Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_08570

Experiment: m.b. benzoic 0.58 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_08560 and CA264_08565 are separated by 21 nucleotidesCA264_08565 and CA264_08570 are separated by 151 nucleotidesCA264_08570 and CA264_08575 are separated by 344 nucleotides CA264_08560: CA264_08560 - adenylyl-sulfate kinase, at 1,987,533 to 1,988,168 _08560 CA264_08565: CA264_08565 - 3'(2'),5'-bisphosphate nucleotidase, at 1,988,190 to 1,989,011 _08565 CA264_08570: CA264_08570 - glycogen debranching enzyme, at 1,989,163 to 1,991,295 _08570 CA264_08575: CA264_08575 - hypothetical protein, at 1,991,640 to 1,992,404 _08575 Position (kb) 1989 1990 1991 1992Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1988.167 kb on - strandat 1988.183 kb on + strandat 1988.184 kb on - strandat 1988.184 kb on - strandat 1988.187 kb on + strandat 1988.187 kb on + strandat 1988.187 kb on + strandat 1988.188 kb on - strandat 1988.188 kb on - strandat 1988.188 kb on - strandat 1988.188 kb on - strandat 1988.307 kb on + strand, within CA264_08565at 1988.307 kb on + strand, within CA264_08565at 1988.308 kb on - strand, within CA264_08565at 1988.382 kb on - strand, within CA264_08565at 1988.421 kb on - strand, within CA264_08565at 1988.548 kb on + strand, within CA264_08565at 1988.585 kb on + strand, within CA264_08565at 1988.586 kb on - strand, within CA264_08565at 1988.589 kb on + strand, within CA264_08565at 1988.589 kb on + strand, within CA264_08565at 1988.611 kb on + strand, within CA264_08565at 1988.612 kb on - strand, within CA264_08565at 1988.612 kb on - strand, within CA264_08565at 1988.613 kb on + strand, within CA264_08565at 1988.614 kb on - strand, within CA264_08565at 1988.614 kb on - strand, within CA264_08565at 1988.614 kb on - strand, within CA264_08565at 1988.616 kb on + strand, within CA264_08565at 1988.616 kb on + strand, within CA264_08565at 1988.647 kb on + strand, within CA264_08565at 1988.694 kb on - strand, within CA264_08565at 1988.753 kb on - strand, within CA264_08565at 1988.753 kb on - strand, within CA264_08565at 1988.938 kb on - strandat 1988.967 kb on + strandat 1989.002 kb on - strandat 1989.046 kb on - strandat 1989.128 kb on + strandat 1989.128 kb on + strandat 1989.128 kb on + strandat 1989.128 kb on + strandat 1989.128 kb on + strandat 1989.129 kb on - strandat 1989.149 kb on + strandat 1989.165 kb on - strandat 1989.165 kb on - strandat 1989.238 kb on + strandat 1989.239 kb on - strandat 1989.288 kb on + strandat 1989.289 kb on - strandat 1989.289 kb on - strandat 1989.306 kb on - strandat 1989.310 kb on + strandat 1989.310 kb on + strandat 1989.310 kb on + strandat 1989.311 kb on - strandat 1989.311 kb on - strandat 1989.311 kb on - strandat 1989.341 kb on + strandat 1989.362 kb on + strandat 1989.362 kb on + strandat 1989.362 kb on + strandat 1989.622 kb on + strand, within CA264_08570at 1989.623 kb on - strand, within CA264_08570at 1989.665 kb on + strand, within CA264_08570at 1989.666 kb on - strandat 1989.996 kb on + strand, within CA264_08570at 1990.023 kb on + strand, within CA264_08570at 1990.024 kb on - strand, within CA264_08570at 1990.024 kb on - strand, within CA264_08570at 1990.044 kb on - strand, within CA264_08570at 1990.054 kb on - strand, within CA264_08570at 1990.064 kb on + strand, within CA264_08570at 1990.113 kb on - strand, within CA264_08570at 1990.342 kb on - strand, within CA264_08570at 1990.358 kb on + strand, within CA264_08570at 1990.368 kb on - strand, within CA264_08570at 1990.370 kb on + strand, within CA264_08570at 1990.397 kb on + strand, within CA264_08570at 1990.398 kb on - strand, within CA264_08570at 1990.466 kb on + strand, within CA264_08570at 1990.571 kb on - strand, within