Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1770

Experiment: Aluminum chloride 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_1768 and PfGW456L13_1769 are separated by 151 nucleotidesPfGW456L13_1769 and PfGW456L13_1770 are separated by 4 nucleotidesPfGW456L13_1770 and PfGW456L13_1771 are separated by 340 nucleotides PfGW456L13_1768 - two-component system sensor protein, at 1,943,997 to 1,945,271 _1768 PfGW456L13_1769 - SAM-dependent methyltransferases, at 1,945,423 to 1,946,094 _1769 PfGW456L13_1770 - InaA protein, at 1,946,099 to 1,946,812 _1770 PfGW456L13_1771 - RND multidrug efflux transporter; Acriflavin resistance protein, at 1,947,153 to 1,950,179 _1771 Position (kb) 1946 1947Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1945.221 kb on - strandat 1945.277 kb on + strandat 1945.277 kb on + strandat 1945.278 kb on - strandat 1945.278 kb on - strandat 1945.278 kb on - strandat 1945.278 kb on - strandat 1945.278 kb on - strandat 1945.324 kb on + strandat 1945.325 kb on - strandat 1945.325 kb on - strandat 1945.347 kb on + strandat 1945.348 kb on - strandat 1945.380 kb on + strandat 1945.380 kb on + strandat 1945.381 kb on - strandat 1945.389 kb on + strandat 1945.389 kb on + strandat 1945.390 kb on - strandat 1945.394 kb on + strandat 1945.394 kb on + strandat 1945.395 kb on - strandat 1945.395 kb on - strandat 1945.395 kb on - strandat 1945.395 kb on - strandat 1945.463 kb on - strandat 1945.486 kb on + strandat 1945.751 kb on + strand, within PfGW456L13_1769at 1945.751 kb on + strand, within PfGW456L13_1769at 1945.751 kb on + strand, within PfGW456L13_1769at 1945.843 kb on - strand, within PfGW456L13_1769at 1945.960 kb on + strand, within PfGW456L13_1769at 1945.989 kb on + strand, within PfGW456L13_1769at 1946.056 kb on + strandat 1946.056 kb on + strandat 1946.056 kb on + strandat 1946.057 kb on - strandat 1946.057 kb on - strandat 1946.057 kb on - strandat 1946.057 kb on - strandat 1946.074 kb on + strandat 1946.074 kb on + strandat 1946.075 kb on - strandat 1946.075 kb on - strandat 1946.075 kb on - strandat 1946.075 kb on - strandat 1946.078 kb on + strandat 1946.078 kb on + strandat 1946.078 kb on + strandat 1946.078 kb on + strandat 1946.078 kb on + strandat 1946.079 kb on - strandat 1946.079 kb on - strandat 1946.079 kb on - strandat 1946.079 kb on - strandat 1946.079 kb on - strandat 1946.081 kb on + strandat 1946.082 kb on - strandat 1946.082 kb on - strandat 1946.092 kb on + strandat 1946.093 kb on - strandat 1946.093 kb on - strandat 1946.154 kb on - strandat 1946.181 kb on + strand, within PfGW456L13_1770at 1946.181 kb on + strand, within PfGW456L13_1770at 1946.181 kb on + strand, within PfGW456L13_1770at 1946.182 kb on - strand, within PfGW456L13_1770at 1946.255 kb on + strand, within PfGW456L13_1770at 1946.255 kb on + strand, within PfGW456L13_1770at 1946.279 kb on - strand, within PfGW456L13_1770at 1946.287 kb on + strand, within PfGW456L13_1770at 1946.287 kb on + strand, within PfGW456L13_1770at 1946.288 kb on - strand, within