Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4639 and Echvi_4640 are separated by 38 nucleotides Echvi_4640 and Echvi_4641 are separated by 375 nucleotides Echvi_4641 and Echvi_4642 are separated by 5 nucleotides Echvi_4642 and Echvi_4643 are separated by 152 nucleotides
Echvi_4639: Echvi_4639 - TonB-linked outer membrane protein, SusC/RagA family, at 5,549,994 to 5,553,200
_4639
Echvi_4640: Echvi_4640 - hypothetical protein, at 5,553,239 to 5,553,331
_4640
Echvi_4641: Echvi_4641 - Outer membrane protein and related peptidoglycan-associated (lipo)proteins, at 5,553,707 to 5,555,617
_4641
Echvi_4642: Echvi_4642 - Organic radical activating enzymes, at 5,555,623 to 5,556,249
_4642
Echvi_4643: Echvi_4643 - 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase, at 5,556,402 to 5,557,286
_4643
Position (kb) 5553
5554
5555
5556 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5552.741 kb on + strand, within Echvi_4639 at 5552.754 kb on + strand, within Echvi_4639 at 5552.763 kb on + strand, within Echvi_4639 at 5552.763 kb on + strand, within Echvi_4639 at 5552.764 kb on - strand, within Echvi_4639 at 5552.796 kb on + strand, within Echvi_4639 at 5552.796 kb on + strand, within Echvi_4639 at 5552.796 kb on + strand, within Echvi_4639 at 5552.796 kb on + strand, within Echvi_4639 at 5552.804 kb on + strand, within Echvi_4639 at 5552.805 kb on - strand, within Echvi_4639 at 5552.805 kb on - strand, within Echvi_4639 at 5552.827 kb on - strand, within Echvi_4639 at 5552.858 kb on + strand, within Echvi_4639 at 5552.858 kb on + strand, within Echvi_4639 at 5552.858 kb on + strand, within Echvi_4639 at 5552.859 kb on - strand, within Echvi_4639 at 5552.859 kb on - strand, within Echvi_4639 at 5552.861 kb on + strand, within Echvi_4639 at 5552.862 kb on - strand, within Echvi_4639 at 5552.867 kb on + strand, within Echvi_4639 at 5552.868 kb on - strand, within Echvi_4639 at 5552.868 kb on - strand, within Echvi_4639 at 5553.022 kb on + strand at 5553.023 kb on - strand at 5553.057 kb on - strand at 5553.057 kb on - strand at 5553.113 kb on + strand at 5553.114 kb on - strand at 5553.165 kb on + strand at 5553.200 kb on + strand at 5553.220 kb on - strand at 5553.234 kb on - strand at 5553.234 kb on - strand at 5553.262 kb on - strand, within Echvi_4640 at 5553.399 kb on + strand at 5553.533 kb on + strand at 5553.536 kb on + strand at 5553.538 kb on + strand at 5553.538 kb on + strand at 5553.609 kb on - strand at 5553.611 kb on + strand at 5553.613 kb on + strand at 5553.613 kb on + strand at 5553.708 kb on + strand at 5553.818 kb on + strand at 5553.819 kb on - strand at 5553.830 kb on + strand at 5553.833 kb on + strand at 5553.834 kb on - strand at 5553.837 kb on + strand at 5553.881 kb on - strand at 5553.881 kb on - strand at 5553.882 kb on + strand at 5553.883 kb on - strand at 