Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18905

Experiment: m.b. benzoic 0.58 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_18900 and CA264_18905 are separated by 238 nucleotidesCA264_18905 and CA264_18910 are separated by 87 nucleotides CA264_18900: CA264_18900 - hypothetical protein, at 4,387,779 to 4,389,002 _18900 CA264_18905: CA264_18905 - hypothetical protein, at 4,389,241 to 4,390,026 _18905 CA264_18910: CA264_18910 - hypothetical protein, at 4,390,114 to 4,391,625 _18910 Position (kb) 4389 4390 4391Strain fitness (log2 ratio) -2 -1 0 1 2at 4388.373 kb on + strand, within CA264_18900at 4388.373 kb on + strand, within CA264_18900at 4388.373 kb on + strand, within CA264_18900at 4388.373 kb on + strand, within CA264_18900at 4388.374 kb on + strand, within CA264_18900at 4388.374 kb on - strand, within CA264_18900at 4388.374 kb on - strand, within CA264_18900at 4388.378 kb on - strand, within CA264_18900at 4388.378 kb on - strand, within CA264_18900at 4388.466 kb on - strand, within CA264_18900at 4388.504 kb on - strand, within CA264_18900at 4388.504 kb on - strand, within CA264_18900at 4388.563 kb on + strand, within CA264_18900at 4388.564 kb on - strand, within CA264_18900at 4388.564 kb on - strand, within CA264_18900at 4388.564 kb on - strand, within CA264_18900at 4388.713 kb on - strand, within CA264_18900at 4388.729 kb on - strand, within CA264_18900at 4388.742 kb on + strand, within CA264_18900at 4388.743 kb on - strand, within CA264_18900at 4388.767 kb on + strand, within CA264_18900at 4388.785 kb on + strand, within CA264_18900at 4388.786 kb on - strand, within CA264_18900at 4388.825 kb on + strand, within CA264_18900at 4388.826 kb on - strand, within CA264_18900at 4388.863 kb on + strand, within CA264_18900at 4388.863 kb on + strand, within CA264_18900at 4388.863 kb on + strand, within CA264_18900at 4388.864 kb on - strand, within CA264_18900at 4388.949 kb on - strandat 4388.949 kb on - strandat 4388.979 kb on - strandat 4388.981 kb on - strandat 4388.981 kb on - strandat 4388.981 kb on - strandat 4388.986 kb on - strandat 4389.105 kb on + strandat 4389.106 kb on - strandat 4389.106 kb on - strandat 4389.111 kb on - strandat 4389.126 kb on + strandat 4389.127 kb on - strandat 4389.158 kb on + strandat 4389.159 kb on - strandat 4389.240 kb on + strandat 4389.241 kb on - strandat 4389.363 kb on - strand, within CA264_18905at 4389.391 kb on + strand, within CA264_18905at 4389.415 kb on + strand, within CA264_18905at 4389.544 kb on + strand, within CA264_18905at 4389.544 kb on + strand, within CA264_18905at 4389.545 kb on - strand, within CA264_18905at 4389.546 kb on + strand, within CA264_18905at 4389.546 kb on + strand, within CA264_18905at 4389.547 kb on - strand, within CA264_18905at 4389.590 kb on + strand, within CA264_18905at 4389.591 kb on - strand, within CA264_18905at 4389.613 kb on + strand, within CA264_18905at 