Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_204

Experiment: Aluminum chloride 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_203 and PfGW456L13_204 overlap by 17 nucleotidesPfGW456L13_204 and PfGW456L13_205 overlap by 42 nucleotidesPfGW456L13_205 and PfGW456L13_206 are separated by 607 nucleotides PfGW456L13_203 - Glycosyl transferase in large core OS assembly cluster, at 232,489 to 233,619 _203 PfGW456L13_204 - Carbamoyltransferase in large core OS assembly cluster, at 233,603 to 235,360 _204 PfGW456L13_205 - hypothetical protein, at 235,319 to 235,483 _205 PfGW456L13_206 - serine/threonine protein kinase, at 236,091 to 237,542 _206 Position (kb) 233 234 235 236Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 232.620 kb on + strand, within PfGW456L13_203at 232.735 kb on + strand, within PfGW456L13_203at 232.802 kb on - strand, within PfGW456L13_203at 232.802 kb on - strand, within PfGW456L13_203at 232.802 kb on - strand, within PfGW456L13_203at 232.802 kb on - strand, within PfGW456L13_203at 232.802 kb on - strand, within PfGW456L13_203at 232.802 kb on - strand, within PfGW456L13_203at 232.802 kb on - strand, within PfGW456L13_203at 232.802 kb on - strand, within PfGW456L13_203at 232.802 kb on - strand, within PfGW456L13_203at 232.820 kb on + strand, within PfGW456L13_203at 232.820 kb on + strand, within PfGW456L13_203at 232.820 kb on + strand, within PfGW456L13_203at 232.821 kb on - strand, within PfGW456L13_203at 232.821 kb on - strand, within PfGW456L13_203at 232.821 kb on - strand, within PfGW456L13_203at 232.824 kb on + strand, within PfGW456L13_203at 232.824 kb on + strand, within PfGW456L13_203at 232.987 kb on - strand, within PfGW456L13_203at 233.121 kb on - strand, within PfGW456L13_203at 233.121 kb on - strand, within PfGW456L13_203at 233.121 kb on - strand, within PfGW456L13_203at 233.223 kb on + strand, within PfGW456L13_203at 233.255 kb on + strand, within PfGW456L13_203at 233.256 kb on - strand, within PfGW456L13_203at 233.256 kb on - strand, within PfGW456L13_203at 233.315 kb on + strand, within PfGW456L13_203at 233.315 kb on + strand, within PfGW456L13_203at 233.315 kb on + strand, within PfGW456L13_203at 233.315 kb on + strand, within PfGW456L13_203at 233.315 kb on + strand, within PfGW456L13_203at 233.316 kb on - strand, within PfGW456L13_203at 233.316 kb on - strand, within PfGW456L13_203at 233.316 kb on - strand, within PfGW456L13_203at 233.427 kb on - strand, within PfGW456L13_203at 233.427 kb on - strand, within PfGW456L13_203at 233.427 kb on - strand, within PfGW456L13_203at 233.540 kb on + strandat 233.668 kb on - strandat 233.692 kb on + strandat 233.692 kb on + strandat 233.692 kb on + strandat 233.692 kb on + strandat 233.693 kb on - strandat 233.693 kb on - strandat 233.693 kb on - strandat 233.693 kb on - strandat 233.803 kb on - strand, within PfGW456L13_204at 233.803 kb on - strand, within PfGW456L13_204at 233.806 kb on - strand, within PfGW456L13_204at 233.815 kb on + strand, within PfGW456L13_204at 233.816 kb on - strand, within PfGW456L13_204at 233.816 kb on - strand, within PfGW456L13_204at 233.816 kb