Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1970

Experiment: Aluminum chloride 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1969 and PfGW456L13_1970 are separated by 4 nucleotidesPfGW456L13_1970 and PfGW456L13_1971 overlap by 15 nucleotides PfGW456L13_1969 - FIG00963434: hypothetical protein, at 2,167,979 to 2,173,006 _1969 PfGW456L13_1970 - hypothetical protein, at 2,173,011 to 2,173,334 _1970 PfGW456L13_1971 - Succinylornithine transaminase (EC 2.6.1.81), at 2,173,320 to 2,174,540 _1971 Position (kb) 2173 2174Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2172.060 kb on + strand, within PfGW456L13_1969at 2172.061 kb on - strand, within PfGW456L13_1969at 2172.061 kb on - strand, within PfGW456L13_1969at 2172.096 kb on + strand, within PfGW456L13_1969at 2172.096 kb on + strand, within PfGW456L13_1969at 2172.096 kb on + strand, within PfGW456L13_1969at 2172.096 kb on + strand, within PfGW456L13_1969at 2172.096 kb on + strand, within PfGW456L13_1969at 2172.096 kb on + strand, within PfGW456L13_1969at 2172.193 kb on - strand, within PfGW456L13_1969at 2172.218 kb on + strand, within PfGW456L13_1969at 2172.218 kb on + strand, within PfGW456L13_1969at 2172.218 kb on + strand, within PfGW456L13_1969at 2172.218 kb on + strand, within PfGW456L13_1969at 2172.219 kb on - strand, within PfGW456L13_1969at 2172.219 kb on - strand, within PfGW456L13_1969at 2172.219 kb on - strand, within PfGW456L13_1969at 2172.350 kb on + strand, within PfGW456L13_1969at 2172.351 kb on - strand, within PfGW456L13_1969at 2172.396 kb on + strand, within PfGW456L13_1969at 2172.396 kb on + strand, within PfGW456L13_1969at 2172.397 kb on - strand, within PfGW456L13_1969at 2172.403 kb on + strand, within PfGW456L13_1969at 2172.403 kb on + strand, within PfGW456L13_1969at 2172.403 kb on + strand, within PfGW456L13_1969at 2172.404 kb on - strand, within PfGW456L13_1969at 2172.405 kb on + strand, within PfGW456L13_1969at 2172.405 kb on + strand, within PfGW456L13_1969at 2172.406 kb on - strand, within PfGW456L13_1969at 2172.406 kb on - strand, within PfGW456L13_1969at 2172.442 kb on + strand, within PfGW456L13_1969at 2172.442 kb on + strand, within PfGW456L13_1969at 2172.443 kb on - strand, within PfGW456L13_1969at 2172.443 kb on - strand, within PfGW456L13_1969at 2172.470 kb on + strand, within PfGW456L13_1969at 2172.471 kb on - strand, within PfGW456L13_1969at 2172.484 kb on + strand, within PfGW456L13_1969at 2172.484 kb on + strand, within PfGW456L13_1969at 2172.484 kb on + strand, within PfGW456L13_1969at 2172.484 kb on + strand, within PfGW456L13_1969at 2172.484 kb on + strand, within PfGW456L13_1969at 2172.484 kb on + strand, within PfGW456L13_1969at 2172.485 kb on - strand, within PfGW456L13_1969at 2172.485 kb on - strand, within PfGW456L13_1969at 2172.485 kb on - strand, within PfGW456L13_1969at 2172.485 kb on - strand, within PfGW456L13_1969at 2172.485 kb on - strand, within PfGW456L13_1969at 2172.519 kb on + strandat 2172.519 kb on + strandat 2172.519 kb on + strandat 2172.519 kb on + strandat 2172.519 kb on + strandat 2172.519 kb on + strandat 2172.520 kb on - strandat 