4389.614 kb on - strand, within CA264_18905at 4389.614 kb on - strand, within CA264_18905at 4389.646 kb on + strand, within CA264_18905at 4389.646 kb on + strand, within CA264_18905at 4389.646 kb on + strand, within CA264_18905at 4389.647 kb on - strand, within CA264_18905at 4389.686 kb on + strand, within CA264_18905at 4389.800 kb on - strand, within CA264_18905at 4389.800 kb on - strand, within CA264_18905at 4389.801 kb on + strand, within CA264_18905at 4389.802 kb on - strand, within CA264_18905at 4389.802 kb on - strand, within CA264_18905at 4389.804 kb on + strand, within CA264_18905at 4389.804 kb on + strand, within CA264_18905at 4389.805 kb on - strand, within CA264_18905at 4389.805 kb on - strand, within CA264_18905at 4389.809 kb on - strand, within CA264_18905at 4389.809 kb on - strand, within CA264_18905at 4389.844 kb on - strand, within CA264_18905at 4389.947 kb on - strand, within CA264_18905at 4390.025 kb on - strandat 4390.109 kb on + strandat 4390.109 kb on + strandat 4390.111 kb on + strandat 4390.111 kb on + strandat 4390.111 kb on + strandat 4390.112 kb on - strandat 4390.115 kb on + strandat 4390.116 kb on - strandat 4390.116 kb on - strandat 4390.126 kb on + strandat 4390.153 kb on - strandat 4390.153 kb on - strandat 4390.169 kb on + strandat 4390.170 kb on - strandat 4390.188 kb on - strandat 4390.188 kb on - strandat 4390.319 kb on - strand, within CA264_18910at 4390.319 kb on - strand, within CA264_18910at 4390.355 kb on + strand, within CA264_18910at 4390.356 kb on - strand, within CA264_18910at 4390.426 kb on - strand, within CA264_18910at 4390.434 kb on + strand, within CA264_18910at 4390.486 kb on - strand, within CA264_18910at 4390.514 kb on + strand, within CA264_18910at 4390.515 kb on - strand, within CA264_18910at 4390.545 kb on - strand, within CA264_18910at 4390.568 kb on + strand, within CA264_18910at 4390.579 kb on + strand, within CA264_18910at 4390.580 kb on - strand, within CA264_18910at 4390.584 kb on + strand, within CA264_18910at 4390.585 kb on - strand, within CA264_18910at 4390.591 kb on + strand, within CA264_18910at 4390.608 kb on - strand, within CA264_18910at 4390.887 kb on + strand, within CA264_18910at 4390.892 kb on - strand, within CA264_18910at 4390.892 kb on - strand, within CA264_18910at 4390.892 kb on - strand, within CA264_18910

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.58 mg/ml
remove
4,388,373 + CA264_18900 0.49 -0.8
4,388,373 + CA264_18900 0.49 +0.2
4,388,373 + CA264_18900 0.49 -0.3
4,388,373 + CA264_18900 0.49 +0.3
4,388,374 + CA264_18900 0.49 -0.8
4,388,374 - CA264_18900 0.49 +0.4
4,388,374 - CA264_18900 0.49 -0.4
4,388,378 - CA264_18900 0.49 +0.6
4,388,378 - CA264_18900 0.49 -0.3
4,388,466 - CA264_18900 0.56 +1.0
4,388,504 - CA264_18900 0.59 -0.5
4,388,504 - CA264_18900 0.59 -0.2
4,388,563 + CA264_18900 0.64 -0.9
4,388,564 - CA264_18900 0.64 +0.2
4,388,564 - CA264_18900 0.64 +0.2
