Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1481

Experiment: Aluminum chloride 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1480 and PfGW456L13_1481 overlap by 32 nucleotidesPfGW456L13_1481 and PfGW456L13_1482 are separated by 130 nucleotidesPfGW456L13_1482 and PfGW456L13_1483 are separated by 29 nucleotides PfGW456L13_1480 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2), at 1,633,523 to 1,634,470 _1480 PfGW456L13_1481 - Type IV fimbrial biogenesis protein FimT, at 1,634,439 to 1,634,978 _1481 PfGW456L13_1482 - type 4 fimbrial biogenesis protein FimU, at 1,635,109 to 1,635,582 _1482 PfGW456L13_1483 - Type IV fimbrial biogenesis protein PilV, at 1,635,612 to 1,636,028 _1483 Position (kb) 1634 1635Strain fitness (log2 ratio) -2 -1 0 1 2at 1634.587 kb on + strand, within PfGW456L13_1481at 1634.587 kb on + strand, within PfGW456L13_1481at 1634.587 kb on + strand, within PfGW456L13_1481at 1634.587 kb on + strand, within PfGW456L13_1481at 1634.587 kb on + strand, within PfGW456L13_1481at 1634.587 kb on + strand, within PfGW456L13_1481at 1634.588 kb on - strand, within PfGW456L13_1481at 1634.588 kb on - strand, within PfGW456L13_1481at 1634.588 kb on - strand, within PfGW456L13_1481at 1634.588 kb on - strand, within PfGW456L13_1481at 1634.588 kb on - strand, within PfGW456L13_1481at 1634.588 kb on - strand, within PfGW456L13_1481at 1634.588 kb on - strand, within PfGW456L13_1481at 1634.589 kb on + strand, within PfGW456L13_1481at 1634.590 kb on - strand, within PfGW456L13_1481at 1634.590 kb on - strand, within PfGW456L13_1481at 1634.590 kb on - strand, within PfGW456L13_1481at 1634.631 kb on + strand, within PfGW456L13_1481at 1634.631 kb on + strand, within PfGW456L13_1481at 1634.631 kb on + strand, within PfGW456L13_1481at 1634.835 kb on - strand, within PfGW456L13_1481at 1634.835 kb on - strand, within PfGW456L13_1481at 1634.927 kb on + strandat 1634.928 kb on - strandat 1634.967 kb on + strandat 1634.968 kb on - strandat 1634.968 kb on - strandat 1634.968 kb on - strandat 1634.968 kb on - strandat 1634.968 kb on - strandat 1634.968 kb on - strandat 1635.082 kb on + strandat 1635.082 kb on + strandat 1635.082 kb on + strandat 1635.082 kb on + strandat 1635.082 kb on + strandat 1635.082 kb on + strandat 1635.082 kb on + strandat 1635.082 kb on + strandat 1635.082 kb on + strandat 1635.082 kb on + strandat 1635.083 kb on - strandat 1635.083 kb on - strandat 1635.083 kb on - strandat 1635.083 kb on - strandat 1635.083 kb on - strandat 1635.083 kb on - strandat 1635.083 kb on - strandat 1635.084 kb on + strandat 1635.084 kb on + strandat 1635.084 kb on + strandat 1635.085 kb on - strandat 1635.120 kb on + strandat 1635.120 kb on + strandat 1635.120 kb on + strandat 1635.121 kb on - strandat 1635.121 kb on - strandat 1635.121 kb on - strandat 1635.121 kb on - strandat 1635.121 kb on - strandat 1635.355 kb on + strand, within PfGW456L13_1482at 1635.363 kb on + strand, within PfGW456L13_1482at 1635.383 kb on + strand, within PfGW456L13_1482at 1635.383 kb on + strand, within PfGW456L13_1482at 1635.383 kb on + strand, within PfGW456L13_1482at 1635.383 kb on + strand, within PfGW456L13_1482at 1635.383 kb on + strand, within PfGW456L13_1482at 1635.383 kb on + strand, within PfGW456L13_1482at 1635.384 kb on - strand, within PfGW456L13_1482at 1635.384 kb on - strand, within PfGW456L13_1482at 1635.506 kb on - strand, within PfGW456L13_1482at 1635.506 kb on - strand, within PfGW456L13_1482at 1635.560 kb on + strandat 1635.560 kb on + strandat 1635.561 kb on - strandat 1635.700 kb on - strand, within PfGW456L13_1483at 1635.700 kb on - strand, within PfGW456L13_1483at 1635.717 kb on - strand, within PfGW456L13_1483at 1635.745 kb on - strand, within PfGW456L13_1483at 1635.786 kb on + strand, within PfGW456L13_1483at 1635.787 kb on - strand, within PfGW456L13_1483at 1635.787 kb on - strand, within PfGW456L13_1483at 1635.787 kb on - strand, within PfGW456L13_1483at 1635.918 kb on + strand, within PfGW456L13_1483at 1635.918 kb on + strand, within PfGW456L13_1483at 1635.918 kb on + strand, within PfGW456L13_1483at 1635.918 kb on + strand, within PfGW456L13_1483at 1635.918 kb on + strandat 1635.918 kb on + strand, within PfGW456L13_1483at 1635.919 kb on - strand, within PfGW456L13_1483at 1635.919 kb on - strand, within PfGW456L13_1483at 1635.919 kb on - strand, within PfGW456L13_1483at 1635.919 kb on - strand, within PfGW456L13_1483at 1635.919 kb on - strand, within PfGW456L13_1483at 1635.919 kb on - strand, within PfGW456L13_1483at 1635.919 kb on - strand, within PfGW456L13_1483at 1635.919 kb on - strand, within PfGW456L13_1483at 1635.919 kb on - strand, within PfGW456L13_1483at 1635.929 kb on + strand, within PfGW456L13_1483at 1635.929 kb on + strand, within PfGW456L13_1483at 1635.929 kb on + strand, within PfGW456L13_1483at 1635.929 kb on + strand, within PfGW456L13_1483at 1635.929 kb on + strand, within PfGW456L13_1483at 1635.930 kb on - strand, within PfGW456L13_1483at 1635.930 kb on - strand, within PfGW456L13_1483at 1635.930 kb on - strand, within PfGW456L13_1483at 1635.930 kb on - strand, within PfGW456L13_1483at 1635.930 kb on - strand, within PfGW456L13_1483at 1635.930 kb on - strand, within PfGW456L13_1483at 1635.930 kb on - strand, within PfGW456L13_1483at 1635.930 kb on - strand, within PfGW456L13_1483at 1635.932 kb on + strand, within PfGW456L13_1483at 1635.932 kb on + strand, within PfGW456L13_1483at 1635.933 kb on - strand, within PfGW456L13_1483at 1635.959 kb on + strand, within PfGW456L13_1483at 1635.959 kb on + strand, within PfGW456L13_1483

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 5 mM
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1,634,587 + PfGW456L13_1481 0.27 +0.8
1,634,587 + PfGW456L13_1481 0.27 +0.4
1,634,587 + PfGW456L13_1481 0.27 +0.1
1,634,587 + PfGW456L13_1481 0.27 +1.9
1,634,587 + PfGW456L13_1481 0.27 +0.2
1,634,587 + PfGW456L13_1481 0.27 -1.1
1,634,588 - PfGW456L13_1481 0.28 -1.4
1,634,588 - PfGW456L13_1481 0.28 +0.1
1,634,588 - PfGW456L13_1481 0.28 +0.5
1,634,588 - PfGW456L13_1481 0.28 -0.5
1,634,588 - PfGW456L13_1481 0.28 +1.5
1,634,588 - PfGW456L13_1481 0.28 +0.5
1,634,588 - PfGW456L13_1481 0.28 -0.9