2172.520 kb on - strandat 2172.520 kb on - strandat 2172.520 kb on - strandat 2172.657 kb on + strandat 2172.657 kb on + strandat 2172.657 kb on + strandat 2172.657 kb on + strandat 2172.658 kb on - strandat 2172.658 kb on - strandat 2172.658 kb on - strandat 2172.658 kb on - strandat 2172.980 kb on - strandat 2172.991 kb on + strandat 2172.991 kb on + strandat 2172.991 kb on + strandat 2172.991 kb on + strandat 2172.991 kb on + strandat 2172.991 kb on + strandat 2172.991 kb on + strandat 2173.000 kb on + strandat 2173.012 kb on + strandat 2173.075 kb on + strand, within PfGW456L13_1970at 2173.075 kb on + strand, within PfGW456L13_1970at 2173.076 kb on - strand, within PfGW456L13_1970at 2173.079 kb on + strand, within PfGW456L13_1970at 2173.079 kb on + strand, within PfGW456L13_1970at 2173.079 kb on + strand, within PfGW456L13_1970at 2173.079 kb on + strand, within PfGW456L13_1970at 2173.079 kb on + strand, within PfGW456L13_1970at 2173.079 kb on + strand, within PfGW456L13_1970at 2173.079 kb on + strand, within PfGW456L13_1970at 2173.079 kb on + strand, within PfGW456L13_1970at 2173.079 kb on + strand, within PfGW456L13_1970at 2173.079 kb on + strand, within PfGW456L13_1970at 2173.079 kb on + strand, within PfGW456L13_1970at 2173.079 kb on + strand, within PfGW456L13_1970at 2173.079 kb on + strand, within PfGW456L13_1970at 2173.079 kb on + strand, within PfGW456L13_1970at 2173.079 kb on + strand, within PfGW456L13_1970at 2173.079 kb on + strand, within PfGW456L13_1970at 2173.079 kb on + strand, within PfGW456L13_1970at 2173.079 kb on + strand, within PfGW456L13_1970at 2173.079 kb on + strand, within PfGW456L13_1970at 2173.079 kb on + strand, within PfGW456L13_1970at 2173.079 kb on + strand, within PfGW456L13_1970at 2173.079 kb on + strand, within PfGW456L13_1970at 2173.079 kb on + strand, within PfGW456L13_1970at 2173.079 kb on + strand, within PfGW456L13_1970at 2173.079 kb on + strand, within PfGW456L13_1970at 2173.079 kb on + strand, within PfGW456L13_1970at 2173.079 kb on + strand, within PfGW456L13_1970at 2173.079 kb on + strand, within PfGW456L13_1970at 2173.079 kb on + strand, within PfGW456L13_1970at 2173.079 kb on + strand, within PfGW456L13_1970at 2173.079 kb on + strand, within PfGW456L13_1970at 2173.079 kb on + strand, within PfGW456L13_1970at 2173.079 kb on + strand, within PfGW456L13_1970at 2173.079 kb on + strand, within PfGW456L13_1970at 2173.079 kb on + strand, within PfGW456L13_1970at 2173.079 kb on + strand, within PfGW456L13_1970at 2173.079 kb on + strand, within PfGW456L13_1970at 2173.080 kb on - strand, within PfGW456L13_1970at 2173.080 kb on - strand, within PfGW456L13_1970at 2173.080 kb on - strand, within PfGW456L13_1970at 2173.080 kb on - strand, within PfGW456L13_1970at 2173.080 kb on - strand, within PfGW456L13_1970at 2173.080 kb on - strand, within PfGW456L13_1970at 2173.080 kb on - strand, within PfGW456L13_1970at 2173.083 kb on + strand, within PfGW456L13_1970at 2173.083 kb on + strand, within PfGW456L13_1970at 2173.084 kb on - strand, within PfGW456L13_1970at 2173.110 kb on + strand, within PfGW456L13_1970at 2173.110 kb on + strand, within PfGW456L13_1970at 2173.110 kb on + strand, within PfGW456L13_1970at 2173.110 kb on + strand, within PfGW456L13_1970at 2173.110 kb on + strand, within PfGW456L13_1970at 2173.111 kb on - strand, within PfGW456L13_1970at 2173.111 kb on - strand, within PfGW456L13_1970at 2173.111 kb on - strand, within PfGW456L13_1970at 2173.170 kb on + strand, within PfGW456L13_1970at 2173.170 kb on + strand, within PfGW456L13_1970at 2173.170 kb on + strand, within PfGW456L13_1970at 2173.171 kb on - strand, within PfGW456L13_1970at 2173.171 kb on - strand, within PfGW456L13_1970at 2173.171 kb on - strand, within PfGW456L13_1970at 2173.172 kb on + strand, within PfGW456L13_1970at 2173.172 kb on + strand, within PfGW456L13_1970at 2173.172 kb on + strand, within PfGW456L13_1970at 2173.173 kb on - strand, within PfGW456L13_1970at 2173.173 kb on - strand, within PfGW456L13_1970at 2173.173 kb on - strand, within PfGW456L13_1970at 2173.173 kb on - strand, within PfGW456L13_1970at 2173.173 kb on - strand, within PfGW456L13_1970at 2173.173 kb on - strand, within PfGW456L13_1970at 2173.215 kb on + strand, within PfGW456L13_1970at 2173.217 kb on + strand, within PfGW456L13_1970at 2173.217 kb on + strand, within PfGW456L13_1970at 2173.217 kb on + strand, within PfGW456L13_1970at 2173.217 kb on + strand, within PfGW456L13_1970at 2173.217 kb on + strand, within PfGW456L13_1970at 2173.217 kb on + strand, within PfGW456L13_1970at 2173.217 kb on + strand, within PfGW456L13_1970at 2173.217 kb on + strand, within PfGW456L13_1970at 2173.217 kb on + strand, within PfGW456L13_1970at 2173.217 kb on + strand, within PfGW456L13_1970at 2173.262 kb on + strand, within PfGW456L13_1970at 2173.262 kb on + strand, within PfGW456L13_1970at 2173.380 kb on + strandat 2173.380 kb on + strandat 2173.380 kb on + strandat 2173.381 kb on - strandat 2173.483 kb on + strand, within PfGW456L13_1971at 2173.483 kb on + strand, within PfGW456L13_1971at 2173.713 kb on + strand, within PfGW456L13_1971at 2173.788 kb on + strand, within PfGW456L13_1971at 2173.788 kb on + strand, within PfGW456L13_1971at 2173.788 kb on + strand, within PfGW456L13_1971at 2173.836 kb on + strand, within PfGW456L13_1971at 2173.836 kb on + strand, within PfGW456L13_1971at 2173.836 kb on + strand, within PfGW456L13_1971at 2173.836 kb on + strand, within PfGW456L13_1971at 2173.836 kb on + strand, within PfGW456L13_1971at 2173.836 kb on + strand, within PfGW456L13_1971at 2173.836 kb on + strand, within PfGW456L13_1971at 2173.901 kb on + strand, within PfGW456L13_1971at 2173.901 kb on + strand, within PfGW456L13_1971at 2173.901 kb on + strand, within PfGW456L13_1971at 2173.901 kb on + strand, within PfGW456L13_1971at 2173.921 kb on + strand, within PfGW456L13_1971at 2173.941 kb on + strand, within PfGW456L13_1971at 2174.172 kb on + strand, within PfGW456L13_1971

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 5 mM
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2,172,060 + PfGW456L13_1969 0.81 +1.9
2,172,061 - PfGW456L13_1969 0.81 +2.0
2,172,061 - PfGW456L13_1969 0.81 -1.4
2,172,096 + PfGW456L13_1969 0.82 +0.7