CA264_08570at 1990.596 kb on + strand, within CA264_08570at 1990.596 kb on + strand, within CA264_08570at 1990.597 kb on - strand, within CA264_08570at 1990.703 kb on + strand, within CA264_08570at 1990.704 kb on - strand, within CA264_08570at 1990.736 kb on + strand, within CA264_08570at 1990.805 kb on - strand, within CA264_08570at 1990.890 kb on - strand, within CA264_08570at 1990.944 kb on + strand, within CA264_08570at 1990.972 kb on + strand, within CA264_08570at 1990.972 kb on + strand, within CA264_08570at 1990.972 kb on + strand, within CA264_08570at 1990.973 kb on - strand, within CA264_08570at 1990.985 kb on - strand, within CA264_08570at 1990.986 kb on + strand, within CA264_08570at 1990.997 kb on + strand, within CA264_08570at 1991.011 kb on + strand, within CA264_08570at 1991.105 kb on + strandat 1991.105 kb on + strandat 1991.106 kb on - strandat 1991.250 kb on + strandat 1991.287 kb on + strandat 1991.288 kb on - strandat 1991.288 kb on - strandat 1991.288 kb on - strandat 1991.288 kb on - strandat 1991.295 kb on + strandat 1991.295 kb on + strandat 1991.296 kb on - strandat 1991.298 kb on + strandat 1991.298 kb on + strandat 1991.298 kb on + strandat 1991.299 kb on - strandat 1991.299 kb on - strandat 1991.299 kb on - strandat 1991.299 kb on - strandat 1991.304 kb on + strandat 1991.305 kb on - strandat 1991.305 kb on - strandat 1991.305 kb on - strandat 1991.309 kb on - strandat 1991.314 kb on - strandat 1991.338 kb on + strandat 1991.338 kb on + strandat 1991.356 kb on + strandat 1991.357 kb on - strandat 1991.361 kb on + strandat 1991.361 kb on + strandat 1991.362 kb on - strandat 1991.362 kb on - strandat 1991.362 kb on - strandat 1991.396 kb on + strandat 1991.396 kb on + strandat 1991.478 kb on + strandat 1991.479 kb on - strandat 1991.546 kb on - strandat 1991.548 kb on - strandat 1991.559 kb on + strandat 1991.601 kb on - strandat 1991.631 kb on + strandat 1991.637 kb on - strandat 1991.642 kb on - strandat 1991.680 kb on + strandat 1991.681 kb on - strandat 1991.695 kb on - strandat 1991.743 kb on + strand, within CA264_08575at 1991.744 kb on - strand, within CA264_08575at 1991.744 kb on - strand, within CA264_08575at 1991.881 kb on + strand, within CA264_08575at 1991.882 kb on - strand, within CA264_08575at 1991.890 kb on + strand, within CA264_08575at 1991.890 kb on + strand, within CA264_08575at 1991.890 kb on + strand, within CA264_08575at 1991.890 kb on + strand, within CA264_08575at 1991.894 kb on + strand, within CA264_08575at 1991.894 kb on + strand, within CA264_08575at 1991.894 kb on + strand, within CA264_08575at 1991.894 kb on + strand, within CA264_08575at 1991.895 kb on - strand, within CA264_08575at 1991.895 kb on - strand, within CA264_08575at 1991.895 kb on - strand, within CA264_08575at 1991.895 kb on - strand, within CA264_08575at 1991.896 kb on + strand, within CA264_08575at 1991.956 kb on + strand, within CA264_08575at 1992.224 kb on - strand, within CA264_08575at 1992.229 kb on - strand, within CA264_08575at 1992.281 kb on - strand, within CA264_08575

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.58 mg/ml
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1,988,167 - -0.2
1,988,183 + -0.7
1,988,184 - -0.2
1,988,184 - +0.4
1,988,187 + +1.6
1,988,187 + -0.0
1,988,187 + +0.2
1,988,188 - +0.7
1,988,188 - -2.5
1,988,188 - +0.7
1,988,188 - -0.1
1,988,307 + CA264_08565 0.14 +0.1
1,988,307 + CA264_08565 0.14 +0.1
1,988,308 - CA264_08565 0.14 +0.4
1,988,382 - CA264_08565 0.23 -0.2
1,988,421 - CA264_08565 0.28 +0.8
1,988,548 + CA264_08565 0.44 +0.8
1,988,585 + CA264_08565 0.48 +0.1
1,988,586 - CA264_08565 0.48 +0.3
1,988,589 + CA264_08565 0.49 +0.3
1,988,589 + CA264_08565 0.49 -1.2
1,988,611 + CA264_08565 0.51 -1.7
