Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_08255

Experiment: m.b. benzoic 0.58 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_08250 and CA264_08255 are separated by 224 nucleotidesCA264_08255 and CA264_08260 are separated by 410 nucleotides CA264_08250: CA264_08250 - hypothetical protein, at 1,907,130 to 1,907,714 _08250 CA264_08255: CA264_08255 - hypothetical protein, at 1,907,939 to 1,909,021 _08255 CA264_08260: CA264_08260 - pseudouridine synthase, at 1,909,432 to 1,910,028 _08260 Position (kb) 1907 1908 1909 1910Strain fitness (log2 ratio) -2 -1 0 1 2at 1906.946 kb on + strandat 1906.997 kb on + strandat 1907.026 kb on + strandat 1907.116 kb on + strandat 1907.116 kb on + strandat 1907.116 kb on + strandat 1907.117 kb on - strandat 1907.126 kb on + strandat 1907.131 kb on + strandat 1907.131 kb on + strandat 1907.131 kb on + strandat 1907.131 kb on + strandat 1907.131 kb on + strandat 1907.140 kb on + strandat 1907.140 kb on + strandat 1907.140 kb on + strandat 1907.141 kb on - strandat 1907.143 kb on + strandat 1907.143 kb on + strandat 1907.143 kb on + strandat 1907.144 kb on - strandat 1907.225 kb on - strand, within CA264_08250at 1907.247 kb on - strand, within CA264_08250at 1907.247 kb on - strand, within CA264_08250at 1907.503 kb on + strand, within CA264_08250at 1907.506 kb on + strand, within CA264_08250at 1907.506 kb on + strand, within CA264_08250at 1907.513 kb on + strand, within CA264_08250at 1907.660 kb on - strandat 1907.660 kb on - strandat 1907.660 kb on - strandat 1907.661 kb on + strandat 1907.661 kb on + strandat 1907.662 kb on - strandat 1907.662 kb on - strandat 1907.662 kb on - strandat 1907.662 kb on - strandat 1907.679 kb on + strandat 1907.737 kb on + strandat 1907.737 kb on + strandat 1907.737 kb on + strandat 1907.738 kb on - strandat 1907.738 kb on - strandat 1907.738 kb on - strandat 1907.754 kb on + strandat 1907.755 kb on - strandat 1907.811 kb on + strandat 1907.821 kb on + strandat 1907.875 kb on - strandat 1907.894 kb on - strandat 1907.896 kb on - strandat 1907.896 kb on - strandat 1907.896 kb on - strandat 1907.901 kb on + strandat 1907.901 kb on + strandat 1907.901 kb on + strandat 1907.901 kb on + strandat 1907.901 kb on + strandat 1907.901 kb on + strandat 1907.901 kb on + strandat 1907.901 kb on + strandat 1907.902 kb on - strandat 1907.902 kb on - strandat 1907.903 kb on + strandat 1907.994 kb on + strandat 1907.995 kb on - strandat 1907.995 kb on - strandat 1908.056 kb on + strand, within CA264_08255at 1908.057 kb on - strand, within CA264_08255at 1908.151 kb on + strand, within CA264_08255at 1908.151 kb on + strand, within CA264_08255at 1908.187 kb on + strand, within CA264_08255at 1908.187 kb on + strand, within CA264_08255at 1908.187 kb on + strand, within CA264_08255at 1908.188 kb on - strand, within CA264_08255at 1908.188 kb on - strand, within CA264_08255at 1908.204 kb on - strand, within CA264_08255at 1908.261 kb on + strand, within CA264_08255at 1908.367 