1,634,589 + PfGW456L13_1481 0.28 +0.2
1,634,590 - PfGW456L13_1481 0.28 +0.6
1,634,590 - PfGW456L13_1481 0.28 -0.2
1,634,590 - PfGW456L13_1481 0.28 +0.2
1,634,631 + PfGW456L13_1481 0.36 -0.5
1,634,631 + PfGW456L13_1481 0.36 -0.3
1,634,631 + PfGW456L13_1481 0.36 +1.8
1,634,835 - PfGW456L13_1481 0.73 +0.2
1,634,835 - PfGW456L13_1481 0.73 +0.3
1,634,927 + -1.2
1,634,928 - -0.5
1,634,967 + -0.2
1,634,968 - +1.0
1,634,968 - -0.3
1,634,968 - +0.4
1,634,968 - +0.8
1,634,968 - -0.4
1,634,968 - +0.1
1,635,082 + -1.2
1,635,082 + +0.6
1,635,082 + +0.3
1,635,082 + -1.1
1,635,082 + +1.3
1,635,082 + -0.5
1,635,082 + +1.9
1,635,082 + -0.7
1,635,082 + +0.2
1,635,082 + +0.6
1,635,083 - +0.3
1,635,083 - +1.8
1,635,083 - +0.1
1,635,083 - +1.3
1,635,083 - +0.6
1,635,083 - +1.7
1,635,083 - +1.3
1,635,084 + -0.7
1,635,084 + +0.1
1,635,084 + -0.2
1,635,085 - -0.2
1,635,120 + +0.3
1,635,120 + -0.1
1,635,120 + -1.2
1,635,121 - +0.5
1,635,121 - -1.1
1,635,121 - -0.5
1,635,121 - -0.6
1,635,121 - -0.1
1,635,355 + PfGW456L13_1482 0.52 -0.3
1,635,363 + PfGW456L13_1482 0.54 -0.1
1,635,383 + PfGW456L13_1482 0.58 +0.5
1,635,383 + PfGW456L13_1482 0.58 -0.5
1,635,383 + PfGW456L13_1482 0.58 +0.8
1,635,383 + PfGW456L13_1482 0.58 +0.8
1,635,383 + PfGW456L13_1482 0.58 -0.5
1,635,383 + PfGW456L13_1482 0.58 -0.6
1,635,384 - PfGW456L13_1482 0.58 +0.6
1,635,384 - PfGW456L13_1482 0.58 +0.4
1,635,506 - PfGW456L13_1482 0.84 +1.5
1,635,506 - PfGW456L13_1482 0.84 +0.8
1,635,560 + +1.2
1,635,560 + +1.4
1,635,561 - +0.2
1,635,700 - PfGW456L13_1483 0.21 +0.4
1,635,700 - PfGW456L13_1483 0.21 +0.8
1,635,717 - PfGW456L13_1483 0.25 +1.6
1,635,745 - PfGW456L13_1483 0.32 -0.2
1,635,786 + PfGW456L13_1483 0.42 -0.8
1,635,787 - PfGW456L13_1483 0.42 +2.4
1,635,787 - PfGW456L13_1483 0.42 +1.0
1,635,787 - PfGW456L13_1483 0.42 +0.8
1,635,918 + PfGW456L13_1483 0.73 +0.4
1,635,918 + PfGW456L13_1483 0.73 +1.1
1,635,918 + PfGW456L13_1483 0.73 +0.8
1,635,918 + PfGW456L13_1483 0.73 +0.5
1,635,918 + +0.8
1,635,918 + PfGW456L13_1483 0.73 +1.8
1,635,919 - PfGW456L13_1483 0.74 -0.4
1,635,919 - PfGW456L13_1483 0.74 +0.1
1,635,919 - PfGW456L13_1483 0.74 +0.9
1,635,919 - PfGW456L13_1483 0.74 +1.3
1,635,919 - PfGW456L13_1483 0.74 +1.6
1,635,919 - PfGW456L13_1483 0.74 -1.6
1,635,919 - PfGW456L13_1483 0.74 +0.6
1,635,919 - PfGW456L13_1483 0.74 +0.8
1,635,919 - PfGW456L13_1483 0.74 -1.7
1,635,929 + PfGW456L13_1483 0.76 -0.6
1,635,929 + PfGW456L13_1483 0.76 +0.8
1,635,929 + PfGW456L13_1483 0.76 +0.0
1,635,929 + PfGW456L13_1483 0.76 +0.5
1,635,929 + PfGW456L13_1483 0.76 -0.3
1,635,930 - PfGW456L13_1483 0.76 -0.3
1,635,930 - PfGW456L13_1483 0.76 +0.9
1,635,930 - PfGW456L13_1483 0.76 +1.1
1,635,930 - PfGW456L13_1483 0.76 +0.6
1,635,930 - PfGW456L13_1483 0.76 +0.8
1,635,930 - PfGW456L13_1483 0.76 -1.8
1,635,930 - PfGW456L13_1483 0.76 -0.8
1,635,930 - PfGW456L13_1483 0.76 +0.2
1,635,932 + PfGW456L13_1483 0.77 -0.2
1,635,932 + PfGW456L13_1483 0.77 -0.1
1,635,933 - PfGW456L13_1483 0.77 +0.8
1,635,959 + PfGW456L13_1483 0.83 +0.5
1,635,959 + PfGW456L13_1483 0.83 -0.5

Or see this region's nucleotide sequence