on - strand, within PfGW456L13_204at 233.816 kb on - strand, within PfGW456L13_204at 233.816 kb on - strand, within PfGW456L13_204at 233.817 kb on + strand, within PfGW456L13_204at 233.818 kb on - strand, within PfGW456L13_204at 233.818 kb on - strand, within PfGW456L13_204at 233.818 kb on - strand, within PfGW456L13_204at 233.818 kb on - strand, within PfGW456L13_204at 233.818 kb on - strand, within PfGW456L13_204at 234.247 kb on - strand, within PfGW456L13_204at 234.294 kb on + strand, within PfGW456L13_204at 234.294 kb on + strand, within PfGW456L13_204at 234.294 kb on + strand, within PfGW456L13_204at 234.294 kb on + strand, within PfGW456L13_204at 234.295 kb on - strand, within PfGW456L13_204at 234.295 kb on - strand, within PfGW456L13_204at 234.295 kb on - strand, within PfGW456L13_204at 234.295 kb on - strand, within PfGW456L13_204at 234.295 kb on - strand, within PfGW456L13_204at 234.295 kb on - strand, within PfGW456L13_204at 234.295 kb on - strand, within PfGW456L13_204at 234.295 kb on - strand, within PfGW456L13_204at 234.295 kb on - strand, within PfGW456L13_204at 234.418 kb on - strand, within PfGW456L13_204at 234.418 kb on - strand, within PfGW456L13_204at 234.457 kb on - strand, within PfGW456L13_204at 234.457 kb on - strand, within PfGW456L13_204at 234.457 kb on - strand, within PfGW456L13_204at 234.457 kb on - strand, within PfGW456L13_204at 234.514 kb on - strand, within PfGW456L13_204at 234.522 kb on + strand, within PfGW456L13_204at 234.522 kb on + strand, within PfGW456L13_204at 234.522 kb on + strand, within PfGW456L13_204at 234.522 kb on + strand, within PfGW456L13_204at 234.522 kb on + strand, within PfGW456L13_204at 234.522 kb on + strand, within PfGW456L13_204at 234.523 kb on - strand, within PfGW456L13_204at 234.523 kb on - strand, within PfGW456L13_204at 234.523 kb on - strand, within PfGW456L13_204at 234.523 kb on - strand, within PfGW456L13_204at 234.523 kb on - strand, within PfGW456L13_204at 234.523 kb on - strand, within PfGW456L13_204at 234.523 kb on - strand, within PfGW456L13_204at 234.523 kb on - strand, within PfGW456L13_204at 234.523 kb on - strand, within PfGW456L13_204at 234.523 kb on - strand, within PfGW456L13_204at 234.523 kb on - strand, within PfGW456L13_204at 234.523 kb on - strand, within PfGW456L13_204at 234.588 kb on + strand, within PfGW456L13_204at 234.588 kb on + strand, within PfGW456L13_204at 234.588 kb on + strand, within PfGW456L13_204at 234.589 kb on - strand, within PfGW456L13_204at 234.589 kb on - strand, within PfGW456L13_204at 234.589 kb on - strand, within PfGW456L13_204at 234.589 kb on - strand, within PfGW456L13_204at 234.589 kb on - strand, within PfGW456L13_204at 234.589 kb on - strand, within PfGW456L13_204at 234.589 kb on - strand, within PfGW456L13_204at 234.589 kb on - strand, within PfGW456L13_204at 234.589 kb on - strand, within PfGW456L13_204at 234.589 kb on - strand, within PfGW456L13_204at 234.589 kb on - strand, within PfGW456L13_204at 234.591 kb on + strand, within PfGW456L13_204at 234.591 kb on + strand, within PfGW456L13_204at 234.591 kb on + strand, within PfGW456L13_204at 234.592 