Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0734

Experiment: D-Glucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_0733 and Echvi_0734 are separated by 353 nucleotidesEchvi_0734 and Echvi_0735 are separated by 11 nucleotides Echvi_0733: Echvi_0733 - Outer membrane protein and related peptidoglycan-associated (lipo)proteins, at 820,204 to 822,126 _0733 Echvi_0734: Echvi_0734 - Phosphoribosylaminoimidazole (AIR) synthetase, at 822,480 to 823,643 _0734 Echvi_0735: Echvi_0735 - Neutral/alkaline non-lysosomal ceramidase., at 823,655 to 824,980 _0735 Position (kb) 822 823 824Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 821.653 kb on + strand, within Echvi_0733at 821.688 kb on + strand, within Echvi_0733at 821.724 kb on + strand, within Echvi_0733at 821.800 kb on + strand, within Echvi_0733at 821.800 kb on + strand, within Echvi_0733at 821.800 kb on + strand, within Echvi_0733at 821.801 kb on - strand, within Echvi_0733at 821.801 kb on - strand, within Echvi_0733at 821.801 kb on - strand, within Echvi_0733at 821.801 kb on - strand, within Echvi_0733at 821.801 kb on - strand, within Echvi_0733at 821.801 kb on - strand, within Echvi_0733at 821.803 kb on + strand, within Echvi_0733at 821.804 kb on - strand, within Echvi_0733at 821.843 kb on + strand, within Echvi_0733at 821.843 kb on + strand, within Echvi_0733at 821.853 kb on + strand, within Echvi_0733at 821.900 kb on + strand, within Echvi_0733at 821.900 kb on + strand, within Echvi_0733at 821.935 kb on + strandat 821.936 kb on - strandat 821.936 kb on - strandat 821.940 kb on + strandat 821.941 kb on - strandat 821.976 kb on - strandat 821.980 kb on + strandat 821.980 kb on + strandat 821.980 kb on + strandat 821.981 kb on - strandat 821.981 kb on - strandat 821.981 kb on - strandat 821.981 kb on - strandat 821.981 kb on - strandat 821.981 kb on - strandat 821.982 kb on + strandat 821.983 kb on - strandat 821.983 kb on - strandat 821.983 kb on - strandat 821.983 kb on - strandat 821.997 kb on + strandat 822.094 kb on - strandat 822.103 kb on - strandat 822.158 kb on - strandat 822.160 kb on - strandat 822.160 kb on - strandat 822.160 kb on - strandat 822.164 kb on + strandat 822.165 kb on - strandat 822.243 kb on - strandat 822.243 kb on - strandat 822.256 kb on + strandat 822.294 kb on - strandat 822.301 kb on + strandat 822.301 kb on + strandat 822.302 kb on - strandat 822.395 kb on + strandat 822.395 kb on + strandat 822.396 kb on - strandat 822.423 kb on + strandat 822.426 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
remove
821,653 + Echvi_0733 0.75 +1.4
821,688 + Echvi_0733 0.77 -0.1
821,724 + Echvi_0733 0.79 +0.4
821,800 + Echvi_0733 0.83 +1.1
821,800 + Echvi_0733 0.83 +0.4
821,800 + Echvi_0733 0.83 +0.5
821,801 - Echvi_0733 0.83 +1.3
821,801 - Echvi_0733 0.83 +0.7
821,801 - Echvi_0733 0.83 +0.7
821,801 - Echvi_0733 0.83 +0.3
821,801 - Echvi_0733 0.83 +0.9
821,801 - Echvi_0733 0.83 +1.6
821,803 + Echvi_0733 0.83 +0.2
821,804 - Echvi_0733 0.83 -1.8
821,843 + Echvi_0733 0.85 +0.5
821,843 + Echvi_0733 0.85 -0.3
821,853 + Echvi_0733 0.86 +0.6
821,900 + Echvi_0733 0.88 +0.7
821,900 + Echvi_0733 0.88 +0.8
821,935 + +1.1
821,936 - +4.4
821,936 - +0.8
821,940 + -0.5
821,941 - -0.6
821,976 - +1.1
821,980 + +0.3
821,980 + +1.3
821,980 + +0.5
821,981 - +1.3
821,981 - +0.3
821,981 - +1.3
821,981 - +0.5
821,981 - -1.1
821,981 - -0.7
821,982 + +1.1
821,983 - +0.3
821,983 - +0.5
821,983 - +1.1
821,983 - +0.7
821,997 + +0.6
822,094 - +1.7
822,103 - -0.4
822,158 - +0.3
822,160 - +0.5
822,160 - +0.7
822,160 - -0.4
822,164 + -0.6
822,165 - +0.0
822,243 - +0.5
822,243 - +0.1
822,256 + +0.2
822,294 - +0.9
822,301 + +1.0
822,301 + +0.3
822,302 - +0.4
822,395 + -0.1
822,395 + +1.1
822,396 - +0.8
822,423 + +0.0
822,426 - +0.5

Or see this region's nucleotide sequence