5553.902 kb on - strand, within Echvi_4641 at 5553.907 kb on + strand, within Echvi_4641 at 5553.908 kb on - strand, within Echvi_4641 at 5553.908 kb on - strand, within Echvi_4641 at 5553.925 kb on + strand, within Echvi_4641 at 5553.992 kb on + strand, within Echvi_4641 at 5554.067 kb on + strand, within Echvi_4641 at 5554.091 kb on + strand, within Echvi_4641 at 5554.146 kb on + strand, within Echvi_4641 at 5554.146 kb on + strand, within Echvi_4641 at 5554.146 kb on + strand, within Echvi_4641 at 5554.147 kb on - strand, within Echvi_4641 at 5554.147 kb on - strand, within Echvi_4641 at 5554.147 kb on - strand, within Echvi_4641 at 5554.147 kb on - strand, within Echvi_4641 at 5554.173 kb on + strand, within Echvi_4641 at 5554.184 kb on - strand, within Echvi_4641 at 5554.184 kb on - strand, within Echvi_4641 at 5554.226 kb on - strand, within Echvi_4641 at 5554.226 kb on - strand, within Echvi_4641 at 5554.226 kb on - strand, within Echvi_4641 at 5554.363 kb on - strand, within Echvi_4641 at 5554.363 kb on - strand, within Echvi_4641 at 5554.363 kb on - strand, within Echvi_4641 at 5554.403 kb on - strand, within Echvi_4641 at 5554.405 kb on - strand, within Echvi_4641 at 5554.407 kb on + strand, within Echvi_4641 at 5554.407 kb on + strand, within Echvi_4641 at 5554.407 kb on + strand, within Echvi_4641 at 5554.408 kb on - strand, within Echvi_4641 at 5554.408 kb on - strand, within Echvi_4641 at 5554.408 kb on - strand, within Echvi_4641 at 5554.463 kb on - strand, within Echvi_4641 at 5554.546 kb on + strand, within Echvi_4641 at 5554.547 kb on - strand, within Echvi_4641 at 5554.569 kb on - strand, within Echvi_4641 at 5554.569 kb on - strand, within Echvi_4641 at 5554.583 kb on - strand, within Echvi_4641 at 5554.688 kb on - strand, within Echvi_4641 at 5554.831 kb on + strand, within Echvi_4641 at 5554.831 kb on + strand, within Echvi_4641 at 5554.831 kb on + strand, within Echvi_4641 at 5554.834 kb on - strand, within Echvi_4641 at 5554.834 kb on - strand, within Echvi_4641 at 5554.834 kb on - strand, within Echvi_4641 at 5554.842 kb on + strand, within Echvi_4641 at 5554.842 kb on + strand, within Echvi_4641 at 5554.842 kb on + strand, within Echvi_4641 at 5554.842 kb on + strand, within Echvi_4641 at 5554.843 kb on - strand, within Echvi_4641 at 5554.843 kb on - strand, within Echvi_4641 at 5554.844 kb on + strand, within Echvi_4641 at 5554.844 kb on + strand, within Echvi_4641 at 5554.845 kb on - strand, within Echvi_4641 at 5554.845 kb on - strand, within Echvi_4641 at 5554.885 kb on + strand, within Echvi_4641 at 5554.887 kb on + strand, within Echvi_4641 at 5554.887 kb on + strand, within Echvi_4641 at 5554.919 kb on - strand, within Echvi_4641 at 5554.924 kb on + strand, within Echvi_4641 at 5554.924 kb on + strand, within Echvi_4641 at 5554.925 kb on - strand, within