2,172,096 + PfGW456L13_1969 0.82 -0.1
2,172,096 + PfGW456L13_1969 0.82 -0.1
2,172,096 + PfGW456L13_1969 0.82 +0.7
2,172,096 + PfGW456L13_1969 0.82 +0.6
2,172,096 + PfGW456L13_1969 0.82 +1.5
2,172,193 - PfGW456L13_1969 0.84 +0.4
2,172,218 + PfGW456L13_1969 0.84 +1.0
2,172,218 + PfGW456L13_1969 0.84 +1.0
2,172,218 + PfGW456L13_1969 0.84 +0.7
2,172,218 + PfGW456L13_1969 0.84 +1.3
2,172,219 - PfGW456L13_1969 0.84 -0.2
2,172,219 - PfGW456L13_1969 0.84 +0.1
2,172,219 - PfGW456L13_1969 0.84 +0.1
2,172,350 + PfGW456L13_1969 0.87 +1.4
2,172,351 - PfGW456L13_1969 0.87 +0.4
2,172,396 + PfGW456L13_1969 0.88 +0.9
2,172,396 + PfGW456L13_1969 0.88 +0.4
2,172,397 - PfGW456L13_1969 0.88 -0.3
2,172,403 + PfGW456L13_1969 0.88 +0.4
2,172,403 + PfGW456L13_1969 0.88 +0.4
2,172,403 + PfGW456L13_1969 0.88 +0.6
2,172,404 - PfGW456L13_1969 0.88 -1.3
2,172,405 + PfGW456L13_1969 0.88 +0.6
2,172,405 + PfGW456L13_1969 0.88 +0.7
2,172,406 - PfGW456L13_1969 0.88 +2.0
2,172,406 - PfGW456L13_1969 0.88 -0.4
2,172,442 + PfGW456L13_1969 0.89 +0.3
2,172,442 + PfGW456L13_1969 0.89 -1.6
2,172,443 - PfGW456L13_1969 0.89 +0.9
2,172,443 - PfGW456L13_1969 0.89 -0.6
2,172,470 + PfGW456L13_1969 0.89 +0.6
2,172,471 - PfGW456L13_1969 0.89 +0.6
2,172,484 + PfGW456L13_1969 0.90 -1.2
2,172,484 + PfGW456L13_1969 0.90 +0.7
2,172,484 + PfGW456L13_1969 0.90 +1.5
2,172,484 + PfGW456L13_1969 0.90 +0.1
2,172,484 + PfGW456L13_1969 0.90 +1.9
2,172,484 + PfGW456L13_1969 0.90 +0.1
2,172,485 - PfGW456L13_1969 0.90 -0.4
2,172,485 - PfGW456L13_1969 0.90 +0.2
2,172,485 - PfGW456L13_1969 0.90 -0.1
2,172,485 - PfGW456L13_1969 0.90 +0.8
2,172,485 - PfGW456L13_1969 0.90 -0.6
2,172,519 + +0.9
2,172,519 + -0.2
2,172,519 + +1.1
2,172,519 + +0.8
2,172,519 + +2.4
2,172,519 + -1.4
2,172,520 - +1.1
2,172,520 - -0.8
2,172,520 - -1.0
2,172,520 - -0.6
2,172,657 + +0.4
2,172,657 + +0.3
2,172,657 + +0.7
2,172,657 + -0.1
2,172,658 - -0.2
2,172,658 - +0.3
2,172,658 - -0.3
2,172,658 - -0.6
2,172,980 - +1.4
2,172,991 + +0.6
2,172,991 + -0.1
2,172,991 + +0.3
2,172,991 + +0.8
2,172,991 + +0.3
2,172,991 + +1.3
2,172,991 + +1.0
2,173,000 + +1.2
2,173,012 + +1.0
2,173,075 + PfGW456L13_1970 0.20 +1.3
2,173,075 + PfGW456L13_1970 0.20 +0.5
2,173,076 - PfGW456L13_1970 0.20 -2.0
2,173,079 + PfGW456L13_1970 0.21 +0.9
2,173,079 + PfGW456L13_1970 0.21 +0.4
2,173,079 + PfGW456L13_1970 0.21 +1.4
2,173,079 + PfGW456L13_1970 0.21 +0.5
2,173,079 + PfGW456L13_1970 0.21 +1.0
2,173,079 + PfGW456L13_1970 0.21 +0.8
2,173,079 + PfGW456L13_1970 0.21 -0.4
2,173,079 + PfGW456L13_1970 0.21 +1.7
2,173,079 + PfGW456L13_1970 0.21 +1.4
2,173,079 + PfGW456L13_1970 0.21 +0.9
2,173,079 + PfGW456L13_1970 0.21 +1.2
2,173,079 + PfGW456L13_1970 0.21 +1.2
2,173,079 + PfGW456L13_1970 0.21 +1.6
2,173,079 + PfGW456L13_1970 0.21 +1.1
2,173,079 + PfGW456L13_1970 0.21 -0.0
2,173,079 + PfGW456L13_1970 0.21 +0.9
2,173,079 + PfGW456L13_1970 0.21 +0.6
2,173,079 + PfGW456L13_1970 0.21 +2.4
2,173,079 + PfGW456L13_1970 0.21 -0.0
2,173,079 + PfGW456L13_1970 0.21 +0.1
2,173,079 + PfGW456L13_1970 0.21 +0.8
2,173,079 + PfGW456L13_1970 0.21 +0.9
2,173,079 + PfGW456L13_1970 0.21 -0.4
2,173,079 + PfGW456L13_1970 0.21 +0.4