PfGW456L13_1770at 1946.511 kb on + strand, within PfGW456L13_1770at 1946.512 kb on - strand, within PfGW456L13_1770at 1946.584 kb on + strand, within PfGW456L13_1770at 1946.584 kb on + strand, within PfGW456L13_1770at 1946.584 kb on + strand, within PfGW456L13_1770at 1946.584 kb on + strand, within PfGW456L13_1770at 1946.584 kb on + strand, within PfGW456L13_1770at 1946.584 kb on + strand, within PfGW456L13_1770at 1946.584 kb on + strand, within PfGW456L13_1770at 1946.585 kb on - strand, within PfGW456L13_1770at 1946.585 kb on - strand, within PfGW456L13_1770at 1946.585 kb on - strand, within PfGW456L13_1770at 1946.585 kb on - strand, within PfGW456L13_1770at 1946.585 kb on - strand, within PfGW456L13_1770at 1946.585 kb on - strand, within PfGW456L13_1770at 1946.585 kb on - strand, within PfGW456L13_1770at 1946.588 kb on + strand, within PfGW456L13_1770at 1946.589 kb on - strand, within PfGW456L13_1770at 1946.589 kb on - strand, within PfGW456L13_1770at 1946.601 kb on + strand, within PfGW456L13_1770at 1946.601 kb on + strand, within PfGW456L13_1770at 1946.602 kb on - strand, within PfGW456L13_1770at 1946.602 kb on - strand, within PfGW456L13_1770at 1946.602 kb on - strand, within PfGW456L13_1770at 1946.768 kb on + strandat 1946.768 kb on + strandat 1946.775 kb on - strandat 1946.808 kb on + strandat 1946.809 kb on - strandat 1946.809 kb on - strandat 1946.849 kb on + strandat 1946.922 kb on - strandat 1947.091 kb on - strandat 1947.143 kb on + strandat 1947.143 kb on + strandat 1947.143 kb on + strandat 1947.143 kb on + strandat 1947.143 kb on + strandat 1947.143 kb on + strandat 1947.143 kb on + strandat 1947.143 kb on + strandat 1947.143 kb on + strandat 1947.143 kb on + strandat 1947.143 kb on + strandat 1947.143 kb on + strandat 1947.143 kb on + strandat 1947.143 kb on + strandat 1947.143 kb on + strandat 1947.144 kb on - strandat 1947.144 kb on - strandat 1947.144 kb on - strandat 1947.144 kb on - strandat 1947.144 kb on - strandat 1947.144 kb on - strandat 1947.144 kb on - strandat 1947.144 kb on - strandat 1947.184 kb on + strandat 1947.185 kb on - strandat 1947.218 kb on + strandat 1947.219 kb on - strandat 1947.230 kb on + strandat 1947.231 kb on - strandat 1947.231 kb on - strandat 1947.231 kb on - strandat 1947.405 kb on + strandat 1947.405 kb on + strandat 1947.406 kb on - strandat 1947.484 kb on + strand, within PfGW456L13_1771at 1947.484 kb on + strand, within PfGW456L13_1771at 1947.484 kb on + strand, within PfGW456L13_1771at 1947.484 kb on + strand, within PfGW456L13_1771at 1947.484 kb on + strand, within PfGW456L13_1771at 1947.484 kb on + strand, within PfGW456L13_1771at 1947.484 kb on + strand, within PfGW456L13_1771at 1947.484 kb on + strand, within PfGW456L13_1771at 1947.484 kb on + strand, within PfGW456L13_1771at 1947.484 kb on + strand, within PfGW456L13_1771at 1947.484 kb on + strand, within PfGW456L13_1771at 1947.484 kb on + strand, within PfGW456L13_1771at 1947.484 kb on + strand, within PfGW456L13_1771at 1947.484 kb on + strand, within PfGW456L13_1771at 