kb on + strand, within CA264_08255at 1908.380 kb on + strand, within CA264_08255at 1908.380 kb on + strand, within CA264_08255at 1908.380 kb on + strand, within CA264_08255at 1908.380 kb on + strand, within CA264_08255at 1908.380 kb on + strand, within CA264_08255at 1908.380 kb on + strand, within CA264_08255at 1908.380 kb on + strand, within CA264_08255at 1908.381 kb on - strand, within CA264_08255at 1908.381 kb on - strand, within CA264_08255at 1908.381 kb on - strand, within CA264_08255at 1908.457 kb on + strand, within CA264_08255at 1908.458 kb on - strand, within CA264_08255at 1908.538 kb on + strand, within CA264_08255at 1908.557 kb on + strand, within CA264_08255at 1908.617 kb on + strand, within CA264_08255at 1908.617 kb on + strand, within CA264_08255at 1908.617 kb on + strand, within CA264_08255at 1908.617 kb on + strand, within CA264_08255at 1908.618 kb on - strand, within CA264_08255at 1908.735 kb on + strand, within CA264_08255at 1908.836 kb on + strand, within CA264_08255at 1908.857 kb on + strand, within CA264_08255at 1908.858 kb on - strand, within CA264_08255at 1908.954 kb on - strandat 1908.959 kb on + strandat 1908.960 kb on - strandat 1909.105 kb on + strandat 1909.119 kb on - strandat 1909.175 kb on + strandat 1909.176 kb on - strandat 1909.177 kb on + strandat 1909.177 kb on + strandat 1909.187 kb on - strandat 1909.273 kb on + strandat 1909.274 kb on - strandat 1909.276 kb on - strandat 1909.283 kb on + strandat 1909.283 kb on + strandat 1909.285 kb on + strandat 1909.311 kb on - strandat 1909.373 kb on - strandat 1909.411 kb on + strandat 1909.412 kb on - strandat 1909.416 kb on + strandat 1909.456 kb on - strandat 1909.468 kb on + strandat 1909.469 kb on - strandat 1909.615 kb on + strand, within CA264_08260at 1909.634 kb on + strand, within CA264_08260at 1909.648 kb on + strand, within CA264_08260at 1909.649 kb on - strand, within CA264_08260at 1909.714 kb on - strand, within CA264_08260at 1909.714 kb on - strand, within CA264_08260at 1909.719 kb on - strand, within CA264_08260at 1909.732 kb on + strand, within CA264_08260at 1909.733 kb on - strand, within CA264_08260at 1909.758 kb on + strand, within CA264_08260at 1909.759 kb on - strand, within CA264_08260at 1909.759 kb on - strand, within CA264_08260at 1909.759 kb on - strand, within CA264_08260at 1909.848 kb on + strand, within CA264_08260at 1909.848 kb on + strand, within CA264_08260at 1909.976 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.58 mg/ml
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1,906,946 + -0.2
1,906,997 + -0.3
1,907,026 + -0.5
1,907,116 + +0.8
1,907,116 + +0.8
1,907,116 + -1.5
1,907,117 - +0.1
1,907,126 + +0.2
1,907,131 + -0.8
1,907,131 + -0.1
1,907,131 + +0.1
1,907,131 + -0.6
1,907,131 + +1.4
1,907,140 + -0.3
1,907,140 + -0.6
1,907,140 + +0.5
1,907,141 - -0.9
1,907,143 + +0.3
1,907,143 + +0.2
1,907,143 + +0.1
1,907,144 - -0.7
1,907,225 - CA264_08250 0.16 +0.8
1,907,247 - CA264_08250 0.20 -0.5
1,907,247 - CA264_08250 0.20 -1.4