2,173,079 + PfGW456L13_1970 0.21 +0.5
2,173,079 + PfGW456L13_1970 0.21 +1.4
2,173,079 + PfGW456L13_1970 0.21 +1.3
2,173,079 + PfGW456L13_1970 0.21 +0.4
2,173,079 + PfGW456L13_1970 0.21 +0.7
2,173,079 + PfGW456L13_1970 0.21 -0.2
2,173,079 + PfGW456L13_1970 0.21 -0.3
2,173,079 + PfGW456L13_1970 0.21 -0.1
2,173,079 + PfGW456L13_1970 0.21 +0.3
2,173,079 + PfGW456L13_1970 0.21 +1.1
2,173,079 + PfGW456L13_1970 0.21 +0.8
2,173,079 + PfGW456L13_1970 0.21 +0.6
2,173,079 + PfGW456L13_1970 0.21 +2.5
2,173,080 - PfGW456L13_1970 0.21 +1.6
2,173,080 - PfGW456L13_1970 0.21 +0.5
2,173,080 - PfGW456L13_1970 0.21 -1.9
2,173,080 - PfGW456L13_1970 0.21 -0.4
2,173,080 - PfGW456L13_1970 0.21 -0.9
2,173,080 - PfGW456L13_1970 0.21 -2.0
2,173,080 - PfGW456L13_1970 0.21 -1.4
2,173,083 + PfGW456L13_1970 0.22 +1.1
2,173,083 + PfGW456L13_1970 0.22 +0.9
2,173,084 - PfGW456L13_1970 0.23 -0.4
2,173,110 + PfGW456L13_1970 0.31 +1.8
2,173,110 + PfGW456L13_1970 0.31 +0.6
2,173,110 + PfGW456L13_1970 0.31 +0.7
2,173,110 + PfGW456L13_1970 0.31 +0.8
2,173,110 + PfGW456L13_1970 0.31 +0.5
2,173,111 - PfGW456L13_1970 0.31 -0.7
2,173,111 - PfGW456L13_1970 0.31 -1.0
2,173,111 - PfGW456L13_1970 0.31 -1.9
2,173,170 + PfGW456L13_1970 0.49 +1.0
2,173,170 + PfGW456L13_1970 0.49 +1.1
2,173,170 + PfGW456L13_1970 0.49 +1.4
2,173,171 - PfGW456L13_1970 0.49 -1.6
2,173,171 - PfGW456L13_1970 0.49 -1.7
2,173,171 - PfGW456L13_1970 0.49 +1.0
2,173,172 + PfGW456L13_1970 0.50 +1.5
2,173,172 + PfGW456L13_1970 0.50 +0.7
2,173,172 + PfGW456L13_1970 0.50 +1.4
2,173,173 - PfGW456L13_1970 0.50 -0.1
2,173,173 - PfGW456L13_1970 0.50 -2.9
2,173,173 - PfGW456L13_1970 0.50 +1.1
2,173,173 - PfGW456L13_1970 0.50 -0.3
2,173,173 - PfGW456L13_1970 0.50 -2.2
2,173,173 - PfGW456L13_1970 0.50 -0.4
2,173,215 + PfGW456L13_1970 0.63 -0.1
2,173,217 + PfGW456L13_1970 0.64 -0.9
2,173,217 + PfGW456L13_1970 0.64 +0.3
2,173,217 + PfGW456L13_1970 0.64 +1.2
2,173,217 + PfGW456L13_1970 0.64 -0.4
2,173,217 + PfGW456L13_1970 0.64 +0.9
2,173,217 + PfGW456L13_1970 0.64 +0.4
2,173,217 + PfGW456L13_1970 0.64 +2.1
2,173,217 + PfGW456L13_1970 0.64 +0.6
2,173,217 + PfGW456L13_1970 0.64 +0.5
2,173,217 + PfGW456L13_1970 0.64 -0.1
2,173,262 + PfGW456L13_1970 0.77 +0.5
2,173,262 + PfGW456L13_1970 0.77 +1.1
2,173,380 + -2.5
2,173,380 + -2.8
2,173,380 + +0.7
2,173,381 - -3.2
2,173,483 + PfGW456L13_1971 0.13 -0.8
2,173,483 + PfGW456L13_1971 0.13 +0.0
2,173,713 + PfGW456L13_1971 0.32 -0.4
2,173,788 + PfGW456L13_1971 0.38 -1.9
2,173,788 + PfGW456L13_1971 0.38 +1.0
2,173,788 + PfGW456L13_1971 0.38 -1.8
2,173,836 + PfGW456L13_1971 0.42 +0.6
2,173,836 + PfGW456L13_1971 0.42 +0.1
2,173,836 + PfGW456L13_1971 0.42 +1.4
2,173,836 + PfGW456L13_1971 0.42 +1.1
2,173,836 + PfGW456L13_1971 0.42 +0.4
2,173,836 + PfGW456L13_1971 0.42 +0.4
2,173,836 + PfGW456L13_1971 0.42 -1.9
2,173,901 + PfGW456L13_1971 0.48 -2.3
2,173,901 + PfGW456L13_1971 0.48 +1.2
2,173,901 + PfGW456L13_1971 0.48 +0.4
2,173,901 + PfGW456L13_1971 0.48 -0.4
2,173,921 + PfGW456L13_1971 0.49 +1.2
2,173,941 + PfGW456L13_1971 0.51 +0.7
2,174,172 + PfGW456L13_1971 0.70 -1.3

Or see this region's nucleotide sequence