PfGW456L13_4136 0.87 -0.4
4,654,042 - PfGW456L13_4136 0.87 +0.3

Or see this region's nucleotide sequence