Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_11995

Experiment: m.b. benzoic 0.58 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_11985 and CA264_11990 are separated by 140 nucleotidesCA264_11990 and CA264_11995 are separated by 90 nucleotidesCA264_11995 and CA264_12000 are separated by 268 nucleotides CA264_11985: CA264_11985 - dipeptidase E, at 2,784,783 to 2,785,502 _11985 CA264_11990: CA264_11990 - hypothetical protein, at 2,785,643 to 2,785,903 _11990 CA264_11995: CA264_11995 - hypothetical protein, at 2,785,994 to 2,786,254 _11995 CA264_12000: CA264_12000 - MBL fold metallo-hydrolase, at 2,786,523 to 2,787,620 _12000 Position (kb) 2785 2786 2787Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2785.147 kb on + strand, within CA264_11985at 2785.148 kb on - strand, within CA264_11985at 2785.194 kb on - strand, within CA264_11985at 2785.227 kb on - strand, within CA264_11985at 2785.227 kb on - strand, within CA264_11985at 2785.348 kb on + strand, within CA264_11985at 2785.389 kb on - strand, within CA264_11985at 2785.425 kb on + strand, within CA264_11985at 2785.486 kb on - strandat 2785.486 kb on - strandat 2785.488 kb on + strandat 2785.503 kb on - strandat 2785.585 kb on + strandat 2785.633 kb on + strandat 2785.644 kb on + strandat 2785.692 kb on + strand, within CA264_11990at 2785.744 kb on + strand, within CA264_11990at 2785.745 kb on - strand, within CA264_11990at 2785.745 kb on - strand, within CA264_11990at 2785.753 kb on - strand, within CA264_11990at 2785.805 kb on - strand, within CA264_11990at 2785.833 kb on + strand, within CA264_11990at 2785.834 kb on - strand, within CA264_11990at 2785.911 kb on + strandat 2785.911 kb on + strandat 2785.912 kb on - strandat 2785.912 kb on - strandat 2785.912 kb on - strandat 2785.916 kb on - strandat 2785.963 kb on + strandat 2785.966 kb on - strandat 2785.966 kb on - strandat 2786.116 kb on + strand, within CA264_11995at 2786.146 kb on - strand, within CA264_11995at 2786.226 kb on + strand, within CA264_11995at 2786.226 kb on + strand, within CA264_11995at 2786.227 kb on - strand, within CA264_11995at 2786.243 kb on + strandat 2786.254 kb on + strandat 2786.257 kb on + strandat 2786.294 kb on + strandat 2786.294 kb on + strandat 2786.316 kb on + strandat 2786.321 kb on - strandat 2786.364 kb on + strandat 2786.364 kb on + strandat 2786.364 kb on + strandat 2786.365 kb on - strandat 2786.365 kb on - strandat 2786.365 kb on - strandat 2786.365 kb on - strandat 2786.415 kb on - strandat 2786.419 kb on + strandat 2786.427 kb on + strandat 2786.439 kb on - strandat 2786.460 kb on + strandat 2786.502 kb on - strandat 2786.502 kb on - strandat 2786.503 kb on + strandat 2786.504 kb on - strandat 2786.504 kb on - strandat 2786.504 kb on - strandat 2786.509 kb on - strandat 2786.512 kb on - strandat 2786.522 kb on + strandat 2786.657 kb on - strand, within CA264_12000at 2786.743 kb on + strand, within CA264_12000at 2786.744 kb on - strand, within CA264_12000at 2786.744 kb on - strand, within CA264_12000at 2786.744 kb on - strand, within CA264_12000at 2786.815 kb on - strand, within CA264_12000at 2786.838 kb on + strand, within CA264_12000at 2786.838 kb on + strand, within CA264_12000at 2786.839 kb on - strand, within CA264_12000at 2786.839 kb on - strand, within CA264_12000at 2786.840 kb on + strand, within CA264_12000at 2786.882 kb on - strand, within CA264_12000at 2786.901 kb on + strand, within CA264_12000at 2786.902 kb on - strand, within CA264_12000at 2786.902 kb on - strand, within CA264_12000at 2786.902 kb on - strand, within CA264_12000at 2786.902 kb on - strand, within CA264_12000at 2786.930 kb on + strand, within CA264_12000at 2786.939 kb on + strand, within CA264_12000at 2787.137 kb on - strand, within CA264_12000at 2787.154 kb on - strand, within CA264_12000at 2787.158 kb on + strand, within CA264_12000at 2787.159 kb on - strand, within CA264_12000at 2787.201 kb on + strand, within CA264_12000

