Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_11140

Experiment: m.b. benzoic 0.58 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_11130 and CA264_11135 are separated by 31 nucleotidesCA264_11135 and CA264_11140 are separated by 266 nucleotidesCA264_11140 and CA264_11145 overlap by 8 nucleotides CA264_11130: CA264_11130 - mechanosensitive ion channel protein MscS, at 2,570,586 to 2,571,674 _11130 CA264_11135: CA264_11135 - DUF2179 domain-containing protein, at 2,571,706 to 2,572,305 _11135 CA264_11140: CA264_11140 - 1,4-alpha-glucan branching enzyme, at 2,572,572 to 2,574,899 _11140 CA264_11145: CA264_11145 - maltose alpha-D-glucosyltransferase, at 2,574,892 to 2,578,227 _11145 Position (kb) 2572 2573 2574 2575Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2571.613 kb on + strandat 2571.618 kb on - strandat 2571.699 kb on - strandat 2571.928 kb on + strandat 2571.928 kb on + strand, within CA264_11135at 2571.929 kb on - strand, within CA264_11135at 2572.021 kb on - strand, within CA264_11135at 2572.116 kb on + strand, within CA264_11135at 2572.264 kb on - strandat 2572.264 kb on - strandat 2572.303 kb on + strandat 2572.304 kb on - strandat 2572.304 kb on - strandat 2572.354 kb on - strandat 2572.368 kb on + strandat 2572.386 kb on + strandat 2572.387 kb on - strandat 2572.391 kb on - strandat 2572.392 kb on + strandat 2572.392 kb on + strandat 2572.392 kb on + strandat 2572.393 kb on - strandat 2572.393 kb on - strandat 2572.393 kb on - strandat 2572.448 kb on + strandat 2572.478 kb on + strandat 2572.485 kb on + strandat 2572.503 kb on + strandat 2572.506 kb on - strandat 2572.506 kb on - strandat 2572.510 kb on + strandat 2572.511 kb on - strandat 2572.615 kb on - strandat 2572.676 kb on + strandat 2572.677 kb on - strandat 2572.677 kb on - strandat 2572.868 kb on - strand, within CA264_11140at 2572.868 kb on - strand, within CA264_11140at 2572.930 kb on + strand, within CA264_11140at 2572.942 kb on - strand, within CA264_11140at 2572.962 kb on + strand, within CA264_11140at 2572.976 kb on - strand, within CA264_11140at 2573.087 kb on - strand, within CA264_11140at 2573.104 kb on - strand, within CA264_11140at 2573.216 kb on - strand, within CA264_11140at 2573.216 kb on - strand, within CA264_11140at 2573.219 kb on + strand, within CA264_11140at 2573.219 kb on + strand, within CA264_11140at 2573.219 kb on + strand, within CA264_11140at 2573.219 kb on + strand, within CA264_11140at 2573.220 kb on - strand, within CA264_11140at 2573.220 kb on - strand, within CA264_11140at 2573.222 kb on + strand, within CA264_11140at 2573.225 kb on + strand, within CA264_11140at 2573.226 kb on - strand, within CA264_11140at 2573.319 kb on - strand, within CA264_11140at 2573.321 kb on + strand, within CA264_11140at 2573.426 kb on + strand, within CA264_11140at 2573.427 kb on - strand, within CA264_11140at 2573.519 kb on - strand, within CA264_11140at 2573.627 kb on + strand, within CA264_11140at 2573.628 kb on - strand, within CA264_11140at 2573.635 kb on + strand, within CA264_11140at 2573.636 kb on - strand, within CA264_11140at 2573.636 kb on - strand, within CA264_11140at 2574.019 kb on + strand, within CA264_11140at 2574.020 kb on - strand, within CA264_11140at 2574.056 kb on + strand, within CA264_11140at 2574.057 kb on - strand, within CA264_11140at 2574.057 kb on - strand, within CA264_11140at 2574.091 kb on + strand, within CA264_11140at 2574.173 kb on - strand, within CA264_11140at 2574.182 kb on - strand, within CA264_11140at 2574.200 kb on - strand, within CA264_11140at 2574.200 kb on - strand, within CA264_11140at 2574.205 kb on + strand, within CA264_11140at 2574.206 kb on - strand, within CA264_11140at 2574.206 kb on - strand, within CA264_11140at 2574.355 kb on + strand, within CA264_11140at 2574.355 kb on + strand, within CA264_11140at 2574.356 kb on - strand, within CA264_11140at 2574.439 kb on + strand, within CA264_11140at 2574.448 kb on + strand, within CA264_11140at 2574.448 kb on + strand, within CA264_11140at 2574.449 kb on - strand, within CA264_11140at 2574.469 kb on + strand, within CA264_11140at 2574.674 kb on + strandat 2574.674 kb on + strandat 2574.920 kb on + strandat 2574.974 kb on + strandat 2575.091 kb on + strandat 2575.106 kb on + strandat 2575.107 kb on - strandat 2575.112 kb on + strandat 2575.113 kb on - strandat 2575.139 kb on + strandat 2575.185 kb on + strandat 2575.186 kb on - strandat 2575.298 kb on + strand, within CA264_11145at 2575.338 kb on - strand, within CA264_11145at 2575.338 kb on - strand, within CA264_11145at 2575.464 kb on + strand, within CA264_11145at 2575.563 kb on + strand, within CA264_11145at 2575.563 kb on + strand, within CA264_11145at 2575.682 kb on - strand, within CA264_11145at 2575.849 kb on - strand, within CA264_11145

