Experiment: Aluminum chloride 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_1932 and PfGW456L13_1933 are separated by 156 nucleotides PfGW456L13_1933 and PfGW456L13_1934 are separated by 66 nucleotides PfGW456L13_1934 and PfGW456L13_1935 are separated by 1 nucleotides PfGW456L13_1935 and PfGW456L13_1936 overlap by 16 nucleotides
PfGW456L13_1932 - Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1), at 2,124,798 to 2,125,268
_1932
PfGW456L13_1933 - Ketosteroid isomerase homolog, at 2,125,425 to 2,125,850
_1933
PfGW456L13_1934 - DGPFAETKE, at 2,125,917 to 2,126,261
_1934
PfGW456L13_1935 - RNA polymerase sigma-70 factor, ECF subfamily, at 2,126,263 to 2,127,072
_1935
PfGW456L13_1936 - RNA polymerase sigma-70 factor, ECF subfamily, at 2,127,057 to 2,127,497
_1936
Position (kb)
2125
2126
2127 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2125.261 kb on + strand at 2125.262 kb on - strand at 2125.262 kb on - strand at 2125.351 kb on + strand at 2125.387 kb on + strand at 2125.388 kb on - strand at 2125.402 kb on + strand at 2125.402 kb on + strand at 2125.402 kb on + strand at 2125.403 kb on - strand at 2125.404 kb on + strand at 2125.404 kb on + strand at 2125.404 kb on + strand at 2125.404 kb on + strand at 2125.405 kb on - strand at 2125.405 kb on - strand at 2125.464 kb on + strand at 2125.464 kb on + strand at 2125.465 kb on - strand at 2125.465 kb on - strand at 2125.832 kb on - strand at 2125.889 kb on + strand at 2125.889 kb on + strand at 2125.889 kb on + strand at 2125.890 kb on - strand at 2125.890 kb on - strand at 2125.890 kb on - strand at 2125.890 kb on - strand at 2125.890 kb on - strand at 2125.923 kb on + strand at 2125.923 kb on + strand at 2125.923 kb on + strand at 2125.923 kb on + strand at 2125.923 kb on + strand at 2125.923 kb on + strand at 2125.923 kb on + strand at 2125.923 kb on + strand at 2125.923 kb on + strand at 2125.923 kb on + strand at 2125.923 kb on + strand at 2125.924 kb on - strand at 2125.924 kb on - strand at 2125.924 kb on - strand at 2125.924 kb on - strand at 2125.924 kb on - strand at 2125.924 kb on - strand at 2125.924 kb on - strand at 2125.927 kb on + strand at 2125.927 kb on + strand at 2125.927 kb on + strand at 2125.927 kb on + strand at 2125.928 kb on - strand at 2125.928 kb on - strand at 2125.928 kb on - strand at 2125.928 kb on - strand at 2125.928 kb on - strand at 2125.928 kb on - strand at 2125.938 kb on + strand at 2125.938 kb on + strand at 2125.939 kb on - strand at 2125.939 kb on - strand at 2126.001 kb on + strand, within PfGW456L13_1934 at 2126.001 kb on + strand, within PfGW456L13_1934 at 2126.001 kb on + strand, within PfGW456L13_1934 at 2126.259 kb on + strand at 2126.259 kb on + strand at 2126.260 kb on - strand at 2126.819 kb on + strand, within PfGW456L13_1935 at 2126.819 kb on + strand, within PfGW456L13_1935 at 2126.819 kb on + strand, within PfGW456L13_1935 at 2126.819 kb on + strand, within PfGW456L13_1935 at 2126.819 kb on + strand, within PfGW456L13_1935 at 2126.819 kb on + strand, within PfGW456L13_1935 at 