1,907,503 + CA264_08250 0.64 +0.1
1,907,506 + CA264_08250 0.64 -0.7
1,907,506 + CA264_08250 0.64 -0.9
1,907,513 + CA264_08250 0.65 +0.2
1,907,660 - -0.3
1,907,660 - -0.5
1,907,660 - -1.1
1,907,661 + +0.1
1,907,661 + -2.0
1,907,662 - +0.6
1,907,662 - +0.3
1,907,662 - -1.8
1,907,662 - -0.0
1,907,679 + +0.4
1,907,737 + -0.5
1,907,737 + -0.2
1,907,737 + -0.8
1,907,738 - +0.8
1,907,738 - -0.2
1,907,738 - -0.8
1,907,754 + -1.1
1,907,755 - +1.1
1,907,811 + +0.2
1,907,821 + -0.5
1,907,875 - -0.1
1,907,894 - -0.8
1,907,896 - +0.3
1,907,896 - +0.1
1,907,896 - +1.5
1,907,901 + +0.9
1,907,901 + +0.1
1,907,901 + -1.5
1,907,901 + -0.4
1,907,901 + +1.4
1,907,901 + +0.5
1,907,901 + +0.2
1,907,901 + -0.3
1,907,902 - -2.0
1,907,902 - +0.3
1,907,903 + -0.5
1,907,994 + -0.0
1,907,995 - -1.3
1,907,995 - -0.3
1,908,056 + CA264_08255 0.11 -1.5
1,908,057 - CA264_08255 0.11 -1.8
1,908,151 + CA264_08255 0.20 +0.1
1,908,151 + CA264_08255 0.20 +0.4
1,908,187 + CA264_08255 0.23 +0.1
1,908,187 + CA264_08255 0.23 -0.8
1,908,187 + CA264_08255 0.23 -0.6
1,908,188 - CA264_08255 0.23 -0.7
1,908,188 - CA264_08255 0.23 -0.5
1,908,204 - CA264_08255 0.24 -0.3
1,908,261 + CA264_08255 0.30 +0.1
1,908,367 + CA264_08255 0.40 +2.4
1,908,380 + CA264_08255 0.41 -0.8
1,908,380 + CA264_08255 0.41 -0.5
1,908,380 + CA264_08255 0.41 +0.2
1,908,380 + CA264_08255 0.41 -0.7
1,908,380 + CA264_08255 0.41 -0.4
1,908,380 + CA264_08255 0.41 -0.0
1,908,380 + CA264_08255 0.41 -0.9
1,908,381 - CA264_08255 0.41 +0.4
1,908,381 - CA264_08255 0.41 -0.3
1,908,381 - CA264_08255 0.41 -0.3
1,908,457 + CA264_08255 0.48 -0.5
1,908,458 - CA264_08255 0.48 -0.3
1,908,538 + CA264_08255 0.55 -0.8
1,908,557 + CA264_08255 0.57 +1.1
1,908,617 + CA264_08255 0.63 +0.5
1,908,617 + CA264_08255 0.63 +0.3
1,908,617 + CA264_08255 0.63 -0.4
1,908,617 + CA264_08255 0.63 -0.2
1,908,618 - CA264_08255 0.63 -0.5
1,908,735 + CA264_08255 0.73 -0.0
1,908,836 + CA264_08255 0.83 -0.9
1,908,857 + CA264_08255 0.85 -0.4
1,908,858 - CA264_08255 0.85 +0.1
1,908,954 - +0.3
1,908,959 + +0.1
1,908,960 - -0.3
1,909,105 + -0.6
1,909,119 - -2.0
1,909,175 + -0.2
1,909,176 - -0.6
1,909,177 + -0.5
1,909,177 + -0.8
1,909,187 - +0.4
1,909,273 + -0.8
1,909,274 - -0.2
1,909,276 - +0.2
1,909,283 + -0.2
1,909,283 + +0.7
1,909,285 + -0.4
1,909,311 - +0.2
1,909,373 - +0.0
1,909,411 + -0.4
1,909,412 - -0.2
1,909,416 + -0.1
1,909,456 - -0.7
1,909,468 + +0.2
1,909,469 - -0.6
1,909,615 + CA264_08260 0.31 -0.6
1,909,634 + CA264_08260 0.34 +0.1
1,909,648 + CA264_08260 0.36 -0.2
1,909,649 - CA264_08260 0.36 +1.7
1,909,714 - CA264_08260 0.47 +0.8
1,909,714 - CA264_08260 0.47 +1.5
1,909,719 - CA264_08260 0.48 -0.0
1,909,732 + CA264_08260 0.50 -1.1
1,909,733 - CA264_08260 0.50 -0.7
1,909,758 + CA264_08260 0.55 -1.5
1,909,759 - CA264_08260 0.55 -0.7
1,909,759 - CA264_08260 0.55 -0.5
1,909,759 - CA264_08260 0.55 -0.8
1,909,848 + CA264_08260 0.70 -1.2
1,909,848 + CA264_08260 0.70 -0.3
1,909,976 + +0.5

Or see this region's nucleotide sequence