Echvi_4641 at 5554.925 kb on - strand, within Echvi_4641 at 5555.002 kb on + strand, within Echvi_4641 at 5555.048 kb on - strand, within Echvi_4641 at 5555.108 kb on + strand, within Echvi_4641 at 5555.213 kb on + strand, within Echvi_4641 at 5555.213 kb on + strand, within Echvi_4641 at 5555.213 kb on + strand, within Echvi_4641 at 5555.214 kb on - strand, within Echvi_4641 at 5555.287 kb on - strand, within Echvi_4641 at 5555.287 kb on - strand, within Echvi_4641 at 5555.288 kb on + strand, within Echvi_4641 at 5555.288 kb on + strand, within Echvi_4641 at 5555.288 kb on + strand, within Echvi_4641 at 5555.289 kb on - strand, within Echvi_4641 at 5555.289 kb on - strand, within Echvi_4641 at 5555.290 kb on + strand, within Echvi_4641 at 5555.290 kb on + strand, within Echvi_4641 at 5555.290 kb on + strand, within Echvi_4641 at 5555.290 kb on + strand, within Echvi_4641 at 5555.290 kb on + strand, within Echvi_4641 at 5555.291 kb on - strand, within Echvi_4641 at 5555.291 kb on - strand, within Echvi_4641 at 5555.291 kb on - strand, within Echvi_4641 at 5555.291 kb on - strand, within Echvi_4641 at 5555.291 kb on - strand, within Echvi_4641 at 5555.291 kb on - strand, within Echvi_4641 at 5555.291 kb on - strand, within Echvi_4641 at 5555.301 kb on - strand, within Echvi_4641 at 5555.309 kb on - strand, within Echvi_4641 at 5555.364 kb on - strand, within Echvi_4641 at 5555.396 kb on - strand, within Echvi_4641 at 5555.402 kb on + strand, within Echvi_4641 at 5555.402 kb on + strand, within Echvi_4641 at 5555.402 kb on + strand, within Echvi_4641 at 5555.422 kb on - strand, within Echvi_4641 at 5555.464 kb on - strand at 5555.522 kb on + strand at 5555.522 kb on + strand at 5555.522 kb on + strand at 5555.522 kb on + strand at 5555.522 kb on + strand at 5555.523 kb on - strand at 5555.523 kb on - strand at 5555.540 kb on - strand at 5555.551 kb on + strand at 5555.553 kb on + strand at 5555.554 kb on - strand at 5555.554 kb on - strand at 5555.554 kb on - strand at 5555.600 kb on + strand at 5555.624 kb on + strand at 5555.638 kb on - strand at 5555.706 kb on + strand, within Echvi_4642 at 5555.707 kb on - strand, within Echvi_4642 at 5555.820 kb on + strand, within Echvi_4642 at 5555.820 kb on + strand, within Echvi_4642 at 5555.821 kb on - strand, within Echvi_4642 at 5555.977 kb on + strand, within Echvi_4642 at 5555.985 kb on - strand, within Echvi_4642 at 5555.985 kb on - strand, within Echvi_4642 at 5556.030 kb on - strand, within Echvi_4642 at 5556.112 kb on + strand, within Echvi_4642 at 5556.113 kb on - strand, within Echvi_4642 at 5556.113 kb on - strand, within Echvi_4642 at 5556.136 kb on + strand, within Echvi_4642 at 5556.192 kb on - strand at 5556.250 kb on - strand at 5556.252 kb on + strand at 5556.254 kb on + strand at 5556.266 kb on + strand at 5556.289 kb on - strand at 