Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1764

Experiment: Aluminum chloride 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1762 and PfGW456L13_1763 are separated by 66 nucleotidesPfGW456L13_1763 and PfGW456L13_1764 are separated by 248 nucleotidesPfGW456L13_1764 and PfGW456L13_1765 are separated by 50 nucleotides PfGW456L13_1762 - Putative heme iron utilization protein, at 1,938,732 to 1,939,406 _1762 PfGW456L13_1763 - FxsA protein, at 1,939,473 to 1,939,949 _1763 PfGW456L13_1764 - Heat shock protein 60 family co-chaperone GroES, at 1,940,198 to 1,940,491 _1764 PfGW456L13_1765 - Heat shock protein 60 family chaperone GroEL, at 1,940,542 to 1,942,188 _1765 Position (kb) 1940 1941Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1939.203 kb on + strand, within PfGW456L13_1762at 1939.203 kb on + strand, within PfGW456L13_1762at 1939.204 kb on - strand, within PfGW456L13_1762at 1939.297 kb on - strand, within PfGW456L13_1762at 1939.297 kb on - strand, within PfGW456L13_1762at 1939.303 kb on + strand, within PfGW456L13_1762at 1939.322 kb on + strand, within PfGW456L13_1762at 1939.323 kb on - strand, within PfGW456L13_1762at 1939.325 kb on + strand, within PfGW456L13_1762at 1939.325 kb on + strand, within PfGW456L13_1762at 1939.430 kb on + strandat 1939.430 kb on + strandat 1939.430 kb on + strandat 1939.430 kb on + strandat 1939.430 kb on + strandat 1939.430 kb on + strandat 1939.430 kb on + strandat 1939.430 kb on + strandat 1939.430 kb on + strandat 1939.430 kb on + strandat 1939.430 kb on + strandat 1939.431 kb on - strandat 1939.431 kb on - strandat 1939.525 kb on + strand, within PfGW456L13_1763at 1939.525 kb on + strand, within PfGW456L13_1763at 1939.526 kb on - strand, within PfGW456L13_1763at 1939.526 kb on - strand, within PfGW456L13_1763at 1939.858 kb on + strand, within PfGW456L13_1763at 1939.858 kb on + strand, within PfGW456L13_1763at 1939.858 kb on + strand, within PfGW456L13_1763at 1939.859 kb on - strand, within PfGW456L13_1763at 1939.859 kb on - strand, within PfGW456L13_1763at 1939.859 kb on - strand, within PfGW456L13_1763at 1939.859 kb on - strand, within PfGW456L13_1763at 1939.947 kb on + strandat 1939.947 kb on + strandat 1939.947 kb on + strandat 1939.947 kb on + strandat 1939.947 kb on + strandat 1939.947 kb on + strandat 1939.947 kb on + strandat 1939.948 kb on - strandat 1939.948 kb on - strandat 1939.948 kb on - strandat 1939.948 kb on - strandat 1939.948 kb on - strandat 1939.950 kb on + strandat 1939.950 kb on + strandat 1939.950 kb on + strandat 1939.950 kb on + strandat 1939.951 kb on - strandat 1940.031 kb on + strandat 1940.031 kb on + strandat 1940.031 kb on + strandat 1940.031 kb on + strandat 1940.031 kb on + strandat 1940.031 kb on + strandat 1940.031 kb on + strandat 1940.031 kb on + strandat 1940.031 kb on + strandat 1940.034 kb on + strandat 1940.034 kb on + strandat 1940.040 kb on + strandat 1940.040 kb on + strandat 1940.040 kb on + strandat 1940.050 kb on + strandat 1940.050 kb on + strandat 1940.050 kb on + strandat 1940.050 kb on + strandat 1940.050 kb on + strandat 1940.050 kb on + strandat 1940.054 kb on + strandat 1940.054 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 5 mM
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1,939,203 + PfGW456L13_1762 0.70 -0.4
1,939,203 + PfGW456L13_1762 0.70 +1.1
1,939,204 - PfGW456L13_1762 0.70 -0.3
1,939,297 - PfGW456L13_1762 0.84 +0.3
1,939,297 - PfGW456L13_1762 0.84 -1.0
1,939,303 + PfGW456L13_1762 0.85 +0.6
1,939,322 + PfGW456L13_1762 0.87 +0.1
1,939,323 - PfGW456L13_1762 0.88 +0.8
1,939,325 + PfGW456L13_1762 0.88 -0.4
1,939,325 + PfGW456L13_1762 0.88 -0.1
1,939,430 + -0.2
1,939,430 + +0.9
1,939,430 + -1.0
1,939,430 + -0.9
1,939,430 + -0.5
1,939,430 + +0.6
1,939,430 + +0.3
1,939,430 + +0.3
1,939,430 + -1.1
1,939,430 + -0.2
1,939,430 + -0.2
1,939,431 - -1.0
1,939,431 - +1.3
1,939,525 + PfGW456L13_1763 0.11 -2.0
1,939,525 + PfGW456L13_1763 0.11 -1.5
1,939,526 - PfGW456L13_1763 0.11 -2.0
1,939,526 - PfGW456L13_1763 0.11 -1.0
1,939,858 + PfGW456L13_1763 0.81 -0.7
1,939,858 + PfGW456L13_1763 0.81 -3.2
1,939,858 + PfGW456L13_1763 0.81 -2.8
1,939,859 - PfGW456L13_1763 0.81 -0.6
1,939,859 - PfGW456L13_1763 0.81 -0.5
1,939,859 - PfGW456L13_1763 0.81 -2.7
1,939,859 - PfGW456L13_1763 0.81 -0.4
1,939,947 + -0.3
1,939,947 + +0.6
1,939,947 + +1.3
1,939,947 + -0.0
1,939,947 + +0.2
1,939,947 + -0.8
1,939,947 + +0.7
1,939,948 - +1.3
1,939,948 - -2.3
1,939,948 - +2.4
1,939,948 - -1.3
1,939,948 - +0.9
1,939,950 + -0.3
1,939,950 + -1.2
1,939,950 + -0.7
1,939,950 + -1.5
1,939,951 - +0.5
1,940,031 + +0.7
1,940,031 + +1.3
1,940,031 + -0.7
1,940,031 + -2.8
1,940,031 + -3.4
1,940,031 + -0.6
1,940,031 + -0.1
1,940,031 + -0.1
1,940,031 + +0.4
1,940,034 + -0.9
1,940,034 + -1.3
1,940,040 + -0.6
1,940,040 + +0.3
1,940,040 + +0.5
1,940,050 + +0.3
1,940,050 + +1.2
1,940,050 + +0.1
1,940,050 + +0.4
1,940,050 + +0.5
1,940,050 + -2.1
1,940,054 + -1.3
1,940,054 + +0.4

Or see this region's nucleotide sequence