kb on - strand, within PfGW456L13_204at 234.592 kb on - strand, within PfGW456L13_204at 234.697 kb on - strand, within PfGW456L13_204at 234.787 kb on - strand, within PfGW456L13_204at 234.787 kb on - strand, within PfGW456L13_204at 234.787 kb on - strand, within PfGW456L13_204at 234.934 kb on - strand, within PfGW456L13_204at 235.045 kb on - strand, within PfGW456L13_204at 235.045 kb on - strand, within PfGW456L13_204at 235.093 kb on - strand, within PfGW456L13_204at 235.111 kb on - strand, within PfGW456L13_204at 235.221 kb on + strandat 235.221 kb on + strandat 235.247 kb on - strandat 235.254 kb on - strandat 235.298 kb on - strandat 235.299 kb on + strandat 235.299 kb on + strandat 235.299 kb on + strandat 235.300 kb on - strandat 235.300 kb on - strandat 235.300 kb on - strandat 235.300 kb on - strandat 235.300 kb on - strandat 235.300 kb on - strandat 235.300 kb on - strandat 235.368 kb on + strand, within PfGW456L13_205at 235.368 kb on + strand, within PfGW456L13_205at 235.369 kb on - strand, within PfGW456L13_205at 235.369 kb on - strand, within PfGW456L13_205at 235.378 kb on - strand, within PfGW456L13_205at 235.378 kb on - strand, within PfGW456L13_205at 235.378 kb on - strand, within PfGW456L13_205at 235.411 kb on - strand, within PfGW456L13_205at 235.441 kb on + strand, within PfGW456L13_205at 235.442 kb on - strand, within PfGW456L13_205at 235.442 kb on - strand, within PfGW456L13_205at 235.442 kb on - strand, within PfGW456L13_205at 235.454 kb on + strand, within PfGW456L13_205at 235.455 kb on - strand, within PfGW456L13_205at 235.456 kb on + strand, within PfGW456L13_205at 235.457 kb on - strand, within PfGW456L13_205at 235.457 kb on - strand, within PfGW456L13_205at 235.457 kb on - strand, within PfGW456L13_205at 235.461 kb on + strand, within PfGW456L13_205at 235.461 kb on + strand, within PfGW456L13_205at 235.481 kb on + strandat 235.549 kb on + strandat 235.549 kb on + strandat 235.549 kb on + strandat 235.549 kb on + strandat 235.549 kb on + strandat 235.550 kb on - strandat 235.550 kb on - strandat 235.550 kb on - strandat 235.550 kb on - strandat 235.550 kb on - strandat 235.559 kb on + strandat 235.559 kb on + strandat 235.560 kb on - strandat 235.591 kb on + strandat 235.641 kb on + strandat 235.641 kb on + strandat 235.642 kb on - strandat 235.665 kb on - strandat 235.714 kb on + strandat 235.714 kb on + strandat 235.714 kb on + strandat 235.715 kb on - strandat 235.738 kb on + strandat 235.738 kb on + strandat 235.738 kb on + strandat 235.738 kb on + strandat 235.738 kb on + strandat 235.739 kb on - strandat 235.739 kb on - strandat 235.739 kb on - strandat 235.827 kb on + strandat 235.828 kb on - strandat 235.892 kb on + strandat 235.892 kb on + strandat 235.892 kb on + strandat 235.893 kb on - strandat 235.893 kb on - strandat 235.893 kb on - strandat 236.039 kb on + strandat 236.039 kb on + strandat 236.039 kb on + strandat 236.039 kb on + strandat 236.039 kb on + strandat 236.039 kb on + strandat 236.040 kb on - strandat 236.040 kb on - strandat 236.040 kb on - strandat 236.040 kb on - strandat 236.040 kb on - strandat 236.092 kb on + strandat 236.093 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 5 mM
