Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_116

Experiment: Aluminum chloride 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_115 and PfGW456L13_116 are separated by 99 nucleotidesPfGW456L13_116 and PfGW456L13_117 are separated by 218 nucleotides PfGW456L13_115 - Mannose-6-phosphate isomerase (EC 5.3.1.8), at 132,000 to 133,133 _115 PfGW456L13_116 - Cobalt-zinc-cadmium resistance protein, at 133,233 to 134,138 _116 PfGW456L13_117 - Oxidoreductase, short chain dehydrogenase/reductase family, at 134,357 to 135,118 _117 Position (kb) 133 134 135Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 132.318 kb on + strand, within PfGW456L13_115at 132.318 kb on + strand, within PfGW456L13_115at 132.318 kb on + strand, within PfGW456L13_115at 132.318 kb on + strand, within PfGW456L13_115at 132.318 kb on + strand, within PfGW456L13_115at 132.319 kb on - strand, within PfGW456L13_115at 132.319 kb on - strand, within PfGW456L13_115at 132.366 kb on + strand, within PfGW456L13_115at 132.366 kb on + strand, within PfGW456L13_115at 132.366 kb on + strand, within PfGW456L13_115at 132.367 kb on - strand, within PfGW456L13_115at 132.367 kb on - strand, within PfGW456L13_115at 132.367 kb on - strand, within PfGW456L13_115at 132.367 kb on - strand, within PfGW456L13_115at 132.367 kb on - strand, within PfGW456L13_115at 132.402 kb on + strand, within PfGW456L13_115at 132.403 kb on - strand, within PfGW456L13_115at 132.496 kb on - strand, within PfGW456L13_115at 132.496 kb on - strand, within PfGW456L13_115at 132.634 kb on + strand, within PfGW456L13_115at 132.635 kb on - strand, within PfGW456L13_115at 132.744 kb on + strand, within PfGW456L13_115at 132.744 kb on + strand, within PfGW456L13_115at 132.744 kb on + strand, within PfGW456L13_115at 132.744 kb on + strand, within PfGW456L13_115at 132.744 kb on + strand, within PfGW456L13_115at 132.745 kb on - strand, within PfGW456L13_115at 132.745 kb on - strand, within PfGW456L13_115at 132.930 kb on + strand, within PfGW456L13_115at 132.934 kb on + strand, within PfGW456L13_115at 132.934 kb on + strand, within PfGW456L13_115at 132.934 kb on + strand, within PfGW456L13_115at 132.934 kb on + strand, within PfGW456L13_115at 132.973 kb on + strand, within PfGW456L13_115at 132.974 kb on - strand, within PfGW456L13_115at 132.974 kb on - strand, within PfGW456L13_115at 133.026 kb on + strandat 133.027 kb on - strandat 133.027 kb on - strandat 133.086 kb on + strandat 133.086 kb on + strandat 133.086 kb on + strandat 133.122 kb on + strandat 133.123 kb on - strandat 133.123 kb on - strandat 133.178 kb on + strandat 133.178 kb on + strandat 133.178 kb on + strandat 133.178 kb on + strandat 133.178 kb on + strandat 133.178 kb on + strandat 133.178 kb on + strandat 133.178 kb on + strandat 133.178 kb on + strandat 133.179 kb on - strandat 133.179 kb on - strandat 133.179 kb on - strandat 133.179 kb on - strandat 133.179 kb on - strandat 133.179 kb on - strandat 133.179 kb on - strandat 133.357 kb on + strand, within PfGW456L13_116at 133.358 kb on - strand, within PfGW456L13_116at 133.371 kb on + strand, within PfGW456L13_116at 133.371 kb on + strand, within PfGW456L13_116at 133.371 kb on + strand, within PfGW456L13_116at 133.372 kb on - strand, within PfGW456L13_116at 133.417 kb on + strand, within PfGW456L13_116at 133.417 kb on + strand, within PfGW456L13_116at 