Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_202

Experiment: Aluminum chloride 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_201 and PfGW456L13_202 overlap by 31 nucleotidesPfGW456L13_202 and PfGW456L13_203 overlap by 1 nucleotides PfGW456L13_201 - Hypothetical protein FIG015671 in large core OS assembly cluster, at 230,142 to 231,623 _201 PfGW456L13_202 - Probable transcription regulator Mig-14, at 231,593 to 232,489 _202 PfGW456L13_203 - Glycosyl transferase in large core OS assembly cluster, at 232,489 to 233,619 _203 Position (kb) 231 232 233Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 230.808 kb on + strand, within PfGW456L13_201at 230.809 kb on - strand, within PfGW456L13_201at 230.827 kb on - strand, within PfGW456L13_201at 230.983 kb on + strand, within PfGW456L13_201at 230.993 kb on - strand, within PfGW456L13_201at 231.166 kb on + strand, within PfGW456L13_201at 231.245 kb on + strand, within PfGW456L13_201at 231.246 kb on - strand, within PfGW456L13_201at 231.386 kb on - strand, within PfGW456L13_201at 231.409 kb on + strand, within PfGW456L13_201at 231.409 kb on + strand, within PfGW456L13_201at 231.542 kb on + strandat 231.597 kb on - strandat 231.636 kb on + strandat 231.636 kb on + strandat 231.728 kb on + strand, within PfGW456L13_202at 231.780 kb on + strand, within PfGW456L13_202at 231.816 kb on + strand, within PfGW456L13_202at 231.957 kb on + strand, within PfGW456L13_202at 231.957 kb on + strand, within PfGW456L13_202at 231.957 kb on + strand, within PfGW456L13_202at 231.957 kb on + strand, within PfGW456L13_202at 231.957 kb on + strand, within PfGW456L13_202at 231.957 kb on + strand, within PfGW456L13_202at 232.152 kb on + strand, within PfGW456L13_202at 232.152 kb on + strand, within PfGW456L13_202at 232.152 kb on + strand, within PfGW456L13_202at 232.428 kb on + strandat 232.428 kb on + strandat 232.432 kb on + strandat 232.432 kb on + strandat 232.432 kb on + strandat 232.432 kb on + strandat 232.620 kb on + strand, within PfGW456L13_203at 232.735 kb on + strand, within PfGW456L13_203at 232.802 kb on - strand, within PfGW456L13_203at 232.802 kb on - strand, within PfGW456L13_203at 232.802 kb on - strand, within PfGW456L13_203at 232.802 kb on - strand, within PfGW456L13_203at 232.802 kb on - strand, within PfGW456L13_203at 232.802 kb on - strand, within PfGW456L13_203at 232.802 kb on - strand, within PfGW456L13_203at 232.802 kb on - strand, within PfGW456L13_203at 232.802 kb on - strand, within PfGW456L13_203at 232.820 kb on + strand, within PfGW456L13_203at 232.820 kb on + strand, within PfGW456L13_203at 232.820 kb on + strand, within PfGW456L13_203at 232.821 kb on - strand, within PfGW456L13_203at 232.821 kb on - strand, within PfGW456L13_203at 232.821 kb on - strand, within PfGW456L13_203at 232.824 kb on + strand, within PfGW456L13_203at 232.824 kb on + strand, within PfGW456L13_203at 232.987 kb on - strand, within PfGW456L13_203at 233.121 kb on - strand, within PfGW456L13_203at 233.121 kb on - strand, within PfGW456L13_203at 233.121 kb on - strand, within PfGW456L13_203at 233.223 kb on + strand, within PfGW456L13_203at 233.255 kb on + strand, within PfGW456L13_203at 233.256 kb on - strand, within PfGW456L13_203at 233.256 kb on - strand, within PfGW456L13_203at 233.315 kb on + strand, within PfGW456L13_203at 233.315 kb on + strand, within PfGW456L13_203at 233.315 kb on + strand, within PfGW456L13_203at 233.315 kb on + strand, within PfGW456L13_203at 233.315 kb on + strand, within PfGW456L13_203at 233.316 kb on - strand, within PfGW456L13_203at 233.316 kb on - strand, within PfGW456L13_203at 233.316 kb on - strand, within PfGW456L13_203at 233.427 kb on - strand, within PfGW456L13_203at 233.427 kb on - strand, within PfGW456L13_203at 233.427 kb on - strand, within PfGW456L13_203

