Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_17110

Experiment: m.b. benzoic 0.58 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_17105 and CA264_17110 are separated by 55 nucleotidesCA264_17110 and CA264_17115 are separated by 119 nucleotides CA264_17105: CA264_17105 - mechanosensitive ion channel protein MscS, at 3,979,786 to 3,980,718 _17105 CA264_17110: CA264_17110 - radical SAM protein, at 3,980,774 to 3,981,796 _17110 CA264_17115: CA264_17115 - hypothetical protein, at 3,981,916 to 3,983,106 _17115 Position (kb) 3980 3981 3982Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3979.855 kb on + strandat 3979.873 kb on + strandat 3979.874 kb on - strandat 3979.876 kb on - strandat 3979.974 kb on - strand, within CA264_17105at 3979.974 kb on - strand, within CA264_17105at 3979.974 kb on - strand, within CA264_17105at 3979.974 kb on - strand, within CA264_17105at 3979.974 kb on - strand, within CA264_17105at 3980.013 kb on + strand, within CA264_17105at 3980.045 kb on + strand, within CA264_17105at 3980.045 kb on + strand, within CA264_17105at 3980.046 kb on - strand, within CA264_17105at 3980.046 kb on - strand, within CA264_17105at 3980.046 kb on - strand, within CA264_17105at 3980.046 kb on - strand, within CA264_17105at 3980.102 kb on - strand, within CA264_17105at 3980.149 kb on + strand, within CA264_17105at 3980.161 kb on + strand, within CA264_17105at 3980.162 kb on - strand, within CA264_17105at 3980.162 kb on - strand, within CA264_17105at 3980.298 kb on - strand, within CA264_17105at 3980.504 kb on + strand, within CA264_17105at 3980.598 kb on - strand, within CA264_17105at 3980.718 kb on + strandat 3980.719 kb on - strandat 3980.719 kb on - strandat 3980.721 kb on - strandat 3980.746 kb on - strandat 3980.801 kb on - strandat 3980.819 kb on + strandat 3980.879 kb on + strand, within CA264_17110at 3980.879 kb on + strand, within CA264_17110at 3980.919 kb on + strand, within CA264_17110at 3981.020 kb on + strand, within CA264_17110at 3981.021 kb on - strand, within CA264_17110at 3981.028 kb on - strand, within CA264_17110at 3981.060 kb on + strand, within CA264_17110at 3981.061 kb on - strand, within CA264_17110at 3981.164 kb on + strand, within CA264_17110at 3981.316 kb on - strand, within CA264_17110at 3981.316 kb on - strand, within CA264_17110at 3981.316 kb on - strand, within CA264_17110at 3981.338 kb on + strand, within CA264_17110at 3981.340 kb on + strand, within CA264_17110at 3981.341 kb on - strand, within CA264_17110at 3981.344 kb on + strand, within CA264_17110at 3981.451 kb on - strand, within CA264_17110at 3981.484 kb on - strand, within CA264_17110at 3981.513 kb on + strand, within CA264_17110at 3981.659 kb on - strand, within CA264_17110at 3981.709 kb on - strandat 3981.713 kb on - strandat 3981.782 kb on + strandat 3981.782 kb on + strandat 3981.798 kb on + strandat 3981.798 kb on + strandat 3981.799 kb on - strandat 3981.874 kb on + strandat 3981.880 kb on - strandat 3981.881 kb on + strandat 3981.884 kb on + strandat 3981.884 kb on + strandat 3981.884 kb on + strandat 3981.937 kb on + strandat 3981.938 kb on - strandat 3981.938 kb on - strandat 3981.977 kb on + strandat 3981.985 kb on + strandat 3981.985 kb on + strandat 3981.986 kb on - strandat 3981.986 kb on - strandat 3981.996 kb on + strandat 3981.997 kb on - strandat 3982.297 kb on - strand, within CA264_17115at 3982.370 kb on + strand, within CA264_17115at 3982.390 kb on + strand, within CA264_17115at 3982.390 kb on + strand, within CA264_17115at 3982.391 kb on - strand, within CA264_17115at 3982.391 kb on - strand, within CA264_17115at 3982.451 kb on - strand, within CA264_17115at 3982.451 kb on - strand, within CA264_17115at 3982.451 kb on - strand, within CA264_17115at 3982.455 kb on - strand, within CA264_17115at 3982.745 kb on + strand, within CA264_17115at 3982.746 kb on - strand, within CA264_17115at 3982.746 kb on - strand, within CA264_17115at 3982.763 kb on + strand, within CA264_17115at 3982.763 kb on + strand, within CA264_17115at 3982.764 kb on - strand, within CA264_17115at 3982.764 kb on - strand, within CA264_17115at 3982.764 kb on - strand, within CA264_17115at 3982.796 kb on + strand, within CA264_17115

