Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4041

Experiment: Aluminum chloride 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_4040 and PfGW456L13_4041 are separated by 29 nucleotidesPfGW456L13_4041 and PfGW456L13_4042 are separated by 619 nucleotides PfGW456L13_4040 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 4,532,353 to 4,533,528 _4040 PfGW456L13_4041 - Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3), at 4,533,558 to 4,535,705 _4041 PfGW456L13_4042 - FIG00953628: hypothetical protein, at 4,536,325 to 4,536,744 _4042 Position (kb) 4533 4534 4535 4536Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4532.901 kb on - strand, within PfGW456L13_4040at 4532.934 kb on - strand, within PfGW456L13_4040at 4533.102 kb on - strand, within PfGW456L13_4040at 4533.156 kb on + strand, within PfGW456L13_4040at 4533.157 kb on - strand, within PfGW456L13_4040at 4533.513 kb on + strandat 4533.514 kb on - strandat 4533.514 kb on - strandat 4533.528 kb on + strandat 4533.529 kb on - strandat 4533.529 kb on - strandat 4533.529 kb on - strandat 4533.529 kb on - strandat 4533.529 kb on - strandat 4533.545 kb on + strandat 4533.546 kb on - strandat 4533.546 kb on - strandat 4533.546 kb on - strandat 4533.617 kb on - strandat 4533.617 kb on - strandat 4533.638 kb on - strandat 4533.686 kb on - strandat 4533.938 kb on - strandat 4534.042 kb on - strand, within PfGW456L13_4041at 4534.265 kb on - strand, within PfGW456L13_4041at 4534.786 kb on + strand, within PfGW456L13_4041at 4534.786 kb on + strand, within PfGW456L13_4041at 4535.270 kb on - strand, within PfGW456L13_4041at 4535.270 kb on - strand, within PfGW456L13_4041at 4535.574 kb on + strandat 4535.691 kb on - strandat 4535.698 kb on + strandat 4535.699 kb on - strandat 4535.739 kb on - strandat 4535.739 kb on - strandat 4535.739 kb on - strandat 4535.790 kb on - strandat 4535.790 kb on - strandat 4535.854 kb on - strandat 4535.870 kb on + strandat 4535.871 kb on - strandat 4535.871 kb on - strandat 4535.962 kb on + strandat 4535.982 kb on + strandat 4535.983 kb on - strandat 4536.012 kb on + strandat 4536.012 kb on + strandat 4536.013 kb on - strandat 4536.060 kb on + strandat 4536.068 kb on + strandat 4536.068 kb on + strandat 4536.069 kb on - strandat 4536.069 kb on - strandat 4536.069 kb on - strandat 4536.069 kb on - strandat 4536.069 kb on - strandat 4536.069 kb on - strandat 4536.122 kb on + strandat 4536.122 kb on + strandat 4536.122 kb on + strandat 4536.122 kb on + strandat 4536.123 kb on - strandat 4536.123 kb on - strandat 4536.123 kb on - strandat 4536.123 kb on - strandat 4536.194 kb on - strandat 4536.194 kb on - strandat 4536.215 kb on + strandat 4536.392 kb on + strand, within PfGW456L13_4042at 4536.393 kb on - strand, within PfGW456L13_4042at 4536.393 kb on - strand, within PfGW456L13_4042at 4536.429 kb on - strand, within PfGW456L13_4042at 4536.499 kb on - strand, within PfGW456L13_4042at 4536.527 kb on + strand, within PfGW456L13_4042at 4536.528 kb on - strand, within PfGW456L13_4042

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 5 mM
remove
4,532,901 - PfGW456L13_4040 0.47 -0.2
4,532,934 - PfGW456L13_4040 0.49 +0.6
4,533,102 - PfGW456L13_4040 0.64 +0.6
4,533,156 + PfGW456L13_4040 0.68 -1.0
4,533,157 - PfGW456L13_4040 0.68 +1.1
4,533,513 + -2.4
4,533,514 - +1.4
4,533,514 - -0.6
4,533,528 + +0.5
4,533,529 - -1.0
4,533,529 - +0.3
4,533,529 - -1.2
4,533,529 - -0.6
4,533,529 - -0.7
4,533,545 + -1.8
4,533,546 - -2.6
4,533,546 - +1.9
4,533,546 - -0.7
4,533,617 - +0.6
4,533,617 - -0.3
4,533,638 - +1.0
4,533,686 - -0.0
4,533,938 - -0.0
4,534,042 - PfGW456L13_4041 0.23 +0.3
4,534,265 - PfGW456L13_4041 0.33 -1.8
4,534,786 + PfGW456L13_4041 0.57 -1.2
4,534,786 + PfGW456L13_4041 0.57 -1.0
4,535,270 - PfGW456L13_4041 0.80 -1.8
4,535,270 - PfGW456L13_4041 0.80 -0.6
4,535,574 + +0.3
4,535,691 - -0.8
4,535,698 + +0.4
4,535,699 - +0.7
4,535,739 - +0.2
4,535,739 - -0.6
4,535,739 - -1.7
4,535,790 - -0.2
4,535,790 - +0.4
4,535,854 - +1.3
4,535,870 + -0.8
4,535,871 - -0.3
4,535,871 - -0.4
4,535,962 + -2.1
4,535,982 + +1.8
4,535,983 - +1.0
4,536,012 + -0.3
4,536,012 + -1.2
4,536,013 - -0.4
4,536,060 + -2.0
4,536,068 + +0.3
4,536,068 + +0.1
4,536,069 - -0.4
4,536,069 - -0.2
4,536,069 - +0.9
4,536,069 - +0.5
4,536,069 - -1.0
4,536,069 - -0.4
4,536,122 + +0.7
4,536,122 + +1.0
4,536,122 + -3.1
4,536,122 + +0.5
4,536,123 - +1.6
4,536,123 - -0.5
4,536,123 - -0.2
4,536,123 - +0.9
4,536,194 - +0.1
4,536,194 - -0.0
4,536,215 + +0.4
4,536,392 + PfGW456L13_4042 0.16 +1.8
4,536,393 - PfGW456L13_4042 0.16 +0.9
4,536,393 - PfGW456L13_4042 0.16 -0.6
4,536,429 - PfGW456L13_4042 0.25 +0.0
4,536,499 - PfGW456L13_4042 0.41 -2.0
4,536,527 + PfGW456L13_4042 0.48 +1.0
4,536,528 - PfGW456L13_4042 0.48 +0.2

Or see this region's nucleotide sequence