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 5 mM
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230,808 + PfGW456L13_201 0.45 -1.9
230,809 - PfGW456L13_201 0.45 -0.1
230,827 - PfGW456L13_201 0.46 -0.1
230,983 + PfGW456L13_201 0.57 -2.9
230,993 - PfGW456L13_201 0.57 -1.5
231,166 + PfGW456L13_201 0.69 -1.2
231,245 + PfGW456L13_201 0.74 -0.3
231,246 - PfGW456L13_201 0.74 -3.7
231,386 - PfGW456L13_201 0.84 -2.8
231,409 + PfGW456L13_201 0.85 -1.7
231,409 + PfGW456L13_201 0.85 +0.9
231,542 + +1.5
231,597 - -0.3
231,636 + -1.5
231,636 + -0.8
231,728 + PfGW456L13_202 0.15 -0.3
231,780 + PfGW456L13_202 0.21 -0.4
231,816 + PfGW456L13_202 0.25 -0.6
231,957 + PfGW456L13_202 0.41 -2.4
231,957 + PfGW456L13_202 0.41 -0.9
231,957 + PfGW456L13_202 0.41 -1.4
231,957 + PfGW456L13_202 0.41 -0.0
231,957 + PfGW456L13_202 0.41 -0.5
231,957 + PfGW456L13_202 0.41 +0.5
232,152 + PfGW456L13_202 0.62 -0.5
232,152 + PfGW456L13_202 0.62 -1.0
232,152 + PfGW456L13_202 0.62 -0.5
232,428 + +0.1
232,428 + +0.6
232,432 + -0.9
232,432 + +1.0
232,432 + -1.1
232,432 + -0.1
232,620 + PfGW456L13_203 0.12 +0.7
232,735 + PfGW456L13_203 0.22 +0.7
232,802 - PfGW456L13_203 0.28 +0.9
232,802 - PfGW456L13_203 0.28 +0.9
232,802 - PfGW456L13_203 0.28 +1.7
232,802 - PfGW456L13_203 0.28 +2.0
232,802 - PfGW456L13_203 0.28 +0.1
232,802 - PfGW456L13_203 0.28 -0.5
232,802 - PfGW456L13_203 0.28 -0.1
232,802 - PfGW456L13_203 0.28 +0.0
232,802 - PfGW456L13_203 0.28 +0.3
232,820 + PfGW456L13_203 0.29 -0.1
232,820 + PfGW456L13_203 0.29 +0.6
232,820 + PfGW456L13_203 0.29 +0.0
232,821 - PfGW456L13_203 0.29 -0.5
232,821 - PfGW456L13_203 0.29 +2.1
232,821 - PfGW456L13_203 0.29 +0.2
232,824 + PfGW456L13_203 0.30 +1.0
232,824 + PfGW456L13_203 0.30 -0.0
232,987 - PfGW456L13_203 0.44 +0.3
233,121 - PfGW456L13_203 0.56 -0.5
233,121 - PfGW456L13_203 0.56 +0.9
233,121 - PfGW456L13_203 0.56 -0.1
233,223 + PfGW456L13_203 0.65 +0.0
233,255 + PfGW456L13_203 0.68 +0.4
233,256 - PfGW456L13_203 0.68 -0.7
233,256 - PfGW456L13_203 0.68 +1.2
233,315 + PfGW456L13_203 0.73 +1.2
233,315 + PfGW456L13_203 0.73 +0.4
233,315 + PfGW456L13_203 0.73 +0.6
233,315 + PfGW456L13_203 0.73 +0.3
233,315 + PfGW456L13_203 0.73 +1.7
233,316 - PfGW456L13_203 0.73 +0.4
233,316 - PfGW456L13_203 0.73 +0.9
233,316 - PfGW456L13_203 0.73 +1.1
233,427 - PfGW456L13_203 0.83 +1.0
233,427 - PfGW456L13_203 0.83 +0.2
233,427 - PfGW456L13_203 0.83 +1.3

Or see this region's nucleotide sequence