Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0708 and Echvi_0709 are separated by 76 nucleotides Echvi_0709 and Echvi_0710 are separated by 194 nucleotides Echvi_0710 and Echvi_0711 are separated by 9 nucleotides Echvi_0711 and Echvi_0712 are separated by 22 nucleotides
Echvi_0708: Echvi_0708 - transcription termination factor NusA, at 798,525 to 799,772
_0708
Echvi_0709: Echvi_0709 - translation initiation factor IF-2, at 799,849 to 802,848
_0709
Echvi_0710: Echvi_0710 - hypothetical protein, at 803,043 to 803,372
_0710
Echvi_0711: Echvi_0711 - hypothetical protein, at 803,382 to 803,615
_0711
Echvi_0712: Echvi_0712 - hypothetical protein, at 803,638 to 804,831
_0712
Position (kb) 799
800
801
802
803 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 799.810 kb on + strand at 799.812 kb on + strand at 799.812 kb on + strand at 799.812 kb on + strand at 799.812 kb on + strand at 799.816 kb on + strand at 799.816 kb on + strand at 802.886 kb on - strand at 802.891 kb on - strand at 802.975 kb on + strand at 803.125 kb on + strand, within Echvi_0710 at 803.125 kb on + strand, within Echvi_0710 at 803.126 kb on - strand, within Echvi_0710 at 803.126 kb on - strand, within Echvi_0710 at 803.126 kb on - strand, within Echvi_0710 at 803.127 kb on + strand, within Echvi_0710 at 803.127 kb on + strand, within Echvi_0710 at 803.127 kb on + strand, within Echvi_0710 at 803.143 kb on + strand, within Echvi_0710 at 803.152 kb on + strand, within Echvi_0710 at 803.152 kb on + strand, within Echvi_0710 at 803.152 kb on + strand, within Echvi_0710 at 803.156 kb on + strand, within Echvi_0710 at 803.168 kb on + strand, within Echvi_0710 at 803.195 kb on - strand, within Echvi_0710 at 803.343 kb on + strand at 803.350 kb on + strand at 803.351 kb on - strand at 803.363 kb on - strand at 803.363 kb on - strand at 803.370 kb on + strand at 803.410 kb on - strand, within Echvi_0711 at 803.410 kb on - strand, within Echvi_0711 at 803.418 kb on - strand, within Echvi_0711 at 803.522 kb on - strand, within Echvi_0711 at 803.522 kb on - strand, within Echvi_0711 at 803.539 kb on + strand, within Echvi_0711 at 803.621 kb on + strand at 803.628 kb on + strand at 803.657 kb on + strand at 803.657 kb on + strand at 803.671 kb on - strand at 803.685 kb on + strand at 803.694 kb on + strand at 803.700 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 799,810 + -0.7 799,812 + -0.1 799,812 + +0.6 799,812 + +1.3 799,812 + -0.0 799,816 + +0.5 799,816 + +1.0 802,886 - +0.2 802,891 - -0.5 802,975 + +0.4 803,125 + Echvi_0710 0.25 +0.7 803,125 + Echvi_0710 0.25 +0.5 803,126 - Echvi_0710 0.25 -1.9 803,126 - Echvi_0710 0.25 +0.5 803,126 - Echvi_0710 0.25 +1.3 803,127 + Echvi_0710 0.25 +0.3 803,127 + Echvi_0710 0.25 +0.8 803,127 + Echvi_0710 0.25 -1.0 803,143 + Echvi_0710 0.30 -1.4 803,152 + Echvi_0710 0.33 +0.3 803,152 + Echvi_0710 0.33 +0.2 803,152 + Echvi_0710 0.33 +0.4 803,156 + Echvi_0710 0.34 +1.1 803,168 + Echvi_0710 0.38 +1.8 803,195 - Echvi_0710 0.46 -0.1 803,343 + -0.1 803,350 + -0.3 803,351 - -2.3 803,363 - -2.0 803,363 - +0.3 803,370 + +0.3 803,410 - Echvi_0711 0.12 -3.1 803,410 - Echvi_0711 0.12 -0.9 803,418 - Echvi_0711 0.15 -1.7 803,522 - Echvi_0711 0.60 +1.1 803,522 - Echvi_0711 0.60 -0.9 803,539 + Echvi_0711 0.67 -2.2 803,621 + -0.4 803,628 + -1.3 803,657 + -0.3 803,657 + -0.2 803,671 - +0.1 803,685 + +0.1 803,694 + -0.2 803,700 - +0.4
Or see this region's nucleotide sequence