1947.485 kb on - strand, within PfGW456L13_1771at 1947.485 kb on - strand, within PfGW456L13_1771at 1947.485 kb on - strand, within PfGW456L13_1771at 1947.485 kb on - strand, within PfGW456L13_1771at 1947.485 kb on - strand, within PfGW456L13_1771at 1947.485 kb on - strand, within PfGW456L13_1771at 1947.485 kb on - strand, within PfGW456L13_1771at 1947.485 kb on - strand, within PfGW456L13_1771at 1947.485 kb on - strand, within PfGW456L13_1771at 1947.485 kb on - strand, within PfGW456L13_1771at 1947.485 kb on - strand, within PfGW456L13_1771at 1947.485 kb on - strand, within PfGW456L13_1771at 1947.485 kb on - strand, within PfGW456L13_1771at 1947.485 kb on - strand, within PfGW456L13_1771at 1947.485 kb on - strand, within PfGW456L13_1771at 1947.485 kb on - strand, within PfGW456L13_1771at 1947.536 kb on + strand, within PfGW456L13_1771at 1947.664 kb on + strand, within PfGW456L13_1771at 1947.665 kb on - strand, within PfGW456L13_1771at 1947.665 kb on - strand, within PfGW456L13_1771at 1947.665 kb on - strand, within PfGW456L13_1771at 1947.685 kb on + strand, within PfGW456L13_1771at 1947.685 kb on + strand, within PfGW456L13_1771at 1947.686 kb on - strand, within PfGW456L13_1771at 1947.686 kb on - strand, within PfGW456L13_1771

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 5 mM
remove
1,945,221 - -1.7
1,945,277 + -1.4
1,945,277 + +1.9
1,945,278 - +0.0
1,945,278 - -1.1
1,945,278 - -1.7
1,945,278 - -2.3
1,945,278 - -1.5
1,945,324 + +0.3
1,945,325 - -1.4
1,945,325 - -2.1
1,945,347 + +0.4
1,945,348 - -1.5
1,945,380 + -0.5
1,945,380 + -1.8
1,945,381 - +0.8
1,945,389 + -1.2
1,945,389 + -1.5
1,945,390 - -2.4
1,945,394 + -1.5
1,945,394 + -0.5
1,945,395 - -0.7
1,945,395 - -2.1
1,945,395 - -0.3
1,945,395 - -1.4
1,945,463 - -2.1
1,945,486 + -0.7
1,945,751 + PfGW456L13_1769 0.49 -1.3
1,945,751 + PfGW456L13_1769 0.49 +0.6
1,945,751 + PfGW456L13_1769 0.49 -1.2
1,945,843 - PfGW456L13_1769 0.62 -1.3
1,945,960 + PfGW456L13_1769 0.80 -0.6
1,945,989 + PfGW456L13_1769 0.84 -3.3
1,946,056 + +0.1
1,946,056 + -0.1
1,946,056 + -0.4
1,946,057 - -0.8
1,946,057 - +0.5
1,946,057 - -1.7
1,946,057 - -2.4
1,946,074 + -2.1
1,946,074 + -2.1
1,946,075 - -0.1
1,946,075 - -0.9
1,946,075 - -1.4
1,946,075 - -3.4
1,946,078 + -4.0
1,946,078 + -1.5
1,946,078 + -1.3
1,946,078 + -1.6
1,946,078 + -0.6
1,946,079 - -2.2
1,946,079 - -1.8
1,946,079 - -1.7
1,946,079 - -3.6
1,946,079 - +1.3
1,946,081 + -0.8
1,946,082 - -0.9
1,946,082 - -2.1
1,946,092 + -2.7
1,946,093 - -1.1
1,946,093 - -2.3
1,946,154 - -2.2
1,946,181 + PfGW456L13_1770 0.11 -1.9
1,946,181 + PfGW456L13_1770 0.11 -1.8
1,946,181 + PfGW456L13_1770 0.11 -2.2
1,946,182 - PfGW456L13_1770 0.12 -2.4
1,946,255 + PfGW456L13_1770 0.22 +0.0
1,946,255 + PfGW456L13_1770 0.22 -3.6
1,946,279 - PfGW456L13_1770 0.25 -2.2
1,946,287 + PfGW456L13_1770 0.26 -0.8
1,946,287 + PfGW456L13_1770 0.26 -0.3
1,946,288 - PfGW456L13_1770 0.26 -1.8
1,946,511 + PfGW456L13_1770 0.58 -0.7
1,946,512 - PfGW456L13_1770 0.58 -0.8
1,946,584 + PfGW456L13_1770 0.68 -1.1
1,946,584 + PfGW456L13_1770 0.68 -1.8
