Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1202

Experiment: Aluminum chloride 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1200 and PfGW456L13_1201 overlap by 4 nucleotidesPfGW456L13_1201 and PfGW456L13_1202 overlap by 4 nucleotidesPfGW456L13_1202 and PfGW456L13_1203 overlap by 20 nucleotides PfGW456L13_1200 - SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase (EC 2.1.1.182), at 1,338,598 to 1,339,407 _1200 PfGW456L13_1201 - 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262), at 1,339,404 to 1,340,393 _1201 PfGW456L13_1202 - Survival protein SurA precursor (Peptidyl-prolyl cis-trans isomerase SurA) (EC 5.2.1.8), at 1,340,390 to 1,341,706 _1202 PfGW456L13_1203 - Outer membrane protein Imp, required for envelope biogenesis / Organic solvent tolerance protein precursor, at 1,341,687 to 1,344,485 _1203 Position (kb) 1340 1341 1342Strain fitness (log2 ratio) -2 -1 0 1at 1341.748 kb on - strandat 1341.748 kb on - strandat 1341.748 kb on - strandat 1341.748 kb on - strandat 1341.748 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 5 mM
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1,341,748 - +0.2
1,341,748 - -2.5
1,341,748 - -0.8
1,341,748 - -2.1
1,341,748 - -1.9

Or see this region's nucleotide sequence