Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_20460

Experiment: m.b. benzoic 0.58 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_20455 and CA264_20460 are separated by 280 nucleotidesCA264_20460 and CA264_20465 are separated by 168 nucleotides CA264_20455: CA264_20455 - LLM class flavin-dependent oxidoreductase, at 4,714,421 to 4,715,464 _20455 CA264_20460: CA264_20460 - hypothetical protein, at 4,715,745 to 4,716,116 _20460 CA264_20465: CA264_20465 - aspartate carbamoyltransferase, at 4,716,285 to 4,717,208 _20465 Position (kb) 4715 4716 4717Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4714.805 kb on + strand, within CA264_20455at 4714.805 kb on + strand, within CA264_20455at 4714.805 kb on + strand, within CA264_20455at 4714.836 kb on + strand, within CA264_20455at 4714.844 kb on + strand, within CA264_20455at 4715.028 kb on + strand, within CA264_20455at 4715.057 kb on - strand, within CA264_20455at 4715.144 kb on + strand, within CA264_20455at 4715.177 kb on - strand, within CA264_20455at 4715.205 kb on + strand, within CA264_20455at 4715.205 kb on + strand, within CA264_20455at 4715.206 kb on - strand, within CA264_20455at 4715.206 kb on - strand, within CA264_20455at 4715.240 kb on + strand, within CA264_20455at 4715.241 kb on - strand, within CA264_20455at 4715.241 kb on - strand, within CA264_20455at 4715.241 kb on - strand, within CA264_20455at 4715.243 kb on - strand, within CA264_20455at 4715.384 kb on + strandat 4715.384 kb on + strandat 4715.386 kb on + strandat 4715.387 kb on - strandat 4715.387 kb on - strandat 4715.387 kb on - strandat 4715.387 kb on - strandat 4715.387 kb on - strandat 4715.477 kb on - strandat 4715.490 kb on + strandat 4715.515 kb on + strandat 4715.526 kb on + strandat 4715.527 kb on - strandat 4715.527 kb on - strandat 4715.529 kb on - strandat 4715.595 kb on + strandat 4715.595 kb on + strandat 4715.606 kb on - strandat 4715.606 kb on - strandat 4715.618 kb on + strandat 4715.619 kb on - strandat 4715.621 kb on + strandat 4715.622 kb on - strandat 4715.625 kb on + strandat 4715.649 kb on + strandat 4715.650 kb on - strandat 4715.771 kb on + strandat 4715.853 kb on + strand, within CA264_20460at 4715.892 kb on - strand, within CA264_20460at 4715.912 kb on + strand, within CA264_20460at 4715.913 kb on - strand, within CA264_20460at 4716.029 kb on + strand, within CA264_20460at 4716.029 kb on + strand, within CA264_20460at 4716.030 kb on - strand, within CA264_20460at 4716.105 kb on - strandat 4716.139 kb on - strandat 4716.257 kb on + strandat 4716.307 kb on + strandat 4716.312 kb on + strandat 4716.408 kb on - strand, within CA264_20465at 4716.410 kb on + strand, within CA264_20465

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.58 mg/ml
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4,714,805 + CA264_20455 0.37 +0.1
4,714,805 + CA264_20455 0.37 -0.2
4,714,805 + CA264_20455 0.37 +0.1
4,714,836 + CA264_20455 0.40 +0.1
4,714,844 + CA264_20455 0.41 +0.2
4,715,028 + CA264_20455 0.58 +0.6
4,715,057 - CA264_20455 0.61 -0.0
4,715,144 + CA264_20455 0.69 +1.4
4,715,177 - CA264_20455 0.72 +0.7
4,715,205 + CA264_20455 0.75 +1.6
4,715,205 + CA264_20455 0.75 +0.1
4,715,206 - CA264_20455 0.75 +0.6
4,715,206 - CA264_20455 0.75 -0.2
4,715,240 + CA264_20455 0.78 +0.2
4,715,241 - CA264_20455 0.79 +0.4
4,715,241 - CA264_20455 0.79 -0.1
4,715,241 - CA264_20455 0.79 -0.2
4,715,243 - CA264_20455 0.79 -0.0
4,715,384 + +0.5
4,715,384 + -0.3
4,715,386 + -0.8
4,715,387 - -1.6
4,715,387 - +0.2
4,715,387 - -0.0
4,715,387 - +0.0
4,715,387 - -0.2
4,715,477 - -0.8
4,715,490 + -0.5
4,715,515 + +0.0
4,715,526 + +0.3
4,715,527 - +0.1
4,715,527 - +0.1
4,715,529 - -0.1
4,715,595 + +0.4
4,715,595 + +0.8
4,715,606 - -1.2
4,715,606 - +0.5
4,715,618 + +0.1
4,715,619 - -0.6
4,715,621 + +0.0
4,715,622 - +2.2
4,715,625 + -0.2
4,715,649 + -1.1
4,715,650 - -2.0
4,715,771 + -1.4
4,715,853 + CA264_20460 0.29 -1.6
4,715,892 - CA264_20460 0.40 +1.3
4,715,912 + CA264_20460 0.45 -0.3
4,715,913 - CA264_20460 0.45 -0.4
4,716,029 + CA264_20460 0.76 +1.9
4,716,029 + CA264_20460 0.76 +1.2
4,716,030 - CA264_20460 0.77 +1.8
4,716,105 - -0.5
4,716,139 - +0.9
4,716,257 + -3.0
4,716,307 + -0.4
4,716,312 + +1.2
4,716,408 - CA264_20465 0.13 -1.6
4,716,410 + CA264_20465 0.14 -0.5

Or see this region's nucleotide sequence