Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_11020

Experiment: m.b. benzoic 0.58 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_11015 and CA264_11020 are separated by 318 nucleotidesCA264_11020 and CA264_11025 are separated by 2 nucleotides CA264_11015: CA264_11015 - hypothetical protein, at 2,542,887 to 2,543,948 _11015 CA264_11020: CA264_11020 - PadR family transcriptional regulator, at 2,544,267 to 2,544,605 _11020 CA264_11025: CA264_11025 - hypothetical protein, at 2,544,608 to 2,547,148 _11025 Position (kb) 2544 2545Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2543.324 kb on - strand, within CA264_11015at 2543.324 kb on - strand, within CA264_11015at 2543.375 kb on + strand, within CA264_11015at 2543.376 kb on - strand, within CA264_11015at 2543.376 kb on - strand, within CA264_11015at 2543.379 kb on - strand, within CA264_11015at 2543.379 kb on - strand, within CA264_11015at 2543.449 kb on + strand, within CA264_11015at 2543.450 kb on - strand, within CA264_11015at 2543.450 kb on - strand, within CA264_11015at 2543.539 kb on + strand, within CA264_11015at 2543.590 kb on + strand, within CA264_11015at 2543.600 kb on - strand, within CA264_11015at 2543.710 kb on + strand, within CA264_11015at 2543.764 kb on + strand, within CA264_11015at 2543.764 kb on + strand, within CA264_11015at 2543.764 kb on + strand, within CA264_11015at 2543.894 kb on + strandat 2543.897 kb on - strandat 2543.995 kb on - strandat 2544.000 kb on + strandat 2544.000 kb on + strandat 2544.001 kb on - strandat 2544.001 kb on - strandat 2544.001 kb on - strandat 2544.003 kb on - strandat 2544.178 kb on + strandat 2544.252 kb on + strandat 2544.253 kb on - strandat 2544.332 kb on + strand, within CA264_11020at 2544.351 kb on + strand, within CA264_11020at 2544.352 kb on - strand, within CA264_11020at 2544.362 kb on + strand, within CA264_11020at 2544.451 kb on + strand, within CA264_11020at 2544.456 kb on + strand, within CA264_11020at 2544.456 kb on + strand, within CA264_11020at 2544.458 kb on + strand, within CA264_11020at 2544.458 kb on + strand, within CA264_11020at 2544.458 kb on + strand, within CA264_11020at 2544.458 kb on + strand, within CA264_11020at 2544.576 kb on + strandat 2544.576 kb on + strandat 2544.604 kb on - strandat 2544.621 kb on + strandat 2544.621 kb on + strandat 2544.622 kb on - strandat 2544.625 kb on + strandat 2544.625 kb on + strandat 2544.625 kb on + strandat 2544.625 kb on + strandat 2544.625 kb on + strandat 2544.626 kb on - strandat 2544.894 kb on - strand, within CA264_11025at 2544.954 kb on - strand, within CA264_11025at 2545.075 kb on - strand, within CA264_11025at 2545.129 kb on + strand, within CA264_11025at 2545.130 kb on - strand, within CA264_11025at 2545.131 kb on + strand, within CA264_11025at 2545.131 kb on + strand, within CA264_11025at 2545.131 kb on + strand, within CA264_11025at 2545.132 kb on - strand, within CA264_11025at 2545.132 kb on - strand, within CA264_11025at 2545.132 kb on - strand, within CA264_11025at 2545.136 kb on + strand, within CA264_11025at 2545.136 kb on + strand, within CA264_11025at 2545.137 kb on - strand, within CA264_11025at 2545.298 kb on - strand, within CA264_11025at 2545.298 kb on - strand, within CA264_11025at 2545.334 kb on + strand, within CA264_11025at 2545.334 kb on + strand, within CA264_11025at 2545.335 kb on - strand, within CA264_11025at 2545.369 kb on + strand, within CA264_11025at 2545.573 kb on - strand, within CA264_11025

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.58 mg/ml
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2,543,324 - CA264_11015 0.41 -2.5
2,543,324 - CA264_11015 0.41 -0.2
2,543,375 + CA264_11015 0.46 +0.4
2,543,376 - CA264_11015 0.46 +1.1
2,543,376 - CA264_11015 0.46 -0.2
2,543,379 - CA264_11015 0.46 -0.4
2,543,379 - CA264_11015 0.46 -0.6
2,543,449 + CA264_11015 0.53 -0.1
2,543,450 - CA264_11015 0.53 +0.0
2,543,450 - CA264_11015 0.53 -0.1
2,543,539 + CA264_11015 0.61 -0.7
2,543,590 + CA264_11015 0.66 +0.3
2,543,600 - CA264_11015 0.67 -0.0
2,543,710 + CA264_11015 0.77 +1.2
2,543,764 + CA264_11015 0.83 -0.8
2,543,764 + CA264_11015 0.83 -0.4
2,543,764 + CA264_11015 0.83 -1.4
2,543,894 + -0.3
2,543,897 - -3.0
2,543,995 - +1.7
2,544,000 + +0.3
2,544,000 + -0.8
2,544,001 - +0.6
2,544,001 - -0.1
2,544,001 - -2.1
2,544,003 - -0.4
2,544,178 + -0.9
2,544,252 + +1.9
2,544,253 - -0.3
2,544,332 + CA264_11020 0.19 +0.6
2,544,351 + CA264_11020 0.25 -0.1
2,544,352 - CA264_11020 0.25 +0.3
2,544,362 + CA264_11020 0.28 +0.9
2,544,451 + CA264_11020 0.54 -1.1
2,544,456 + CA264_11020 0.56 -1.5
2,544,456 + CA264_11020 0.56 +0.9
2,544,458 + CA264_11020 0.56 -2.2
2,544,458 + CA264_11020 0.56 -0.5
2,544,458 + CA264_11020 0.56 -1.1
2,544,458 + CA264_11020 0.56 -2.9
2,544,576 + -1.6
2,544,576 + -0.4
2,544,604 - +0.6
2,544,621 + -0.3
2,544,621 + +1.1
2,544,622 - -0.1
2,544,625 + -0.3
2,544,625 + -0.0
2,544,625 + +3.1
2,544,625 + -0.3
2,544,625 + +0.3
2,544,626 - -0.0
2,544,894 - CA264_11025 0.11 -0.1
2,544,954 - CA264_11025 0.14 -0.1
2,545,075 - CA264_11025 0.18 -0.7
2,545,129 + CA264_11025 0.21 -0.4
2,545,130 - CA264_11025 0.21 -0.9
2,545,131 + CA264_11025 0.21 -0.5
2,545,131 + CA264_11025 0.21 -0.7
2,545,131 + CA264_11025 0.21 +0.7
2,545,132 - CA264_11025 0.21 -0.7
2,545,132 - CA264_11025 0.21 +0.5
2,545,132 - CA264_11025 0.21 +0.6
2,545,136 + CA264_11025 0.21 -1.2
2,545,136 + CA264_11025 0.21 +1.8
2,545,137 - CA264_11025 0.21 -0.7
2,545,298 - CA264_11025 0.27 +0.2
2,545,298 - CA264_11025 0.27 +0.2
2,545,334 + CA264_11025 0.29 -0.3
2,545,334 + CA264_11025 0.29 +0.7
2,545,335 - CA264_11025 0.29 -0.2
2,545,369 + CA264_11025 0.30 +0.9
2,545,573 - CA264_11025 0.38 +0.9

Or see this region's nucleotide sequence