Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_21400

Experiment: m.b. benzoic 0.58 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_21395 and CA264_21400 are separated by 480 nucleotidesCA264_21400 and CA264_21405 are separated by 116 nucleotidesCA264_21405 and CA264_21410 overlap by 4 nucleotides CA264_21395: CA264_21395 - hypothetical protein, at 142,122 to 142,967 _21395 CA264_21400: CA264_21400 - hypothetical protein, at 143,448 to 145,292 _21400 CA264_21405: CA264_21405 - hypothetical protein, at 145,409 to 146,134 _21405 CA264_21410: CA264_21410 - hypothetical protein, at 146,131 to 147,102 _21410 Position (kb) 143 144 145 146Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 142.612 kb on + strand, within CA264_21395at 142.717 kb on + strand, within CA264_21395at 142.752 kb on - strand, within CA264_21395at 142.752 kb on - strand, within CA264_21395at 142.777 kb on + strand, within CA264_21395at 142.778 kb on - strand, within CA264_21395at 142.778 kb on - strand, within CA264_21395at 142.782 kb on + strand, within CA264_21395at 142.782 kb on + strand, within CA264_21395at 142.789 kb on + strand, within CA264_21395at 142.852 kb on + strand, within CA264_21395at 142.852 kb on + strand, within CA264_21395at 142.853 kb on - strand, within CA264_21395at 142.937 kb on - strandat 142.957 kb on - strandat 142.959 kb on + strandat 142.972 kb on + strandat 142.976 kb on - strandat 143.038 kb on + strandat 143.098 kb on + strandat 143.098 kb on + strandat 143.101 kb on + strandat 143.101 kb on + strandat 143.137 kb on + strandat 143.217 kb on + strandat 143.218 kb on - strandat 143.353 kb on - strandat 143.437 kb on + strandat 143.439 kb on + strandat 143.439 kb on + strandat 143.507 kb on + strandat 143.507 kb on + strandat 143.509 kb on + strandat 143.517 kb on + strandat 143.518 kb on - strandat 143.518 kb on - strandat 143.614 kb on - strandat 143.614 kb on - strandat 143.614 kb on - strandat 143.614 kb on - strandat 143.622 kb on - strandat 143.654 kb on + strand, within CA264_21400at 143.661 kb on - strand, within CA264_21400at 143.724 kb on - strand, within CA264_21400at 143.739 kb on + strand, within CA264_21400at 143.769 kb on + strand, within CA264_21400at 143.770 kb on - strand, within CA264_21400at 143.770 kb on - strand, within CA264_21400at 143.826 kb on + strand, within CA264_21400at 143.840 kb on + strand, within CA264_21400at 143.841 kb on - strand, within CA264_21400at 143.841 kb on - strand, within CA264_21400at 143.846 kb on - strand, within CA264_21400at 143.850 kb on - strand, within CA264_21400at 143.861 kb on - strand, within CA264_21400at 143.979 kb on - strand, within CA264_21400at 144.036 kb on + strand, within CA264_21400at 144.037 kb on - strand, within CA264_21400at 144.041 kb on - strand, within CA264_21400at 144.041 kb on - strand, within CA264_21400at 144.080 kb on - strand, within CA264_21400at 144.080 kb on - strand, within CA264_21400at 144.090 kb on - strand, within CA264_21400at 144.093 kb on + strand, within CA264_21400at 144.093 kb on + strand, within CA264_21400at 144.093 kb on + strand, within CA264_21400at 144.094 kb on - strand, within CA264_21400at 144.094 kb on - strand, within CA264_21400at 144.094 kb on - strand, within CA264_21400at 144.103 kb on + strand, within CA264_21400at 144.103 kb on + strand, within CA264_21400at 144.104 kb on - strand, within CA264_21400at 144.104 kb on - strand, within CA264_21400at 144.104 kb on - strand, within CA264_21400at 144.111 kb on - strand, within CA264_21400at 144.111 kb on - strand, within CA264_21400at 144.113 kb on + strand, within CA264_21400at 144.114 kb on - strand, within CA264_21400at 144.129 kb on + strand, within CA264_21400at 144.141 kb on - strand, within CA264_21400at 144.193 kb on - strand, within CA264_21400at 144.198 kb on - strand, within CA264_21400at 144.250 kb on - strand, within