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.58 mg/ml
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2,785,147 + CA264_11985 0.51 +0.6
2,785,148 - CA264_11985 0.51 +1.0
2,785,194 - CA264_11985 0.57 -0.3
2,785,227 - CA264_11985 0.62 +0.5
2,785,227 - CA264_11985 0.62 +0.2
2,785,348 + CA264_11985 0.78 -0.6
2,785,389 - CA264_11985 0.84 +0.1
2,785,425 + CA264_11985 0.89 +0.0
2,785,486 - +1.0
2,785,486 - -0.6
2,785,488 + -0.5
2,785,503 - -2.3
2,785,585 + +0.3
2,785,633 + -2.0
2,785,644 + -0.9
2,785,692 + CA264_11990 0.19 -0.3
2,785,744 + CA264_11990 0.39 +0.2
2,785,745 - CA264_11990 0.39 -0.3
2,785,745 - CA264_11990 0.39 -0.1
2,785,753 - CA264_11990 0.42 +1.5
2,785,805 - CA264_11990 0.62 +1.0
2,785,833 + CA264_11990 0.73 +0.4
2,785,834 - CA264_11990 0.73 +0.4
2,785,911 + -0.5
2,785,911 + +2.0
2,785,912 - -0.7
2,785,912 - -0.7
2,785,912 - -0.2
2,785,916 - +0.2
2,785,963 + -0.0
2,785,966 - +0.7
2,785,966 - +1.5
2,786,116 + CA264_11995 0.47 -0.7
2,786,146 - CA264_11995 0.58 -0.6
2,786,226 + CA264_11995 0.89 +0.5
2,786,226 + CA264_11995 0.89 -0.4
2,786,227 - CA264_11995 0.89 -1.6
2,786,243 + +0.5
2,786,254 + -0.5
2,786,257 + +1.0
2,786,294 + +1.0
2,786,294 + -2.8
2,786,316 + +0.2
2,786,321 - -0.9
2,786,364 + -0.8
2,786,364 + -1.2
2,786,364 + -2.2
2,786,365 - -1.0
2,786,365 - -1.6
2,786,365 - -1.0
2,786,365 - -1.0
2,786,415 - -0.5
2,786,419 + -0.1
2,786,427 + +0.5
2,786,439 - +0.0
2,786,460 + -0.6
2,786,502 - +0.1
2,786,502 - +0.2
2,786,503 + -1.6
2,786,504 - -1.8
2,786,504 - -0.9
2,786,504 - -1.6
2,786,509 - +1.0
2,786,512 - -1.3
2,786,522 + +0.2
2,786,657 - CA264_12000 0.12 -0.4
2,786,743 + CA264_12000 0.20 +1.0
2,786,744 - CA264_12000 0.20 -1.0
2,786,744 - CA264_12000 0.20 -1.4
2,786,744 - CA264_12000 0.20 -0.8
2,786,815 - CA264_12000 0.27 -0.2
2,786,838 + CA264_12000 0.29 -0.5
2,786,838 + CA264_12000 0.29 -0.6
2,786,839 - CA264_12000 0.29 +2.6
2,786,839 - CA264_12000 0.29 +1.0
2,786,840 + CA264_12000 0.29 +0.1
2,786,882 - CA264_12000 0.33 -0.4
2,786,901 + CA264_12000 0.34 +1.0
2,786,902 - CA264_12000 0.35 -0.7
2,786,902 - CA264_12000 0.35 -0.7
2,786,902 - CA264_12000 0.35 +0.0
2,786,902 - CA264_12000 0.35 -0.2
2,786,930 + CA264_12000 0.37 +1.2
2,786,939 + CA264_12000 0.38 +0.1
2,787,137 - CA264_12000 0.56 +1.3
2,787,154 - CA264_12000 0.57 -1.1
2,787,158 + CA264_12000 0.58 -0.3
2,787,159 - CA264_12000 0.58 +1.2
2,787,201 + CA264_12000 0.62 +0.2

Or see this region's nucleotide sequence