5556.351 kb on + strand at 5556.351 kb on + strand at 5556.351 kb on + strand at 5556.362 kb on - strand at 5556.362 kb on - strand at 5556.409 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 5,552,741 + Echvi_4639 0.86 +0.3 5,552,754 + Echvi_4639 0.86 +0.2 5,552,763 + Echvi_4639 0.86 -0.5 5,552,763 + Echvi_4639 0.86 -0.4 5,552,764 - Echvi_4639 0.86 -0.2 5,552,796 + Echvi_4639 0.87 +0.8 5,552,796 + Echvi_4639 0.87 -1.5 5,552,796 + Echvi_4639 0.87 -1.3 5,552,796 + Echvi_4639 0.87 -0.3 5,552,804 + Echvi_4639 0.88 -0.7 5,552,805 - Echvi_4639 0.88 -1.6 5,552,805 - Echvi_4639 0.88 +1.6 5,552,827 - Echvi_4639 0.88 -1.1 5,552,858 + Echvi_4639 0.89 +0.4 5,552,858 + Echvi_4639 0.89 +0.5 5,552,858 + Echvi_4639 0.89 +0.7 5,552,859 - Echvi_4639 0.89 +2.4 5,552,859 - Echvi_4639 0.89 -0.7 5,552,861 + Echvi_4639 0.89 -0.2 5,552,862 - Echvi_4639 0.89 -0.4 5,552,867 + Echvi_4639 0.90 +0.1 5,552,868 - Echvi_4639 0.90 +1.1 5,552,868 - Echvi_4639 0.90 -1.1 5,553,022 + +1.1 5,553,023 - +0.0 5,553,057 - -0.2 5,553,057 - +2.4 5,553,113 + +1.7 5,553,114 - -0.3 5,553,165 + -0.4 5,553,200 + -0.8 5,553,220 - +0.8 5,553,234 - +0.4 5,553,234 - +0.2 5,553,262 - Echvi_4640 0.25 +0.7 5,553,399 + -0.2 5,553,533 + +1.5 5,553,536 + -0.2 5,553,538 + -0.2 5,553,538 + +0.7 5,553,609 - -0.1 5,553,611 + -0.7 5,553,613 + +0.0 5,553,613 + -0.1 5,553,708 + +1.1 5,553,818 + +0.1 5,553,819 - +0.8 5,553,830 + -0.4 5,553,833 + +0.1 5,553,834 - +1.8 5,553,837 + +0.2 5,553,881 - +0.0 5,553,881 - +0.5 5,553,882 + -0.5 5,553,883 - +1.0 5,553,902 - Echvi_4641 0.10 +0.1 5,553,907 + Echvi_4641 0.10 -0.7 5,553,908 - Echvi_4641 0.11 -0.0 5,553,908 - Echvi_4641 0.11 +0.4 5,553,925 + Echvi_4641 0.11 +0.1 5,553,992 + Echvi_4641 0.15 +0.6 5,554,067 + Echvi_4641 0.19 -1.5 5,554,091 + Echvi_4641 0.20 -0.3 5,554,146 + Echvi_4641 0.23 +0.5 5,554,146 + Echvi_4641 0.23 +2.1 5,554,146 + Echvi_4641 0.23 +0.6 5,554,147 - Echvi_4641 0.23 +1.0 5,554,147 - Echvi_4641 0.23 -0.9 5,554,147 - Echvi_4641 0.23 -1.5 5,554,147 - Echvi_4641 0.23 -1.6 5,554,173 + Echvi_4641 0.24 -0.1 5,554,184 - Echvi_4641 0.25 +0.2 5,554,184 - Echvi_4641 0.25 -0.5 5,554,226 - Echvi_4641 0.27 +0.6 5,554,226 - Echvi_4641 0.27 -0.4 5,554,226 - Echvi_4641 0.27 +0.4 5,554,363 - Echvi_4641 0.34 +1.1 5,554,363 - Echvi_4641 0.34 -0.4 5,554,363 - Echvi_4641 0.34 -0.4 5,554,403 - Echvi_4641 0.36 +0.1 5,554,405 - Echvi_4641 0.37 +0.7 5,554,407 + Echvi_4641 0.37 +0.5 5,554,407 + Echvi_4641 0.37 -0.2 5,554,407 + Echvi_4641 0.37 +1.5 5,554,408 - Echvi_4641 0.37 +1.6 5,554,408 - Echvi_4641 0.37 +0.2 5,554,408 - Echvi_4641 0.37 +1.1 5,554,463 - Echvi_4641 0.40 -0.1 5,554,546 + Echvi_4641 0.44 -2.0 5,554,547 - Echvi_4641 0.44 +0.3 5,554,569 - Echvi_4641 0.45 +1.4 5,554,569 - Echvi_4641 0.45 +0.5 5,554,583 - Echvi_4641 0.46 -0.8 5,554,688 - Echvi_4641 0.51 +1.8 5,554,831 + Echvi_4641 0.59 +0.6 