4,388,564 - CA264_18900 0.64 +1.7
4,388,713 - CA264_18900 0.76 -0.9
4,388,729 - CA264_18900 0.78 -0.1
4,388,742 + CA264_18900 0.79 +0.2
4,388,743 - CA264_18900 0.79 +0.1
4,388,767 + CA264_18900 0.81 +1.2
4,388,785 + CA264_18900 0.82 -0.7
4,388,786 - CA264_18900 0.82 +0.3
4,388,825 + CA264_18900 0.85 -2.7
4,388,826 - CA264_18900 0.86 -0.1
4,388,863 + CA264_18900 0.89 +0.0
4,388,863 + CA264_18900 0.89 +1.2
4,388,863 + CA264_18900 0.89 +1.0
4,388,864 - CA264_18900 0.89 -0.8
4,388,949 - -1.9
4,388,949 - -0.1
4,388,979 - -0.6
4,388,981 - -0.1
4,388,981 - +0.9
4,388,981 - -0.2
4,388,986 - +0.5
4,389,105 + +1.2
4,389,106 - +0.2
4,389,106 - +0.9
4,389,111 - -0.7
4,389,126 + +0.0
4,389,127 - -0.0
4,389,158 + +0.7
4,389,159 - +0.9
4,389,240 + -0.8
4,389,241 - +2.0
4,389,363 - CA264_18905 0.16 -0.3
4,389,391 + CA264_18905 0.19 -0.1
4,389,415 + CA264_18905 0.22 -0.1
4,389,544 + CA264_18905 0.39 +0.2
4,389,544 + CA264_18905 0.39 +0.6
4,389,545 - CA264_18905 0.39 +0.6
4,389,546 + CA264_18905 0.39 +0.0
4,389,546 + CA264_18905 0.39 -0.2
4,389,547 - CA264_18905 0.39 -1.6
4,389,590 + CA264_18905 0.44 +2.2
4,389,591 - CA264_18905 0.45 +2.2
4,389,613 + CA264_18905 0.47 -0.5
4,389,614 - CA264_18905 0.47 +0.1
4,389,614 - CA264_18905 0.47 +0.3
4,389,646 + CA264_18905 0.52 -0.0
4,389,646 + CA264_18905 0.52 -0.0
4,389,646 + CA264_18905 0.52 +0.0
4,389,647 - CA264_18905 0.52 -0.4
4,389,686 + CA264_18905 0.57 +0.4
4,389,800 - CA264_18905 0.71 -0.1
4,389,800 - CA264_18905 0.71 +0.2
4,389,801 + CA264_18905 0.71 +0.0
4,389,802 - CA264_18905 0.71 -0.9
4,389,802 - CA264_18905 0.71 +0.6
4,389,804 + CA264_18905 0.72 -0.3
4,389,804 + CA264_18905 0.72 -0.3
4,389,805 - CA264_18905 0.72 -0.2
4,389,805 - CA264_18905 0.72 +1.2
4,389,809 - CA264_18905 0.72 -1.1
4,389,809 - CA264_18905 0.72 -1.3
4,389,844 - CA264_18905 0.77 +0.4
4,389,947 - CA264_18905 0.90 +0.2
4,390,025 - +1.8
4,390,109 + -0.2
4,390,109 + -0.4
4,390,111 + -0.4
4,390,111 + +0.8
4,390,111 + +0.0
4,390,112 - -1.2
4,390,115 + +0.4
4,390,116 - +0.4
4,390,116 - +0.3
4,390,126 + -0.9
4,390,153 - +0.2
4,390,153 - +0.7
4,390,169 + -0.3
4,390,170 - -0.4
4,390,188 - +1.7
4,390,188 - -1.2
4,390,319 - CA264_18910 0.14 -0.1
4,390,319 - CA264_18910 0.14 -0.2
4,390,355 + CA264_18910 0.16 +0.0
4,390,356 - CA264_18910 0.16 -1.0
4,390,426 - CA264_18910 0.21 +0.0
4,390,434 + CA264_18910 0.21 +0.0
4,390,486 - CA264_18910 0.25 -0.3
4,390,514 + CA264_18910 0.26 +1.2
4,390,515 - CA264_18910 0.27 +0.4
4,390,545 - CA264_18910 0.29 -0.5
4,390,568 + CA264_18910 0.30 -0.7
4,390,579 + CA264_18910 0.31 -0.8
4,390,580 - CA264_18910 0.31 -0.7
4,390,584 + CA264_18910 0.31 -0.6
4,390,585 - CA264_18910 0.31 -0.3
4,390,591 + CA264_18910 0.32 -0.9
4,390,608 - CA264_18910 0.33 -0.2
4,390,887 + CA264_18910 0.51 +0.8
4,390,892 - CA264_18910 0.51 -0.3
4,390,892 - CA264_18910 0.51 -0.6
4,390,892 - CA264_18910 0.51 -0.2

Or see this region's nucleotide sequence