133.417 kb on + strand, within PfGW456L13_116at 133.418 kb on - strand, within PfGW456L13_116at 133.427 kb on - strand, within PfGW456L13_116at 133.427 kb on - strand, within PfGW456L13_116at 133.594 kb on + strand, within PfGW456L13_116at 133.594 kb on + strand, within PfGW456L13_116at 133.594 kb on + strand, within PfGW456L13_116at 133.594 kb on + strand, within PfGW456L13_116at 133.594 kb on + strand, within PfGW456L13_116at 133.594 kb on + strand, within PfGW456L13_116at 133.594 kb on + strand, within PfGW456L13_116at 133.594 kb on + strand, within PfGW456L13_116at 133.594 kb on + strand, within PfGW456L13_116at 133.594 kb on + strand, within PfGW456L13_116at 133.594 kb on + strand, within PfGW456L13_116at 133.595 kb on - strand, within PfGW456L13_116at 133.595 kb on - strand, within PfGW456L13_116at 133.595 kb on - strand, within PfGW456L13_116at 133.595 kb on - strand, within PfGW456L13_116at 133.595 kb on - strand, within PfGW456L13_116at 133.612 kb on + strand, within PfGW456L13_116at 133.747 kb on + strand, within PfGW456L13_116at 133.747 kb on + strand, within PfGW456L13_116at 133.747 kb on + strand, within PfGW456L13_116at 133.748 kb on - strand, within PfGW456L13_116at 133.748 kb on - strand, within PfGW456L13_116at 133.757 kb on - strand, within PfGW456L13_116at 133.757 kb on - strand, within PfGW456L13_116at 133.757 kb on - strand, within PfGW456L13_116at 133.757 kb on - strand, within PfGW456L13_116at 133.861 kb on + strand, within PfGW456L13_116at 133.861 kb on + strand, within PfGW456L13_116at 133.861 kb on + strand, within PfGW456L13_116at 133.861 kb on + strand, within PfGW456L13_116at 133.862 kb on - strand, within PfGW456L13_116at 133.878 kb on + strand, within PfGW456L13_116at 133.879 kb on - strand, within PfGW456L13_116at 134.153 kb on + strandat 134.154 kb on - strandat 134.154 kb on - strandat 134.154 kb on - strandat 134.154 kb on - strandat 134.160 kb on - strandat 134.198 kb on + strandat 134.198 kb on + strandat 134.198 kb on + strandat 134.199 kb on - strandat 134.199 kb on - strandat 134.199 kb on - strandat 134.267 kb on + strandat 134.267 kb on + strandat 134.284 kb on + strandat 134.284 kb on + strandat 134.284 kb on + strandat 134.284 kb on + strandat 134.284 kb on + strandat 134.285 kb on - strandat 134.285 kb on - strandat 134.285 kb on - strandat 134.285 kb on - strandat 134.285 kb on - strandat 134.285 kb on - strandat 134.358 kb on + strandat 134.358 kb on + strandat 134.358 kb on + strandat 134.359 kb on - strandat 134.359 kb on - strandat 134.359 kb on - strandat 134.365 kb on + strandat 134.365 kb on + strandat 134.365 kb on + strandat 134.366 kb on - strandat 134.366 kb on - strandat 134.366 kb on - strandat 134.366 kb on - strandat 134.366 kb on - strandat 134.366 kb on - strandat 134.366 kb on - strandat 134.366 kb on - strandat 134.505 kb on + strand, within PfGW456L13_117at 134.505 kb on + strand, within PfGW456L13_117at 134.505 kb on + strand, within PfGW456L13_117at 134.506 kb on - strand, within PfGW456L13_117at 134.506 kb on - strand, within PfGW456L13_117at 134.506 kb on - strand, within PfGW456L13_117at 134.506 kb on - strand, within PfGW456L13_117at 134.506 kb on - strand, within PfGW456L13_117at 134.506 kb on - strand, within PfGW456L13_117at 134.506 kb on - strand, within PfGW456L13_117at 134.664 kb on + strand, within PfGW456L13_117at 