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232,620 + PfGW456L13_203 0.12 +0.7
232,735 + PfGW456L13_203 0.22 +0.7
232,802 - PfGW456L13_203 0.28 +0.9
232,802 - PfGW456L13_203 0.28 +0.9
232,802 - PfGW456L13_203 0.28 +1.7
232,802 - PfGW456L13_203 0.28 +2.0
232,802 - PfGW456L13_203 0.28 +0.1
232,802 - PfGW456L13_203 0.28 -0.5
232,802 - PfGW456L13_203 0.28 -0.1
232,802 - PfGW456L13_203 0.28 +0.0
232,802 - PfGW456L13_203 0.28 +0.3
232,820 + PfGW456L13_203 0.29 -0.1
232,820 + PfGW456L13_203 0.29 +0.6
232,820 + PfGW456L13_203 0.29 +0.0
232,821 - PfGW456L13_203 0.29 -0.5
232,821 - PfGW456L13_203 0.29 +2.1
232,821 - PfGW456L13_203 0.29 +0.2
232,824 + PfGW456L13_203 0.30 +1.0
232,824 + PfGW456L13_203 0.30 -0.0
232,987 - PfGW456L13_203 0.44 +0.3
233,121 - PfGW456L13_203 0.56 -0.5
233,121 - PfGW456L13_203 0.56 +0.9
233,121 - PfGW456L13_203 0.56 -0.1
233,223 + PfGW456L13_203 0.65 +0.0
233,255 + PfGW456L13_203 0.68 +0.4
233,256 - PfGW456L13_203 0.68 -0.7
233,256 - PfGW456L13_203 0.68 +1.2
233,315 + PfGW456L13_203 0.73 +1.2
233,315 + PfGW456L13_203 0.73 +0.4
233,315 + PfGW456L13_203 0.73 +0.6
233,315 + PfGW456L13_203 0.73 +0.3
233,315 + PfGW456L13_203 0.73 +1.7
233,316 - PfGW456L13_203 0.73 +0.4
233,316 - PfGW456L13_203 0.73 +0.9
233,316 - PfGW456L13_203 0.73 +1.1
233,427 - PfGW456L13_203 0.83 +1.0
233,427 - PfGW456L13_203 0.83 +0.2
233,427 - PfGW456L13_203 0.83 +1.3
233,540 + +0.1
233,668 - -2.5
233,692 + -1.5
233,692 + +1.2
233,692 + +0.5
233,692 + +1.0
233,693 - -0.5
233,693 - -0.1
233,693 - -0.7
233,693 - -1.1
233,803 - PfGW456L13_204 0.11 -1.3
233,803 - PfGW456L13_204 0.11 +0.8
233,806 - PfGW456L13_204 0.12 -0.6
233,815 + PfGW456L13_204 0.12 -1.0
233,816 - PfGW456L13_204 0.12 -0.5
233,816 - PfGW456L13_204 0.12 -1.8
233,816 - PfGW456L13_204 0.12 -1.8
233,816 - PfGW456L13_204 0.12 -1.6
233,816 - PfGW456L13_204 0.12 -2.0
233,817 + PfGW456L13_204 0.12 +1.4
233,818 - PfGW456L13_204 0.12 -1.5
233,818 - PfGW456L13_204 0.12 -1.4
233,818 - PfGW456L13_204 0.12 -2.5
233,818 - PfGW456L13_204 0.12 -0.4
233,818 - PfGW456L13_204 0.12 -1.7
234,247 - PfGW456L13_204 0.37 -0.8
234,294 + PfGW456L13_204 0.39 +1.1
234,294 + PfGW456L13_204 0.39 -0.2
234,294 + PfGW456L13_204 0.39 +2.0
234,294 + PfGW456L13_204 0.39 +0.3
234,295 - PfGW456L13_204 0.39 -1.2
234,295 - PfGW456L13_204 0.39 -0.4
234,295 - PfGW456L13_204 0.39 -1.5
234,295 - PfGW456L13_204 0.39 -1.5
234,295 - PfGW456L13_204 0.39 -1.4
234,295 - PfGW456L13_204 0.39 -1.3
234,295 - PfGW456L13_204 0.39 -2.9
234,295 - PfGW456L13_204 0.39 -0.5
234,295 - PfGW456L13_204 0.39 -0.7
234,418 - PfGW456L13_204 0.46 -1.3
234,418 - PfGW456L13_204 0.46 -0.9
234,457 - PfGW456L13_204 0.49 -1.7
234,457 - PfGW456L13_204 0.49 -1.1
234,457 - PfGW456L13_204 0.49 -1.9
234,457 - PfGW456L13_204 0.49 -1.1
234,514 - PfGW456L13_204 0.52 -1.1
234,522 + PfGW456L13_204 0.52 +0.7
234,522 + PfGW456L13_204 0.52 +0.0
234,522 + PfGW456L13_204 0.52 +0.8
234,522 + PfGW456L13_204 0.52 +1.5
234,522 + PfGW456L13_204 0.52 +0.5
234,522 + PfGW456L13_204 0.52 +1.3
234,523 - PfGW456L13_204 0.52 -1.0