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.58 mg/ml
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2,571,613 + -1.1
2,571,618 - -0.1
2,571,699 - -0.3
2,571,928 + +1.5
2,571,928 + CA264_11135 0.37 +0.8
2,571,929 - CA264_11135 0.37 +0.3
2,572,021 - CA264_11135 0.53 +1.2
2,572,116 + CA264_11135 0.68 -0.4
2,572,264 - -0.5
2,572,264 - +0.7
2,572,303 + -0.8
2,572,304 - +2.3
2,572,304 - -0.1
2,572,354 - -0.5
2,572,368 + +0.4
2,572,386 + +1.3
2,572,387 - -0.4
2,572,391 - -1.1
2,572,392 + -0.2
2,572,392 + +1.3
2,572,392 + +1.2
2,572,393 - +0.5
2,572,393 - -0.3
2,572,393 - -0.5
2,572,448 + +0.1
2,572,478 + -0.4
2,572,485 + -0.1
2,572,503 + +1.5
2,572,506 - -1.0
2,572,506 - +0.2
2,572,510 + +0.2
2,572,511 - -0.1
2,572,615 - -0.1
2,572,676 + -1.3
2,572,677 - -1.3
2,572,677 - -0.4
2,572,868 - CA264_11140 0.13 -0.7
2,572,868 - CA264_11140 0.13 +0.5
2,572,930 + CA264_11140 0.15 -1.5
2,572,942 - CA264_11140 0.16 +0.3
2,572,962 + CA264_11140 0.17 +0.7
2,572,976 - CA264_11140 0.17 -2.8
2,573,087 - CA264_11140 0.22 -1.5
2,573,104 - CA264_11140 0.23 -0.0
2,573,216 - CA264_11140 0.28 +0.4
2,573,216 - CA264_11140 0.28 +2.3
2,573,219 + CA264_11140 0.28 -0.2
2,573,219 + CA264_11140 0.28 +0.3
2,573,219 + CA264_11140 0.28 +0.2
2,573,219 + CA264_11140 0.28 +0.3
2,573,220 - CA264_11140 0.28 -0.5
2,573,220 - CA264_11140 0.28 +0.3
2,573,222 + CA264_11140 0.28 +0.3
2,573,225 + CA264_11140 0.28 -0.9
2,573,226 - CA264_11140 0.28 -0.2
2,573,319 - CA264_11140 0.32 -0.3
2,573,321 + CA264_11140 0.32 -0.7
2,573,426 + CA264_11140 0.37 +1.3
2,573,427 - CA264_11140 0.37 -0.1
2,573,519 - CA264_11140 0.41 -2.1
2,573,627 + CA264_11140 0.45 -1.5
2,573,628 - CA264_11140 0.45 +0.1
2,573,635 + CA264_11140 0.46 +2.3
2,573,636 - CA264_11140 0.46 -1.1
2,573,636 - CA264_11140 0.46 -1.3
2,574,019 + CA264_11140 0.62 -1.4
2,574,020 - CA264_11140 0.62 -0.7
2,574,056 + CA264_11140 0.64 -1.1
2,574,057 - CA264_11140 0.64 -0.1
2,574,057 - CA264_11140 0.64 +0.1
2,574,091 + CA264_11140 0.65 -0.1
2,574,173 - CA264_11140 0.69 -0.8
2,574,182 - CA264_11140 0.69 -0.3
2,574,200 - CA264_11140 0.70 +0.4
2,574,200 - CA264_11140 0.70 -1.7
2,574,205 + CA264_11140 0.70 +0.6
2,574,206 - CA264_11140 0.70 +0.6
2,574,206 - CA264_11140 0.70 -0.9
2,574,355 + CA264_11140 0.77 +1.2
2,574,355 + CA264_11140 0.77 -0.4
2,574,356 - CA264_11140 0.77 -0.4
2,574,439 + CA264_11140 0.80 +0.4
2,574,448 + CA264_11140 0.81 -0.7
2,574,448 + CA264_11140 0.81 -1.3
2,574,449 - CA264_11140 0.81 -0.0
2,574,469 + CA264_11140 0.81 -0.7
2,574,674 + +0.3
2,574,674 + +3.3
2,574,920 + +0.7
2,574,974 + +0.2
2,575,091 + +0.1
2,575,106 + +0.4
2,575,107 - -0.3
2,575,112 + +0.6
2,575,113 - +1.5
2,575,139 + +0.5
2,575,185 + -0.9
2,575,186 - +0.3
2,575,298 + CA264_11145 0.12 +0.2
2,575,338 - CA264_11145 0.13 +0.0
2,575,338 - CA264_11145 0.13 -0.2
2,575,464 + CA264_11145 0.17 -0.2
2,575,563 + CA264_11145 0.20 +0.1
2,575,563 + CA264_11145 0.20 +0.9
2,575,682 - CA264_11145 0.24 -0.1
2,575,849 - CA264_11145 0.29 -1.4

Or see this region's nucleotide sequence