Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1934

Experiment: Aluminum chloride 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1932 and PfGW456L13_1933 are separated by 156 nucleotidesPfGW456L13_1933 and PfGW456L13_1934 are separated by 66 nucleotidesPfGW456L13_1934 and PfGW456L13_1935 are separated by 1 nucleotidesPfGW456L13_1935 and PfGW456L13_1936 overlap by 16 nucleotides PfGW456L13_1932 - Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1), at 2,124,798 to 2,125,268 _1932 PfGW456L13_1933 - Ketosteroid isomerase homolog, at 2,125,425 to 2,125,850 _1933 PfGW456L13_1934 - DGPFAETKE, at 2,125,917 to 2,126,261 _1934 PfGW456L13_1935 - RNA polymerase sigma-70 factor, ECF subfamily, at 2,126,263 to 2,127,072 _1935 PfGW456L13_1936 - RNA polymerase sigma-70 factor, ECF subfamily, at 2,127,057 to 2,127,497 _1936 Position (kb) 2125 2126 2127Strain fitness (log2 ratio) -2 -1 0 1 2at 2125.261 kb on + strandat 2125.262 kb on - strandat 2125.262 kb on - strandat 2125.351 kb on + strandat 2125.387 kb on + strandat 2125.388 kb on - strandat 2125.402 kb on + strandat 2125.402 kb on + strandat 2125.402 kb on + strandat 2125.403 kb on - strandat 2125.404 kb on + strandat 2125.404 kb on + strandat 2125.404 kb on + strandat 2125.404 kb on + strandat 2125.405 kb on - strandat 2125.405 kb on - strandat 2125.464 kb on + strandat 2125.464 kb on + strandat 2125.465 kb on - strandat 2125.465 kb on - strandat 2125.832 kb on - strandat 2125.889 kb on + strandat 2125.889 kb on + strandat 2125.889 kb on + strandat 2125.890 kb on - strandat 2125.890 kb on - strandat 2125.890 kb on - strandat 2125.890 kb on - strandat 2125.890 kb on - strandat 2125.923 kb on + strandat 2125.923 kb on + strandat 2125.923 kb on + strandat 2125.923 kb on + strandat 2125.923 kb on + strandat 2125.923 kb on + strandat 2125.923 kb on + strandat 2125.923 kb on + strandat 2125.923 kb on + strandat 2125.923 kb on + strandat 2125.923 kb on + strandat 2125.924 kb on - strandat 2125.924 kb on - strandat 2125.924 kb on - strandat 2125.924 kb on - strandat 2125.924 kb on - strandat 2125.924 kb on - strandat 2125.924 kb on - strandat 2125.927 kb on + strandat 2125.927 kb on + strandat 2125.927 kb on + strandat 2125.927 kb on + strandat 2125.928 kb on - strandat 2125.928 kb on - strandat 2125.928 kb on - strandat 2125.928 kb on - strandat 2125.928 kb on - strandat 2125.928 kb on - strandat 2125.938 kb on + strandat 2125.938 kb on + strandat 2125.939 kb on - strandat 2125.939 kb on - strandat 2126.001 kb on + strand, within PfGW456L13_1934at 2126.001 kb on + strand, within PfGW456L13_1934at 2126.001 kb on + strand, within PfGW456L13_1934at 2126.259 kb on + strandat 2126.259 kb on + strandat 2126.260 kb on - strandat 2126.819 kb on + strand, within PfGW456L13_1935at 2126.819 kb on + strand, within PfGW456L13_1935at 2126.819 kb on + strand, within PfGW456L13_1935at 2126.819 kb on + strand, within PfGW456L13_1935at 2126.819 kb on + strand, within PfGW456L13_1935at 2126.819 kb on + strand, within PfGW456L13_1935at 2126.819 kb on + strand, within PfGW456L13_1935at 2126.819 kb on + strand, within PfGW456L13_1935at 2126.820 kb on - strand, within PfGW456L13_1935at 2126.820 kb on - strand, within PfGW456L13_1935at 2126.820 kb on - strand, within PfGW456L13_1935at 2126.820 kb on - strand, within PfGW456L13_1935at 2126.820 kb on - strand, within PfGW456L13_1935at 2126.833 kb on + strand, within PfGW456L13_1935at 2126.833 kb on + strand, within PfGW456L13_1935at 2126.833 kb on + strand, within PfGW456L13_1935at 2126.833 kb on + strand, within PfGW456L13_1935at 2126.834 kb on - strand, within PfGW456L13_1935at 2126.834 kb on - strand, within PfGW456L13_1935at 2126.834 kb on - strand, within PfGW456L13_1935at 2127.129 kb on + strand, within PfGW456L13_1936at 2127.213 kb on + strand, within PfGW456L13_1936at 2127.214 kb on - strand, within PfGW456L13_1936

