Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_350

Experiment: Aluminum chloride 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_348 and PfGW456L13_349 overlap by 2 nucleotidesPfGW456L13_349 and PfGW456L13_350 are separated by 116 nucleotidesPfGW456L13_350 and PfGW456L13_351 are separated by 56 nucleotidesPfGW456L13_351 and PfGW456L13_352 are separated by 1 nucleotidesPfGW456L13_352 and PfGW456L13_353 are separated by 153 nucleotides PfGW456L13_348 - FIG00955429: hypothetical protein, at 410,052 to 410,492 _348 PfGW456L13_349 - tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207), at 410,491 to 410,946 _349 PfGW456L13_350 - Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state), at 411,063 to 411,548 _350 PfGW456L13_351 - Glutaredoxin 3 (Grx3), at 411,605 to 411,859 _351 PfGW456L13_352 - FIG136845: Rhodanese-related sulfurtransferase, at 411,861 to 412,274 _352 PfGW456L13_353 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1), at 412,428 to 413,957 _353 Position (kb) 411 412Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 410.427 kb on + strand, within PfGW456L13_348at 410.427 kb on + strand, within PfGW456L13_348at 410.428 kb on - strand, within PfGW456L13_348at 410.428 kb on - strand, within PfGW456L13_348at 410.428 kb on - strand, within PfGW456L13_348at 410.456 kb on + strandat 410.456 kb on + strandat 410.457 kb on - strandat 410.641 kb on + strand, within PfGW456L13_349at 410.642 kb on - strand, within PfGW456L13_349at 410.650 kb on + strand, within PfGW456L13_349at 410.650 kb on + strand, within PfGW456L13_349at 410.650 kb on + strand, within PfGW456L13_349at 410.650 kb on + strand, within PfGW456L13_349at 410.650 kb on + strand, within PfGW456L13_349at 410.650 kb on + strand, within PfGW456L13_349at 410.651 kb on - strand, within PfGW456L13_349at 410.651 kb on - strand, within PfGW456L13_349at 410.896 kb on - strand, within PfGW456L13_349at 410.915 kb on - strandat 410.940 kb on - strandat 410.944 kb on + strandat 410.944 kb on + strandat 410.945 kb on - strandat 410.945 kb on - strandat 410.945 kb on - strandat 411.050 kb on + strandat 411.050 kb on + strandat 411.050 kb on + strandat 411.050 kb on + strandat 411.050 kb on + strandat 411.051 kb on - strandat 411.051 kb on - strandat 411.051 kb on - strandat 411.051 kb on - strandat 411.056 kb on + strandat 411.057 kb on - strandat 411.064 kb on + strandat 411.118 kb on + strand, within PfGW456L13_350at 411.119 kb on - strand, within PfGW456L13_350at 411.119 kb on - strand, within PfGW456L13_350at 411.202 kb on + strand, within PfGW456L13_350at 411.202 kb on + strand, within PfGW456L13_350at 411.478 kb on + strand, within PfGW456L13_350at 411.478 kb on + strand, within PfGW456L13_350at 411.478 kb on + strand, within PfGW456L13_350at 411.478 kb on + strand, within PfGW456L13_350at 411.478 kb on + strand, within PfGW456L13_350at 411.478 kb on + strand, within PfGW456L13_350at 411.479 kb on - strand, within PfGW456L13_350at 411.479 kb on - strand, within PfGW456L13_350at 411.479 kb on - strand, within PfGW456L13_350at 411.479 kb on - strand, within PfGW456L13_350at 411.479 kb on - strand, within PfGW456L13_350at 411.479 kb on - strand, within PfGW456L13_350at 411.479 kb on - strand, within PfGW456L13_350at 411.578 kb on + strandat 411.578 kb on + strandat 411.579 kb on - strandat 411.579 kb on - strandat 411.598 kb on - strandat 411.801 kb on + strand, within PfGW456L13_351at 411.801 kb on + strand, within PfGW456L13_351at 411.801 kb on + strand, within PfGW456L13_351at 411.801 kb on + strand, within PfGW456L13_351at 411.802 kb on - strand, within PfGW456L13_351at 411.802 kb on - strand, within PfGW456L13_351at 411.802 kb on - strand, within PfGW456L13_351at 411.802 kb on - strand, within PfGW456L13_351at 411.820 kb on - strand, within PfGW456L13_351at 411.840 kb on + strandat 411.840 kb on + strandat 411.840 kb on + strandat 411.841 kb on - strandat 411.859 kb on + strandat 411.859 kb on + strandat 411.859 kb on + strandat 411.860 kb on - strandat 411.860 kb on - strandat 411.860 kb on - strandat 411.860 kb on - strandat 411.860 kb on - strandat 411.902 kb on + strandat 412.026 kb on + strand, within PfGW456L13_352at 412.027 kb on - strand, within PfGW456L13_352at 412.027 kb on - strand, within PfGW456L13_352at 412.116 kb on + strand, within PfGW456L13_352at 412.117 kb on - strand, within PfGW456L13_352at 412.117 kb on - strand, within PfGW456L13_352at 412.117 kb on - strand, within PfGW456L13_352at 412.117 kb on - strand, within PfGW456L13_352at 412.167 kb on - strand, within PfGW456L13_352at 412.223 kb on + strand, within PfGW456L13_352at 412.237 kb on + strandat 412.238 kb on - strandat 412.238 kb on - strandat 412.266 kb on - strandat 412.311 kb on - strandat 412.312 kb on + strandat 412.312 kb on + strandat 412.312 kb on + strandat 412.312 kb on + strandat 412.312 kb on + strandat 412.312 kb on + strandat 412.313 kb on - strandat 412.313 kb on - strandat 412.313 kb on - strandat 412.313 kb on - strandat 412.313 kb on - strandat 412.313 kb on - strandat 412.313 kb on - strandat 412.313 kb on - strandat 412.313 kb on - strandat 412.313 kb on - strandat 412.313 kb on - strandat 412.323 kb on + strandat 412.324 kb on - strandat 412.324 kb on - strandat 412.324 kb on - strandat 412.372 kb on + strandat 412.405 kb on + strandat 412.433 kb on + strandat 412.433 kb on + strandat 412.528 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 5 mM
remove
410,427 + PfGW456L13_348 0.85 +2.4
410,427 + PfGW456L13_348 0.85 +0.9
410,428 - PfGW456L13_348 0.85 -1.0
410,428 - PfGW456L13_348 0.85 -0.1
410,428 - PfGW456L13_348 0.85 +0.1
410,456 + +0.5
410,456 + +1.1
410,457 - -1.4
410,641 + PfGW456L13_349 0.33 +0.7
410,642 - PfGW456L13_349 0.33 -0.5
410,650 + PfGW456L13_349 0.35 -2.0
410,650 + PfGW456L13_349 0.35 +1.7
410,650 + PfGW456L13_349 0.35 -1.3
410,650 + PfGW456L13_349 0.35 +1.6
410,650 + PfGW456L13_349 0.35 +0.6
410,650 + PfGW456L13_349 0.35 +1.2
410,651 - PfGW456L13_349 0.35 +0.2
410,651 - PfGW456L13_349 0.35 +0.2
410,896 - PfGW456L13_349 0.89 +1.0
410,915 - +0.9
410,940 - -0.5
410,944 + +1.5
410,944 + +1.7
410,945 - -0.1
410,945 - +0.0
410,945 - -1.5
411,050 + +0.5
411,050 + +0.4
411,050 + -1.3
411,050 + +0.8
411,050 + +1.1
411,051 - +0.2
411,051 - -1.3
411,051 - -0.6
411,051 - -0.1
411,056 + +1.2
411,057 - -0.5
411,064 + +0.5
411,118 + PfGW456L13_350 0.11 +1.2
411,119 - PfGW456L13_350 0.12 +1.6
411,119 - PfGW456L13_350 0.12 +0.1
411,202 + PfGW456L13_350 0.29 -1.7
411,202 + PfGW456L13_350 0.29 +0.1
411,478 + PfGW456L13_350 0.85 -1.1
411,478 + PfGW456L13_350 0.85 -1.3
411,478 + PfGW456L13_350 0.85 -1.1
411,478 + PfGW456L13_350 0.85 -0.5
411,478 + PfGW456L13_350 0.85 -2.1
411,478 + PfGW456L13_350 0.85 -1.5
411,479 - PfGW456L13_350 0.86 -2.4
411,479 - PfGW456L13_350 0.86 -2.8
411,479 - PfGW456L13_350 0.86 -1.6
411,479 - PfGW456L13_350 0.86 -1.2
411,479 - PfGW456L13_350 0.86 -0.5
411,479 - PfGW456L13_350 0.86 -3.5
411,479 - PfGW456L13_350 0.86 -2.9
411,578 + -2.7
411,578 + -2.8
411,579 - +0.3
411,579 - +0.8
411,598 - -2.7
411,801 + PfGW456L13_351 0.77 +0.4
411,801 + PfGW456L13_351 0.77 -1.4
411,801 + PfGW456L13_351 0.77 -2.2
411,801 + PfGW456L13_351 0.77 +0.4
411,802 - PfGW456L13_351 0.77 +0.7
411,802 - PfGW456L13_351 0.77 +1.5
411,802 - PfGW456L13_351 0.77 -0.7
411,802 - PfGW456L13_351 0.77 -0.1
411,820 - PfGW456L13_351 0.84 +0.2
411,840 + +1.0
411,840 + +0.1
411,840 + -1.7
411,841 - -0.2
411,859 + -2.8
411,859 + +1.5
411,859 + +0.5
411,860 - -1.0
411,860 - -0.3
411,860 - +1.0
411,860 - +0.0
411,860 - -0.2
411,902 + -0.1
412,026 + PfGW456L13_352 0.40 -1.7
412,027 - PfGW456L13_352 0.40 +0.2
412,027 - PfGW456L13_352 0.40 +0.1
412,116 + PfGW456L13_352 0.62 -3.3
412,117 - PfGW456L13_352 0.62 -0.3
412,117 - PfGW456L13_352 0.62 -0.5
412,117 - PfGW456L13_352 0.62 -2.5
412,117 - PfGW456L13_352 0.62 +0.2
412,167 - PfGW456L13_352 0.74 +0.6
412,223 + PfGW456L13_352 0.87 -1.8
412,237 + -2.7
412,238 - +1.3
412,238 - -0.5
412,266 - -0.0
412,311 - +0.0
412,312 + +2.0
412,312 + -0.8
412,312 + +0.6
412,312 + +1.8
412,312 + +2.3
412,312 + +0.8
412,313 - -2.0
412,313 - +1.5
412,313 - +0.2
412,313 - -0.4
412,313 - -0.9
412,313 - -0.4
412,313 - -0.4
412,313 - -1.3
412,313 - -1.1
412,313 - +0.8
412,313 - -2.2
412,323 + +1.0
412,324 - -1.8
412,324 - +0.6
412,324 - -1.7
412,372 + +1.0
412,405 + -0.0
412,433 + +1.5
412,433 + -1.4
412,528 + -1.3

Or see this region's nucleotide sequence