CA264_21400at 144.250 kb on - strand, within CA264_21400at 144.253 kb on + strand, within CA264_21400at 144.253 kb on + strand, within CA264_21400at 144.254 kb on - strand, within CA264_21400at 144.254 kb on - strand, within CA264_21400at 144.254 kb on - strand, within CA264_21400at 144.259 kb on + strand, within CA264_21400at 144.260 kb on - strand, within CA264_21400at 144.260 kb on - strand, within CA264_21400at 144.268 kb on + strand, within CA264_21400at 144.284 kb on + strand, within CA264_21400at 144.337 kb on + strand, within CA264_21400at 144.428 kb on - strand, within CA264_21400at 144.471 kb on + strand, within CA264_21400at 144.473 kb on + strand, within CA264_21400at 144.473 kb on + strand, within CA264_21400at 144.473 kb on + strand, within CA264_21400at 144.474 kb on - strand, within CA264_21400at 144.493 kb on + strand, within CA264_21400at 144.493 kb on + strand, within CA264_21400at 144.559 kb on + strand, within CA264_21400at 144.577 kb on + strand, within CA264_21400at 144.615 kb on + strand, within CA264_21400at 144.616 kb on - strand, within CA264_21400at 144.640 kb on + strand, within CA264_21400at 144.640 kb on + strand, within CA264_21400at 144.641 kb on - strand, within CA264_21400at 144.685 kb on - strand, within CA264_21400at 144.693 kb on + strand, within CA264_21400at 144.727 kb on + strand, within CA264_21400at 144.728 kb on - strand, within CA264_21400at 144.736 kb on + strand, within CA264_21400at 144.737 kb on - strand, within CA264_21400at 144.783 kb on + strand, within CA264_21400at 144.784 kb on - strand, within CA264_21400at 144.784 kb on - strand, within CA264_21400at 144.826 kb on + strand, within CA264_21400at 144.826 kb on + strand, within CA264_21400at 144.841 kb on + strand, within CA264_21400at 144.842 kb on - strand, within CA264_21400at 144.842 kb on - strand, within CA264_21400at 144.873 kb on + strand, within CA264_21400at 144.873 kb on + strand, within CA264_21400at 144.874 kb on - strand, within CA264_21400at 144.886 kb on + strand, within CA264_21400at 144.914 kb on + strand, within CA264_21400at 144.917 kb on - strand, within CA264_21400at 144.917 kb on - strand, within CA264_21400at 144.917 kb on - strand, within CA264_21400at 144.920 kb on + strand, within CA264_21400at 144.920 kb on + strand, within CA264_21400at 144.921 kb on - strand, within CA264_21400at 144.998 kb on + strand, within CA264_21400at 145.001 kb on + strand, within CA264_21400at 145.002 kb on - strand, within CA264_21400at 145.042 kb on + strand, within CA264_21400at 145.042 kb on + strand, within CA264_21400at 145.042 kb on + strand, within CA264_21400at 145.058 kb on + strand, within CA264_21400at 145.094 kb on + strand, within CA264_21400at 145.095 kb on - strand, within CA264_21400at 145.109 kb on - strandat 145.115 kb on - strandat 145.115 kb on - strandat 145.115 kb on - strandat 145.191 kb on - strandat 145.199 kb on + strandat 145.200 kb on - strandat 145.214 kb on - strandat 145.255 kb on + strandat 145.276 kb on + strandat 145.357 kb on + strandat 145.358 kb on - strandat 145.364 kb on - strandat 145.374 kb on + strandat 146.209 kb on + strandat 146.209 kb on + strandat 146.210 kb on - strandat 146.210 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.58 mg/ml
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142,612 + CA264_21395 0.58 -0.7
142,717 + CA264_21395 0.70 -0.8
142,752 - CA264_21395 0.74 +0.3
142,752 - CA264_21395 0.74 -0.0
142,777 + CA264_21395 0.77 -0.9
142,778 - CA264_21395 0.78 +0.9
142,778 - CA264_21395 0.78 +0.8
142,782 + CA264_21395 0.78 -2.0
142,782 + CA264_21395 0.78 -0.8
142,789 + CA264_21395 0.79 -0.7
142,852 + CA264_21395 0.86 -0.7
142,852 + CA264_21395 0.86 -1.1
142,853 - CA264_21395 0.86 +0.4
142,937 - +1.1
142,957 - -1.0
142,959 + -1.3
142,972 + -1.8
142,976 - -2.9
143,038 + -1.3
143,098 + -1.2
143,098 + +1.5
143,101 + +0.5
143,101 + -1.5