234,523 - PfGW456L13_204 0.52 -1.9
234,523 - PfGW456L13_204 0.52 -0.1
234,523 - PfGW456L13_204 0.52 -1.7
234,523 - PfGW456L13_204 0.52 +1.1
234,523 - PfGW456L13_204 0.52 +0.9
234,523 - PfGW456L13_204 0.52 -2.1
234,523 - PfGW456L13_204 0.52 -2.7
234,523 - PfGW456L13_204 0.52 -0.2
234,523 - PfGW456L13_204 0.52 -1.6
234,523 - PfGW456L13_204 0.52 -1.5
234,523 - PfGW456L13_204 0.52 -1.0
234,588 + PfGW456L13_204 0.56 +0.6
234,588 + PfGW456L13_204 0.56 +0.4
234,588 + PfGW456L13_204 0.56 +1.6
234,589 - PfGW456L13_204 0.56 -1.5
234,589 - PfGW456L13_204 0.56 +0.5
234,589 - PfGW456L13_204 0.56 -2.1
234,589 - PfGW456L13_204 0.56 -2.5
234,589 - PfGW456L13_204 0.56 -1.8
234,589 - PfGW456L13_204 0.56 -1.3
234,589 - PfGW456L13_204 0.56 -0.9
234,589 - PfGW456L13_204 0.56 -2.8
234,589 - PfGW456L13_204 0.56 -2.5
234,589 - PfGW456L13_204 0.56 -1.4
234,589 - PfGW456L13_204 0.56 -2.8
234,591 + PfGW456L13_204 0.56 +0.0
234,591 + PfGW456L13_204 0.56 +1.5
234,591 + PfGW456L13_204 0.56 +1.4
234,592 - PfGW456L13_204 0.56 -0.8
234,592 - PfGW456L13_204 0.56 -1.8
234,697 - PfGW456L13_204 0.62 -1.7
234,787 - PfGW456L13_204 0.67 -1.4
234,787 - PfGW456L13_204 0.67 -1.3
234,787 - PfGW456L13_204 0.67 -1.1
234,934 - PfGW456L13_204 0.76 -2.0
235,045 - PfGW456L13_204 0.82 -1.8
235,045 - PfGW456L13_204 0.82 -2.0
235,093 - PfGW456L13_204 0.85 -0.6
235,111 - PfGW456L13_204 0.86 +0.1
235,221 + -1.2
235,221 + -0.5
235,247 - -1.2
235,254 - -1.9
235,298 - -0.2
235,299 + +2.9
235,299 + -2.0
235,299 + +0.5
235,300 - -0.9
235,300 - -0.3
235,300 - -0.7
235,300 - -3.5
235,300 - -1.3
235,300 - -1.1
235,300 - -2.3
235,368 + PfGW456L13_205 0.30 +1.3
235,368 + PfGW456L13_205 0.30 +0.3
235,369 - PfGW456L13_205 0.30 -1.4
235,369 - PfGW456L13_205 0.30 -3.1
235,378 - PfGW456L13_205 0.36 -1.9
235,378 - PfGW456L13_205 0.36 -1.4
235,378 - PfGW456L13_205 0.36 -0.9
235,411 - PfGW456L13_205 0.56 +1.6
235,441 + PfGW456L13_205 0.74 -0.1
235,442 - PfGW456L13_205 0.75 +1.5
235,442 - PfGW456L13_205 0.75 +0.0
235,442 - PfGW456L13_205 0.75 +0.2
235,454 + PfGW456L13_205 0.82 +0.3
235,455 - PfGW456L13_205 0.82 -0.1
235,456 + PfGW456L13_205 0.83 -2.1
235,457 - PfGW456L13_205 0.84 -1.1
235,457 - PfGW456L13_205 0.84 +1.7
235,457 - PfGW456L13_205 0.84 +0.8
235,461 + PfGW456L13_205 0.86 -2.3
235,461 + PfGW456L13_205 0.86 -1.5
235,481 + +0.0
235,549 + -0.0
235,549 + -0.3
235,549 + -1.3
235,549 + -0.4
235,549 + -0.6
235,550 - +0.1
235,550 - -1.3
235,550 - -0.2
235,550 - +0.2
235,550 - +0.6
235,559 + +1.4
235,559 + -0.7
235,560 - -0.5
235,591 + -0.8
235,641 + -0.4
235,641 + +0.8
235,642 - +1.2
235,665 - -1.3
235,714 + +1.6
235,714 + -1.4
235,714 + -0.8
235,715 - +1.7
235,738 + -0.5
235,738 + -0.8
235,738 + +0.4
235,738 + +0.2
235,738 + -0.8
235,739 - +1.0
235,739 - -0.1
235,739 - +0.2
235,827 + -1.9
235,828 - -2.2
235,892 + -1.8
235,892 + +0.1
235,892 + -0.1
235,893 - -0.1
235,893 - +1.0
235,893 - +0.7
236,039 + +0.5
236,039 + -0.2
236,039 + +0.5
236,039 + +0.4
236,039 + +0.1
236,039 + +0.0
236,040 - +0.5
236,040 - +1.5
236,040 - -1.4
236,040 - -0.0
236,040 - +0.4
236,092 + +0.8
236,093 - -0.6

Or see this region's nucleotide sequence