5,554,831 + Echvi_4641 0.59 -0.9 5,554,831 + Echvi_4641 0.59 +0.2 5,554,834 - Echvi_4641 0.59 +0.5 5,554,834 - Echvi_4641 0.59 -0.7 5,554,834 - Echvi_4641 0.59 -0.4 5,554,842 + Echvi_4641 0.59 -0.5 5,554,842 + Echvi_4641 0.59 +0.1 5,554,842 + Echvi_4641 0.59 +0.5 5,554,842 + Echvi_4641 0.59 -0.6 5,554,843 - Echvi_4641 0.59 +0.1 5,554,843 - Echvi_4641 0.59 -1.2 5,554,844 + Echvi_4641 0.59 -1.1 5,554,844 + Echvi_4641 0.59 +0.1 5,554,845 - Echvi_4641 0.60 +1.1 5,554,845 - Echvi_4641 0.60 +0.6 5,554,885 + Echvi_4641 0.62 -0.2 5,554,887 + Echvi_4641 0.62 +0.4 5,554,887 + Echvi_4641 0.62 +1.8 5,554,919 - Echvi_4641 0.63 -1.4 5,554,924 + Echvi_4641 0.64 -0.4 5,554,924 + Echvi_4641 0.64 -1.0 5,554,925 - Echvi_4641 0.64 -0.3 5,554,925 - Echvi_4641 0.64 +0.5 5,555,002 + Echvi_4641 0.68 +0.5 5,555,048 - Echvi_4641 0.70 -1.9 5,555,108 + Echvi_4641 0.73 +0.4 5,555,213 + Echvi_4641 0.79 +1.8 5,555,213 + Echvi_4641 0.79 +0.4 5,555,213 + Echvi_4641 0.79 -0.2 5,555,214 - Echvi_4641 0.79 -0.2 5,555,287 - Echvi_4641 0.83 -2.1 5,555,287 - Echvi_4641 0.83 -0.1 5,555,288 + Echvi_4641 0.83 +0.0 5,555,288 + Echvi_4641 0.83 +0.8 5,555,288 + Echvi_4641 0.83 -0.3 5,555,289 - Echvi_4641 0.83 +0.2 5,555,289 - Echvi_4641 0.83 +0.7 5,555,290 + Echvi_4641 0.83 -0.1 5,555,290 + Echvi_4641 0.83 +0.5 5,555,290 + Echvi_4641 0.83 -2.4 5,555,290 + Echvi_4641 0.83 +1.8 5,555,290 + Echvi_4641 0.83 +1.0 5,555,291 - Echvi_4641 0.83 +0.5 5,555,291 - Echvi_4641 0.83 +0.7 5,555,291 - Echvi_4641 0.83 -2.3 5,555,291 - Echvi_4641 0.83 -0.8 5,555,291 - Echvi_4641 0.83 +0.9 5,555,291 - Echvi_4641 0.83 -0.2 5,555,291 - Echvi_4641 0.83 +0.9 5,555,301 - Echvi_4641 0.83 -1.2 5,555,309 - Echvi_4641 0.84 +0.9 5,555,364 - Echvi_4641 0.87 +0.6 5,555,396 - Echvi_4641 0.88 +0.5 5,555,402 + Echvi_4641 0.89 -0.6 5,555,402 + Echvi_4641 0.89 +0.9 5,555,402 + Echvi_4641 0.89 +1.8 5,555,422 - Echvi_4641 0.90 +2.4 5,555,464 - -0.1 5,555,522 + -0.6 5,555,522 + -0.4 5,555,522 + -0.5 5,555,522 + +0.7 5,555,522 + +1.2 5,555,523 - +0.6 5,555,523 - -0.1 5,555,540 - -0.5 5,555,551 + +1.2 5,555,553 + +1.8 5,555,554 - +0.3 5,555,554 - +0.8 5,555,554 - +0.9 5,555,600 + -0.0 5,555,624 + -1.3 5,555,638 - -0.1 5,555,706 + Echvi_4642 0.13 +0.3 5,555,707 - Echvi_4642 0.13 -1.1 5,555,820 + Echvi_4642 0.31 -0.6 5,555,820 + Echvi_4642 0.31 -0.1 5,555,821 - Echvi_4642 0.32 +1.1 5,555,977 + Echvi_4642 0.56 -0.6 5,555,985 - Echvi_4642 0.58 +0.0 5,555,985 - Echvi_4642 0.58 +0.2 5,556,030 - Echvi_4642 0.65 -0.5 5,556,112 + Echvi_4642 0.78 -0.2 5,556,113 - Echvi_4642 0.78 +0.4 5,556,113 - Echvi_4642 0.78 +1.2 5,556,136 + Echvi_4642 0.82 -0.6 5,556,192 - +0.7 5,556,250 - -0.1 5,556,252 + +0.5 5,556,254 + +0.6 5,556,266 + -1.0 5,556,289 - +0.4 5,556,351 + +0.3 5,556,351 + -1.6 5,556,351 + -0.6 5,556,362 - -0.0 5,556,362 - -1.5 5,556,409 + -0.4
Or see this region's nucleotide sequence