143,137 + -1.2
143,217 + -1.0
143,218 - +0.1
143,353 - -1.0
143,437 + -1.7
143,439 + -0.4
143,439 + -1.7
143,507 + -1.1
143,507 + -0.6
143,509 + -0.3
143,517 + +2.1
143,518 - -1.4
143,518 - -0.4
143,614 - -0.3
143,614 - -1.5
143,614 - -1.3
143,614 - +0.1
143,622 - -0.7
143,654 + CA264_21400 0.11 -0.2
143,661 - CA264_21400 0.12 -0.4
143,724 - CA264_21400 0.15 -0.1
143,739 + CA264_21400 0.16 -1.2
143,769 + CA264_21400 0.17 -2.5
143,770 - CA264_21400 0.17 +0.1
143,770 - CA264_21400 0.17 +1.3
143,826 + CA264_21400 0.20 +0.1
143,840 + CA264_21400 0.21 -0.6
143,841 - CA264_21400 0.21 -1.4
143,841 - CA264_21400 0.21 -0.1
143,846 - CA264_21400 0.22 -1.2
143,850 - CA264_21400 0.22 -0.8
143,861 - CA264_21400 0.22 -2.2
143,979 - CA264_21400 0.29 -1.5
144,036 + CA264_21400 0.32 -0.8
144,037 - CA264_21400 0.32 -0.1
144,041 - CA264_21400 0.32 -0.7
144,041 - CA264_21400 0.32 +0.4
144,080 - CA264_21400 0.34 +1.0
144,080 - CA264_21400 0.34 -0.8
144,090 - CA264_21400 0.35 -0.0
144,093 + CA264_21400 0.35 -0.5
144,093 + CA264_21400 0.35 -1.4
144,093 + CA264_21400 0.35 -1.1
144,094 - CA264_21400 0.35 -0.1
144,094 - CA264_21400 0.35 -1.2
144,094 - CA264_21400 0.35 +0.5
144,103 + CA264_21400 0.36 +0.7
144,103 + CA264_21400 0.36 +0.4
144,104 - CA264_21400 0.36 -0.7
144,104 - CA264_21400 0.36 +1.1
144,104 - CA264_21400 0.36 +1.1
144,111 - CA264_21400 0.36 +0.4
144,111 - CA264_21400 0.36 +0.5
144,113 + CA264_21400 0.36 +0.4
144,114 - CA264_21400 0.36 -0.2
144,129 + CA264_21400 0.37 +0.1
144,141 - CA264_21400 0.38 +0.5
144,193 - CA264_21400 0.40 -1.0
144,198 - CA264_21400 0.41 +0.1
144,250 - CA264_21400 0.43 +1.0
144,250 - CA264_21400 0.43 +0.5
144,253 + CA264_21400 0.44 +0.4
144,253 + CA264_21400 0.44 -0.7
144,254 - CA264_21400 0.44 -0.8
144,254 - CA264_21400 0.44 +0.4
144,254 - CA264_21400 0.44 -1.0
144,259 + CA264_21400 0.44 -2.6
144,260 - CA264_21400 0.44 +0.0
144,260 - CA264_21400 0.44 +0.7
144,268 + CA264_21400 0.44 -0.9
144,284 + CA264_21400 0.45 -1.7
144,337 + CA264_21400 0.48 -1.8
144,428 - CA264_21400 0.53 -0.5
144,471 + CA264_21400 0.55 -1.7
144,473 + CA264_21400 0.56 -1.1
144,473 + CA264_21400 0.56 -0.5
144,473 + CA264_21400 0.56 -1.0
144,474 - CA264_21400 0.56 +0.1
144,493 + CA264_21400 0.57 -0.8
144,493 + CA264_21400 0.57 -0.9
144,559 + CA264_21400 0.60 +0.2
144,577 + CA264_21400 0.61 -0.8
144,615 + CA264_21400 0.63 -0.6
144,616 - CA264_21400 0.63 -0.6
144,640 + CA264_21400 0.65 -0.9
144,640 + CA264_21400 0.65 -0.7
144,641 - CA264_21400 0.65 +0.5
144,685 - CA264_21400 0.67 +0.1
144,693 + CA264_21400 0.67 -1.5
144,727 + CA264_21400 0.69 -1.7
144,728 - CA264_21400 0.69 -0.5
144,736 + CA264_21400 0.70 +1.1
144,737 - CA264_21400 0.70 -0.6
144,783 + CA264_21400 0.72 +2.1
144,784 - CA264_21400 0.72 +0.8
144,784 - CA264_21400 0.72 -0.9
144,826 + CA264_21400 0.75 -2.2
144,826 + CA264_21400 0.75 -1.1
144,841 + CA264_21400 0.76 +0.1
144,842 - CA264_21400 0.76 +0.4
144,842 - CA264_21400 0.76 +2.7
144,873 + CA264_21400 0.77 -1.9
144,873 + CA264_21400 0.77 +0.1
144,874 - CA264_21400 0.77 +0.4
144,886 + CA264_21400 0.78 +0.7
144,914 + CA264_21400 0.79 +2.7
144,917 - CA264_21400 0.80 +0.1
144,917 - CA264_21400 0.80 -1.1
144,917 - CA264_21400 0.80 -1.7
144,920 + CA264_21400 0.80 -2.2
144,920 + CA264_21400 0.80 -1.9
144,921 - CA264_21400 0.80 -0.3
144,998 + CA264_21400 0.84 -0.5
145,001 + CA264_21400 0.84 +0.8
145,002 - CA264_21400 0.84 +0.1
145,042 + CA264_21400 0.86 -0.7
145,042 + CA264_21400 0.86 -0.3
145,042 + CA264_21400 0.86 -1.1
145,058 + CA264_21400 0.87 -0.6
145,094 + CA264_21400 0.89 -3.8
145,095 - CA264_21400 0.89 +1.1
145,109 - +1.1
145,115 - -0.7
145,115 - +0.1
145,115 - -0.5
145,191 - -2.1
145,199 + -1.7
145,200 - +0.0
145,214 - -0.3
145,255 + -1.6
145,276 + -2.0
145,357 + -0.6
145,358 - -0.5
145,364 - -1.4
145,374 + -1.6
146,209 + +0.3
146,209 + -0.9
146,210 - +0.1
146,210 - +1.1

Or see this region's nucleotide sequence