2126.819 kb on + strand, within PfGW456L13_1935 at 2126.819 kb on + strand, within PfGW456L13_1935 at 2126.820 kb on - strand, within PfGW456L13_1935 at 2126.820 kb on - strand, within PfGW456L13_1935 at 2126.820 kb on - strand, within PfGW456L13_1935 at 2126.820 kb on - strand, within PfGW456L13_1935 at 2126.820 kb on - strand, within PfGW456L13_1935 at 2126.833 kb on + strand, within PfGW456L13_1935 at 2126.833 kb on + strand, within PfGW456L13_1935 at 2126.833 kb on + strand, within PfGW456L13_1935 at 2126.833 kb on + strand, within PfGW456L13_1935 at 2126.834 kb on - strand, within PfGW456L13_1935 at 2126.834 kb on - strand, within PfGW456L13_1935 at 2126.834 kb on - strand, within PfGW456L13_1935 at 2127.129 kb on + strand, within PfGW456L13_1936 at 2127.213 kb on + strand, within PfGW456L13_1936 at 2127.214 kb on - strand, within PfGW456L13_1936
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum chloride 5 mM remove 2,125,261 + +0.6 2,125,262 - -1.2 2,125,262 - +1.2 2,125,351 + +0.6 2,125,387 + +0.7 2,125,388 - -0.2 2,125,402 + +1.5 2,125,402 + +0.1 2,125,402 + +0.0 2,125,403 - -0.8 2,125,404 + -0.2 2,125,404 + +1.2 2,125,404 + +1.2 2,125,404 + -1.2 2,125,405 - +0.5 2,125,405 - -1.1 2,125,464 + +1.3 2,125,464 + -2.2 2,125,465 - -0.4 2,125,465 - -0.7 2,125,832 - +0.3 2,125,889 + -1.0 2,125,889 + -0.8 2,125,889 + +1.2 2,125,890 - +1.4 2,125,890 - -0.8 2,125,890 - +0.2 2,125,890 - -0.4 2,125,890 - +1.2 2,125,923 + -0.1 2,125,923 + -1.0 2,125,923 + -0.3 2,125,923 + +0.8 2,125,923 + +0.1 2,125,923 + +0.2 2,125,923 + +1.3 2,125,923 + -1.3 2,125,923 + -2.5 2,125,923 + -0.5 2,125,923 + +0.8 2,125,924 - +0.8 2,125,924 - -0.0 2,125,924 - -0.5 2,125,924 - -2.2 2,125,924 - -2.2 2,125,924 - +0.2 2,125,924 - -0.3 2,125,927 + -0.7 2,125,927 + +0.9 2,125,927 + -0.6 2,125,927 + +1.0 2,125,928 - +1.1 2,125,928 - +0.2 2,125,928 - +0.1 2,125,928 - +1.7 2,125,928 - -0.6 2,125,928 - +0.5 2,125,938 + -0.9 2,125,938 + -0.8 2,125,939 - +1.3 2,125,939 - -0.8 2,126,001 + PfGW456L13_1934 0.24 +0.0 2,126,001 + PfGW456L13_1934 0.24 -0.5 2,126,001 + PfGW456L13_1934 0.24 -1.3 2,126,259 + -0.7 2,126,259 + +0.8 2,126,260 - +0.9 2,126,819 + PfGW456L13_1935 0.69 -0.1 2,126,819 + PfGW456L13_1935 0.69 +0.2 2,126,819 + PfGW456L13_1935 0.69 +1.0 2,126,819 + PfGW456L13_1935 0.69 +0.6 2,126,819 + PfGW456L13_1935 0.69 +0.3 2,126,819 + PfGW456L13_1935 0.69 -0.4 2,126,819 + PfGW456L13_1935 0.69 +1.8 2,126,819 + PfGW456L13_1935 0.69 -2.2 2,126,820 - PfGW456L13_1935 0.69 +0.2 2,126,820 - PfGW456L13_1935 0.69 -1.8 2,126,820 - PfGW456L13_1935 0.69 -1.4 2,126,820 - PfGW456L13_1935 0.69 +0.6 2,126,820 - PfGW456L13_1935 0.69 +0.2 2,126,833 + PfGW456L13_1935 0.70 -1.1 2,126,833 + PfGW456L13_1935 0.70 +0.9 2,126,833 + PfGW456L13_1935 0.70 -0.1 2,126,833 + PfGW456L13_1935 0.70 +0.2 2,126,834 - PfGW456L13_1935 0.70 -0.3 2,126,834 - PfGW456L13_1935 0.70 +0.7 2,126,834 - PfGW456L13_1935 0.70 +1.0 2,127,129 + PfGW456L13_1936 0.16 +1.2 2,127,213 + PfGW456L13_1936 0.35 -1.6 2,127,214 - PfGW456L13_1936 0.36 +0.7
Or see this region's nucleotide sequence