1,946,584 + PfGW456L13_1770 0.68 -0.3
1,946,584 + PfGW456L13_1770 0.68 -2.2
1,946,584 + PfGW456L13_1770 0.68 -0.8
1,946,584 + PfGW456L13_1770 0.68 -1.7
1,946,584 + PfGW456L13_1770 0.68 -1.7
1,946,585 - PfGW456L13_1770 0.68 -1.5
1,946,585 - PfGW456L13_1770 0.68 -0.7
1,946,585 - PfGW456L13_1770 0.68 -1.8
1,946,585 - PfGW456L13_1770 0.68 -2.6
1,946,585 - PfGW456L13_1770 0.68 -2.9
1,946,585 - PfGW456L13_1770 0.68 -1.6
1,946,585 - PfGW456L13_1770 0.68 -1.1
1,946,588 + PfGW456L13_1770 0.68 -0.7
1,946,589 - PfGW456L13_1770 0.69 -2.6
1,946,589 - PfGW456L13_1770 0.69 -1.6
1,946,601 + PfGW456L13_1770 0.70 +0.0
1,946,601 + PfGW456L13_1770 0.70 -3.3
1,946,602 - PfGW456L13_1770 0.70 -2.1
1,946,602 - PfGW456L13_1770 0.70 -0.8
1,946,602 - PfGW456L13_1770 0.70 -4.2
1,946,768 + -2.7
1,946,768 + -2.1
1,946,775 - -1.6
1,946,808 + +0.6
1,946,809 - +0.9
1,946,809 - -1.7
1,946,849 + +0.5
1,946,922 - -1.1
1,947,091 - -0.7
1,947,143 + +1.0
1,947,143 + +0.9
1,947,143 + +0.3
1,947,143 + -0.5
1,947,143 + +0.4
1,947,143 + -0.6
1,947,143 + +0.3
1,947,143 + -1.6
1,947,143 + -1.6
1,947,143 + +2.6
1,947,143 + -0.3
1,947,143 + +1.5
1,947,143 + -0.4
1,947,143 + +1.4
1,947,143 + -0.5
1,947,144 - +0.6
1,947,144 - -0.4
1,947,144 - -1.1
1,947,144 - -2.5
1,947,144 - -2.9
1,947,144 - -1.1
1,947,144 - -0.2
1,947,144 - -0.1
1,947,184 + -0.1
1,947,185 - -0.0
1,947,218 + +1.6
1,947,219 - -1.4
1,947,230 + +0.7
1,947,231 - +0.2
1,947,231 - -0.1
1,947,231 - -1.2
1,947,405 + -0.5
1,947,405 + -1.1
1,947,406 - -1.2
1,947,484 + PfGW456L13_1771 0.11 +1.0
1,947,484 + PfGW456L13_1771 0.11 -0.7
1,947,484 + PfGW456L13_1771 0.11 +0.6
1,947,484 + PfGW456L13_1771 0.11 -2.3
1,947,484 + PfGW456L13_1771 0.11 +0.2
1,947,484 + PfGW456L13_1771 0.11 -0.8
1,947,484 + PfGW456L13_1771 0.11 -0.7
1,947,484 + PfGW456L13_1771 0.11 +0.9
1,947,484 + PfGW456L13_1771 0.11 -0.8
1,947,484 + PfGW456L13_1771 0.11 +0.9
1,947,484 + PfGW456L13_1771 0.11 -2.0
1,947,484 + PfGW456L13_1771 0.11 +0.2
1,947,484 + PfGW456L13_1771 0.11 -0.7
1,947,484 + PfGW456L13_1771 0.11 -0.9
1,947,485 - PfGW456L13_1771 0.11 -1.3
1,947,485 - PfGW456L13_1771 0.11 -1.5
1,947,485 - PfGW456L13_1771 0.11 -1.2
1,947,485 - PfGW456L13_1771 0.11 -0.7
1,947,485 - PfGW456L13_1771 0.11 -0.1
1,947,485 - PfGW456L13_1771 0.11 -2.1
1,947,485 - PfGW456L13_1771 0.11 -1.1
1,947,485 - PfGW456L13_1771 0.11 -0.7
1,947,485 - PfGW456L13_1771 0.11 -1.6
1,947,485 - PfGW456L13_1771 0.11 -0.2
1,947,485 - PfGW456L13_1771 0.11 -1.5
1,947,485 - PfGW456L13_1771 0.11 -1.5
1,947,485 - PfGW456L13_1771 0.11 +0.2
1,947,485 - PfGW456L13_1771 0.11 -0.4
1,947,485 - PfGW456L13_1771 0.11 -0.3
1,947,485 - PfGW456L13_1771 0.11 +0.5
1,947,536 + PfGW456L13_1771 0.13 -1.0
1,947,664 + PfGW456L13_1771 0.17 -1.5
1,947,665 - PfGW456L13_1771 0.17 -1.1
1,947,665 - PfGW456L13_1771 0.17 -0.1
1,947,665 - PfGW456L13_1771 0.17 -0.4
1,947,685 + PfGW456L13_1771 0.18 -1.4
1,947,685 + PfGW456L13_1771 0.18 -2.3
1,947,686 - PfGW456L13_1771 0.18 -0.8
1,947,686 - PfGW456L13_1771 0.18 -2.5

Or see this region's nucleotide sequence