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 5 mM
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2,125,261 + +0.6
2,125,262 - -1.2
2,125,262 - +1.2
2,125,351 + +0.6
2,125,387 + +0.7
2,125,388 - -0.2
2,125,402 + +1.5
2,125,402 + +0.1
2,125,402 + +0.0
2,125,403 - -0.8
2,125,404 + -0.2
2,125,404 + +1.2
2,125,404 + +1.2
2,125,404 + -1.2
2,125,405 - +0.5
2,125,405 - -1.1
2,125,464 + +1.3
2,125,464 + -2.2
2,125,465 - -0.4
2,125,465 - -0.7
2,125,832 - +0.3
2,125,889 + -1.0
2,125,889 + -0.8
2,125,889 + +1.2
2,125,890 - +1.4
2,125,890 - -0.8
2,125,890 - +0.2
2,125,890 - -0.4
2,125,890 - +1.2
2,125,923 + -0.1
2,125,923 + -1.0
2,125,923 + -0.3
2,125,923 + +0.8
2,125,923 + +0.1
2,125,923 + +0.2
2,125,923 + +1.3
2,125,923 + -1.3
2,125,923 + -2.5
2,125,923 + -0.5
2,125,923 + +0.8
2,125,924 - +0.8
2,125,924 - -0.0
2,125,924 - -0.5
2,125,924 - -2.2
2,125,924 - -2.2
2,125,924 - +0.2
2,125,924 - -0.3
2,125,927 + -0.7
2,125,927 + +0.9
2,125,927 + -0.6
2,125,927 + +1.0
2,125,928 - +1.1
2,125,928 - +0.2
2,125,928 - +0.1
2,125,928 - +1.7
2,125,928 - -0.6
2,125,928 - +0.5
2,125,938 + -0.9
2,125,938 + -0.8
2,125,939 - +1.3
2,125,939 - -0.8
2,126,001 + PfGW456L13_1934 0.24 +0.0
2,126,001 + PfGW456L13_1934 0.24 -0.5
2,126,001 + PfGW456L13_1934 0.24 -1.3
2,126,259 + -0.7
2,126,259 + +0.8
2,126,260 - +0.9
2,126,819 + PfGW456L13_1935 0.69 -0.1
2,126,819 + PfGW456L13_1935 0.69 +0.2
2,126,819 + PfGW456L13_1935 0.69 +1.0
2,126,819 + PfGW456L13_1935 0.69 +0.6
2,126,819 + PfGW456L13_1935 0.69 +0.3
2,126,819 + PfGW456L13_1935 0.69 -0.4
2,126,819 + PfGW456L13_1935 0.69 +1.8
2,126,819 + PfGW456L13_1935 0.69 -2.2
2,126,820 - PfGW456L13_1935 0.69 +0.2
2,126,820 - PfGW456L13_1935 0.69 -1.8
2,126,820 - PfGW456L13_1935 0.69 -1.4
2,126,820 - PfGW456L13_1935 0.69 +0.6
2,126,820 - PfGW456L13_1935 0.69 +0.2
2,126,833 + PfGW456L13_1935 0.70 -1.1
2,126,833 + PfGW456L13_1935 0.70 +0.9
2,126,833 + PfGW456L13_1935 0.70 -0.1
2,126,833 + PfGW456L13_1935 0.70 +0.2
2,126,834 - PfGW456L13_1935 0.70 -0.3
2,126,834 - PfGW456L13_1935 0.70 +0.7
2,126,834 - PfGW456L13_1935 0.70 +1.0
2,127,129 + PfGW456L13_1936 0.16 +1.2
2,127,213 + PfGW456L13_1936 0.35 -1.6
2,127,214 - PfGW456L13_1936 0.36 +0.7

Or see this region's nucleotide sequence