1,988,612 - CA264_08565 0.51 -0.6
1,988,612 - CA264_08565 0.51 -0.2
1,988,613 + CA264_08565 0.51 -0.4
1,988,614 - CA264_08565 0.52 -0.3
1,988,614 - CA264_08565 0.52 -1.2
1,988,614 - CA264_08565 0.52 +1.6
1,988,616 + CA264_08565 0.52 -0.1
1,988,616 + CA264_08565 0.52 +0.4
1,988,647 + CA264_08565 0.56 -0.5
1,988,694 - CA264_08565 0.61 -0.9
1,988,753 - CA264_08565 0.68 +0.3
1,988,753 - CA264_08565 0.68 +2.8
1,988,938 - +0.0
1,988,967 + -0.3
1,989,002 - +0.3
1,989,046 - +1.0
1,989,128 + -0.7
1,989,128 + +0.5
1,989,128 + +0.1
1,989,128 + -0.7
1,989,128 + +0.0
1,989,129 - +1.2
1,989,149 + -1.0
1,989,165 - +0.2
1,989,165 - +0.1
1,989,238 + +0.5
1,989,239 - +0.0
1,989,288 + -0.5
1,989,289 - -2.1
1,989,289 - +0.2
1,989,306 - +0.8
1,989,310 + -0.7
1,989,310 + -1.7
1,989,310 + -0.4
1,989,311 - -0.3
1,989,311 - -0.2
1,989,311 - -0.2
1,989,341 + -0.1
1,989,362 + +0.1
1,989,362 + +0.8
1,989,362 + -0.4
1,989,622 + CA264_08570 0.22 +0.9
1,989,623 - CA264_08570 0.22 -0.4
1,989,665 + CA264_08570 0.24 -0.1
1,989,666 - +2.4
1,989,996 + CA264_08570 0.39 -0.1
1,990,023 + CA264_08570 0.40 -0.5
1,990,024 - CA264_08570 0.40 -1.1
1,990,024 - CA264_08570 0.40 +0.3
1,990,044 - CA264_08570 0.41 +0.1
1,990,054 - CA264_08570 0.42 +0.8
1,990,064 + CA264_08570 0.42 +0.8
1,990,113 - CA264_08570 0.45 +1.4
1,990,342 - CA264_08570 0.55 -2.2
1,990,358 + CA264_08570 0.56 +0.4
1,990,368 - CA264_08570 0.56 -0.3
1,990,370 + CA264_08570 0.57 +0.3
1,990,397 + CA264_08570 0.58 -2.0
1,990,398 - CA264_08570 0.58 +0.1
1,990,466 + CA264_08570 0.61 +1.8
1,990,571 - CA264_08570 0.66 +0.6
1,990,596 + CA264_08570 0.67 +1.6
1,990,596 + CA264_08570 0.67 +0.3
1,990,597 - CA264_08570 0.67 -0.7
1,990,703 + CA264_08570 0.72 -1.2
1,990,704 - CA264_08570 0.72 +0.4
1,990,736 + CA264_08570 0.74 +0.1
1,990,805 - CA264_08570 0.77 +0.7
1,990,890 - CA264_08570 0.81 -0.4
1,990,944 + CA264_08570 0.83 +0.3
1,990,972 + CA264_08570 0.85 -1.1
1,990,972 + CA264_08570 0.85 -0.7
1,990,972 + CA264_08570 0.85 +1.1
1,990,973 - CA264_08570 0.85 +0.2
1,990,985 - CA264_08570 0.85 -0.2
1,990,986 + CA264_08570 0.85 +0.0
1,990,997 + CA264_08570 0.86 +0.7
1,991,011 + CA264_08570 0.87 -0.2
1,991,105 + +1.0
1,991,105 + -0.7
1,991,106 - +0.1
1,991,250 + +0.0
1,991,287 + -1.5
1,991,288 - -0.3
1,991,288 - -1.5
1,991,288 - -0.4
1,991,288 - +2.4
1,991,295 + +0.5
1,991,295 + +0.2
1,991,296 - -0.2
1,991,298 + +0.1
1,991,298 + +0.0
1,991,298 + -0.3
1,991,299 - +0.6
1,991,299 - +0.5
1,991,299 - -0.9
1,991,299 - -0.4
1,991,304 + -1.0
1,991,305 - +0.4
1,991,305 - +0.1
1,991,305 - -0.7
1,991,309 - +0.3
1,991,314 - -0.5
1,991,338 + -0.5
1,991,338 + +0.8
1,991,356 + -0.0
1,991,357 - +0.1
1,991,361 + +0.7
1,991,361 + -0.2
1,991,362 - +1.8
1,991,362 - +0.8
1,991,362 - -1.0
1,991,396 + -0.6
1,991,396 + -0.6
1,991,478 + +0.5
1,991,479 - -0.3
1,991,546 - +0.3
1,991,548 - -0.0
1,991,559 + -2.2
1,991,601 - -0.6
1,991,631 + -0.2
1,991,637 - +0.5
1,991,642 - +0.2
1,991,680 + +0.6
1,991,681 - +0.0
1,991,695 - -0.2
1,991,743 + CA264_08575 0.13 -0.2
1,991,744 - CA264_08575 0.14 -0.9
1,991,744 - CA264_08575 0.14 -1.2
1,991,881 + CA264_08575 0.32 -1.0
1,991,882 - CA264_08575 0.32 +0.1
1,991,890 + CA264_08575 0.33 +0.0
1,991,890 + CA264_08575 0.33 +0.2
1,991,890 + CA264_08575 0.33 +0.5
1,991,890 + CA264_08575 0.33 -0.5
1,991,894 + CA264_08575 0.33 -0.6
1,991,894 + CA264_08575 0.33 +0.8
1,991,894 + CA264_08575 0.33 -1.0
1,991,894 + CA264_08575 0.33 +0.5
1,991,895 - CA264_08575 0.33 -0.5
1,991,895 - CA264_08575 0.33 -0.6
1,991,895 - CA264_08575 0.33 -1.5
1,991,895 - CA264_08575 0.33 +0.8
1,991,896 + CA264_08575 0.33 -0.2
1,991,956 + CA264_08575 0.41 +0.2
1,992,224 - CA264_08575 0.76 +0.4
1,992,229 - CA264_08575 0.77 +0.6
1,992,281 - CA264_08575 0.84 -0.4

Or see this region's nucleotide sequence