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.58 mg/ml
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3,979,855 + -0.1
3,979,873 + -0.7
3,979,874 - -0.2
3,979,876 - +0.2
3,979,974 - CA264_17105 0.20 +0.5
3,979,974 - CA264_17105 0.20 -1.4
3,979,974 - CA264_17105 0.20 -0.2
3,979,974 - CA264_17105 0.20 +0.1
3,979,974 - CA264_17105 0.20 -0.1
3,980,013 + CA264_17105 0.24 -1.3
3,980,045 + CA264_17105 0.28 -1.0
3,980,045 + CA264_17105 0.28 -1.9
3,980,046 - CA264_17105 0.28 -0.1
3,980,046 - CA264_17105 0.28 +0.3
3,980,046 - CA264_17105 0.28 -2.1
3,980,046 - CA264_17105 0.28 +0.1
3,980,102 - CA264_17105 0.34 -0.7
3,980,149 + CA264_17105 0.39 -0.8
3,980,161 + CA264_17105 0.40 -1.0
3,980,162 - CA264_17105 0.40 +0.1
3,980,162 - CA264_17105 0.40 +0.1
3,980,298 - CA264_17105 0.55 -0.0
3,980,504 + CA264_17105 0.77 -0.5
3,980,598 - CA264_17105 0.87 -0.1
3,980,718 + +0.4
3,980,719 - +0.3
3,980,719 - +0.2
3,980,721 - +1.8
3,980,746 - -0.3
3,980,801 - -2.9
3,980,819 + +0.5
3,980,879 + CA264_17110 0.10 -0.2
3,980,879 + CA264_17110 0.10 -0.1
3,980,919 + CA264_17110 0.14 -0.0
3,981,020 + CA264_17110 0.24 -1.4
3,981,021 - CA264_17110 0.24 -1.0
3,981,028 - CA264_17110 0.25 -1.5
3,981,060 + CA264_17110 0.28 -1.3
3,981,061 - CA264_17110 0.28 -2.3
3,981,164 + CA264_17110 0.38 -0.9
3,981,316 - CA264_17110 0.53 -1.0
3,981,316 - CA264_17110 0.53 -2.7
3,981,316 - CA264_17110 0.53 -1.5
3,981,338 + CA264_17110 0.55 +1.3
3,981,340 + CA264_17110 0.55 -0.6
3,981,341 - CA264_17110 0.55 -1.7
3,981,344 + CA264_17110 0.56 -1.6
3,981,451 - CA264_17110 0.66 -1.3
3,981,484 - CA264_17110 0.69 -0.3
3,981,513 + CA264_17110 0.72 -1.1
3,981,659 - CA264_17110 0.87 -0.9
3,981,709 - -0.5
3,981,713 - -2.0
3,981,782 + +0.4
3,981,782 + -0.2
3,981,798 + +0.9
3,981,798 + +0.4
3,981,799 - -0.7
3,981,874 + -0.4
3,981,880 - +0.9
3,981,881 + -0.6
3,981,884 + +1.3
3,981,884 + +0.3
3,981,884 + -0.9
3,981,937 + -2.9
3,981,938 - -0.7
3,981,938 - -0.6
3,981,977 + -0.8
3,981,985 + +0.6
3,981,985 + +0.5
3,981,986 - +0.3
3,981,986 - -0.4
3,981,996 + -0.5
3,981,997 - -0.3
3,982,297 - CA264_17115 0.32 +0.4
3,982,370 + CA264_17115 0.38 -0.7
3,982,390 + CA264_17115 0.40 +1.7
3,982,390 + CA264_17115 0.40 -0.3
3,982,391 - CA264_17115 0.40 +1.7
3,982,391 - CA264_17115 0.40 +0.3
3,982,451 - CA264_17115 0.45 +1.3
3,982,451 - CA264_17115 0.45 +1.1
3,982,451 - CA264_17115 0.45 +0.9
3,982,455 - CA264_17115 0.45 +1.3
3,982,745 + CA264_17115 0.70 +1.3
3,982,746 - CA264_17115 0.70 -0.4
3,982,746 - CA264_17115 0.70 +0.3
3,982,763 + CA264_17115 0.71 -1.2
3,982,763 + CA264_17115 0.71 -0.3
3,982,764 - CA264_17115 0.71 -0.1
3,982,764 - CA264_17115 0.71 -0.6
3,982,764 - CA264_17115 0.71 -0.1
3,982,796 + CA264_17115 0.74 -0.8

Or see this region's nucleotide sequence