134.664 kb on + strand, within PfGW456L13_117at 134.664 kb on + strand, within PfGW456L13_117at 134.664 kb on + strand, within PfGW456L13_117at 134.664 kb on + strand, within PfGW456L13_117at 134.665 kb on - strand, within PfGW456L13_117at 134.665 kb on - strand, within PfGW456L13_117at 134.665 kb on - strand, within PfGW456L13_117at 134.665 kb on - strand, within PfGW456L13_117at 134.688 kb on + strand, within PfGW456L13_117at 134.689 kb on - strand, within PfGW456L13_117at 134.689 kb on - strand, within PfGW456L13_117at 134.689 kb on - strand, within PfGW456L13_117at 134.772 kb on + strand, within PfGW456L13_117at 134.772 kb on + strand, within PfGW456L13_117at 134.772 kb on + strand, within PfGW456L13_117at 134.772 kb on + strand, within PfGW456L13_117at 134.772 kb on + strand, within PfGW456L13_117at 134.772 kb on + strand, within PfGW456L13_117at 134.772 kb on + strand, within PfGW456L13_117at 134.772 kb on + strand, within PfGW456L13_117at 134.773 kb on - strand, within PfGW456L13_117at 134.773 kb on - strand, within PfGW456L13_117at 134.773 kb on - strand, within PfGW456L13_117at 134.773 kb on - strand, within PfGW456L13_117at 134.795 kb on - strand, within PfGW456L13_117at 135.100 kb on + strandat 135.100 kb on + strandat 135.100 kb on + strandat 135.100 kb on + strandat 135.100 kb on + strandat 135.100 kb on + strandat 135.100 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 5 mM
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132,318 + PfGW456L13_115 0.28 +0.6
132,318 + PfGW456L13_115 0.28 +0.7
132,318 + PfGW456L13_115 0.28 +0.9
132,318 + PfGW456L13_115 0.28 -0.6
132,318 + PfGW456L13_115 0.28 -0.0
132,319 - PfGW456L13_115 0.28 +0.1
132,319 - PfGW456L13_115 0.28 +0.3
132,366 + PfGW456L13_115 0.32 -0.6
132,366 + PfGW456L13_115 0.32 -2.5
132,366 + PfGW456L13_115 0.32 +0.2
132,367 - PfGW456L13_115 0.32 +0.5
132,367 - PfGW456L13_115 0.32 +0.5
132,367 - PfGW456L13_115 0.32 +1.1
132,367 - PfGW456L13_115 0.32 +0.2
132,367 - PfGW456L13_115 0.32 +1.6
132,402 + PfGW456L13_115 0.35 +0.4
132,403 - PfGW456L13_115 0.36 +0.8
132,496 - PfGW456L13_115 0.44 +1.3
132,496 - PfGW456L13_115 0.44 +1.1
132,634 + PfGW456L13_115 0.56 +0.2
132,635 - PfGW456L13_115 0.56 +0.9
132,744 + PfGW456L13_115 0.66 +1.2
132,744 + PfGW456L13_115 0.66 -0.3
132,744 + PfGW456L13_115 0.66 +0.1
132,744 + PfGW456L13_115 0.66 -0.9
132,744 + PfGW456L13_115 0.66 +1.5
132,745 - PfGW456L13_115 0.66 +0.2
132,745 - PfGW456L13_115 0.66 +0.8
132,930 + PfGW456L13_115 0.82 +1.2
132,934 + PfGW456L13_115 0.82 -0.4
132,934 + PfGW456L13_115 0.82 -2.4
132,934 + PfGW456L13_115 0.82 +0.9
132,934 + PfGW456L13_115 0.82 +0.9
132,973 + PfGW456L13_115 0.86 -0.5
132,974 - PfGW456L13_115 0.86 -0.5
132,974 - PfGW456L13_115 0.86 +1.7
133,026 + +1.2
133,027 - -1.4
133,027 - +0.8
133,086 + +0.0
133,086 + +1.0
133,086 + +1.4
133,122 + +0.1
133,123 - +0.9
133,123 - +0.6
133,178 + +0.6
133,178 + +1.0
133,178 + -0.0
133,178 + +1.0
133,178 + +1.3
133,178 + -0.5
133,178 + +0.5
133,178 + +0.7
133,178 + -1.9
133,179 - -0.4
133,179 - +0.2
133,179 - -0.9
133,179 - -0.7
133,179 - +0.2
133,179 - +0.4
133,179 - +0.1
133,357 + PfGW456L13_116 0.14 -0.0
133,358 - PfGW456L13_116 0.14 -1.0
133,371 + PfGW456L13_116 0.15 -1.4
133,371 + PfGW456L13_116 0.15 +0.3
133,371 + PfGW456L13_116 0.15 +1.1
133,372 - PfGW456L13_116 0.15 +0.4
133,417 + PfGW456L13_116 0.20 -0.1
133,417 + PfGW456L13_116 0.20 -1.2
133,417 + PfGW456L13_116 0.20 +0.5
133,418 - PfGW456L13_116 0.20 -1.1
133,427 - PfGW456L13_116 0.21 +0.9
133,427 - PfGW456L13_116 0.21 -0.0
133,594 + PfGW456L13_116 0.40 +0.2
133,594 + PfGW456L13_116 0.40 +0.6
133,594 + PfGW456L13_116 0.40 -0.4
133,594 + PfGW456L13_116 0.40 +2.2
133,594 + PfGW456L13_116 0.40 -0.1
133,594 + PfGW456L13_116 0.40 -0.2
133,594 + PfGW456L13_116 0.40 +0.7
133,594 + PfGW456L13_116 0.40 +0.1
133,594 + PfGW456L13_116 0.40 +0.6
133,594 + PfGW456L13_116 0.40 +0.6
133,594 + PfGW456L13_116 0.40 -0.4
133,595 - PfGW456L13_116 0.40 +0.4
133,595 - PfGW456L13_116 0.40 -2.6
133,595 - PfGW456L13_116 0.40 -0.7
133,595 - PfGW456L13_116 0.40 +0.3
133,595 - PfGW456L13_116 0.40 +0.3
133,612 + PfGW456L13_116 0.42 +0.3
133,747 + PfGW456L13_116 0.57 +0.4
133,747 + PfGW456L13_116 0.57 -1.8
133,747 + PfGW456L13_116 0.57 -0.9
133,748 - PfGW456L13_116 0.57 -2.3
133,748 - PfGW456L13_116 0.57 +1.3
133,757 - PfGW456L13_116 0.58 -0.2
133,757 - PfGW456L13_116 0.58 +0.2
133,757 - PfGW456L13_116 0.58 +0.5
133,757 - PfGW456L13_116 0.58 -0.1
133,861 + PfGW456L13_116 0.69 -0.2
133,861 + PfGW456L13_116 0.69 +0.1
133,861 + PfGW456L13_116 0.69 +0.2
133,861 + PfGW456L13_116 0.69 +0.2
133,862 - PfGW456L13_116 0.69 +0.1
133,878 + PfGW456L13_116 0.71 -0.2
133,879 - PfGW456L13_116 0.71 +0.9
134,153 + -0.9
134,154 - +0.5
134,154 - -2.8
134,154 - +0.8
134,154 - +0.4
134,160 - +0.2
134,198 + +0.7
134,198 + +0.1
134,198 + +1.6
134,199 - +0.1
134,199 - -0.1
134,199 - +0.8
134,267 + +1.1
134,267 + +0.6
134,284 + -0.4
134,284 + -1.0
134,284 + +1.1
134,284 + -1.2
134,284 + -0.4
134,285 - +1.3
134,285 - -0.2
134,285 - +0.2
134,285 - -2.2
134,285 - -0.6
134,285 - -0.2
134,358 + -1.6
134,358 + -2.0
134,358 + +0.5
134,359 - +0.6
134,359 - -0.0
134,359 - -1.5
134,365 + -0.8
134,365 + -0.6
134,365 + -0.0
134,366 - -0.2
134,366 - -0.5
134,366 - +0.9
134,366 - -2.0
134,366 - +0.0
134,366 - +0.3
134,366 - -1.7
134,366 - -0.2
134,505 + PfGW456L13_117 0.19 +0.7
134,505 + PfGW456L13_117 0.19 +0.1
134,505 + PfGW456L13_117 0.19 -0.2
134,506 - PfGW456L13_117 0.20 -2.0
134,506 - PfGW456L13_117 0.20 -0.5
134,506 - PfGW456L13_117 0.20 +0.5
134,506 - PfGW456L13_117 0.20 -0.2
134,506 - PfGW456L13_117 0.20 -1.8
134,506 - PfGW456L13_117 0.20 -0.2
134,506 - PfGW456L13_117 0.20 +0.5
134,664 + PfGW456L13_117 0.40 +0.4
134,664 + PfGW456L13_117 0.40 -0.6
134,664 + PfGW456L13_117 0.40 +0.9
134,664 + PfGW456L13_117 0.40 -1.4
134,664 + PfGW456L13_117 0.40 +0.1
134,665 - PfGW456L13_117 0.40 -0.8
134,665 - PfGW456L13_117 0.40 -1.8
134,665 - PfGW456L13_117 0.40 +1.3
134,665 - PfGW456L13_117 0.40 +1.1
134,688 + PfGW456L13_117 0.43 -0.9
134,689 - PfGW456L13_117 0.44 +0.2
134,689 - PfGW456L13_117 0.44 +0.3
134,689 - PfGW456L13_117 0.44 +0.7
134,772 + PfGW456L13_117 0.54 -0.1
134,772 + PfGW456L13_117 0.54 -1.4
134,772 + PfGW456L13_117 0.54 +0.2
134,772 + PfGW456L13_117 0.54 -0.1
134,772 + PfGW456L13_117 0.54 -1.0
134,772 + PfGW456L13_117 0.54 +0.9
134,772 + PfGW456L13_117 0.54 +1.3
134,772 + PfGW456L13_117 0.54 -0.5
134,773 - PfGW456L13_117 0.55 +0.0
134,773 - PfGW456L13_117 0.55 +0.3
134,773 - PfGW456L13_117 0.55 -0.9
134,773 - PfGW456L13_117 0.55 -2.0
134,795 - PfGW456L13_117 0.57 +0.7
135,100 + -0.9
135,100 + -2.1
135,100 + -1.0
135,100 + -0.3
135,100 + +0.6
135,100 + -0.1
135,100 + -1.7

Or see this region's nucleotide sequence