Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_07240

Experiment: m.b. benzoic 0.58 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_07235 and CA264_07240 are separated by 127 nucleotidesCA264_07240 and CA264_07245 are separated by 225 nucleotidesCA264_07245 and CA264_07250 are separated by 120 nucleotides CA264_07235: CA264_07235 - SIGNAL peptide protein, at 1,670,447 to 1,670,845 _07235 CA264_07240: CA264_07240 - hypothetical protein, at 1,670,973 to 1,671,440 _07240 CA264_07245: CA264_07245 - hypothetical protein, at 1,671,666 to 1,672,232 _07245 CA264_07250: CA264_07250 - hypothetical protein, at 1,672,353 to 1,674,872 _07250 Position (kb) 1670 1671 1672Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1669.989 kb on + strandat 1669.996 kb on + strandat 1669.996 kb on + strandat 1669.997 kb on - strandat 1670.002 kb on + strandat 1670.003 kb on - strandat 1670.003 kb on - strandat 1670.006 kb on - strandat 1670.022 kb on + strandat 1670.028 kb on + strandat 1670.028 kb on + strandat 1670.028 kb on + strandat 1670.029 kb on - strandat 1670.029 kb on - strandat 1670.029 kb on - strandat 1670.118 kb on + strandat 1670.119 kb on - strandat 1670.126 kb on + strandat 1670.126 kb on + strandat 1670.127 kb on - strandat 1670.127 kb on - strandat 1670.128 kb on + strandat 1670.128 kb on + strandat 1670.129 kb on - strandat 1670.129 kb on - strandat 1670.207 kb on + strandat 1670.237 kb on + strandat 1670.237 kb on + strandat 1670.245 kb on + strandat 1670.246 kb on - strandat 1670.356 kb on - strandat 1670.366 kb on + strandat 1670.377 kb on + strandat 1670.400 kb on + strandat 1670.430 kb on + strandat 1670.436 kb on + strandat 1670.436 kb on + strandat 1670.436 kb on + strandat 1670.437 kb on - strandat 1670.439 kb on + strandat 1670.534 kb on + strand, within CA264_07235at 1670.614 kb on + strand, within CA264_07235at 1670.665 kb on + strand, within CA264_07235at 1670.714 kb on - strand, within CA264_07235at 1670.714 kb on - strand, within CA264_07235at 1670.717 kb on + strand, within CA264_07235at 1670.717 kb on + strand, within CA264_07235at 1670.717 kb on + strand, within CA264_07235at 1670.718 kb on - strand, within CA264_07235at 1670.718 kb on - strand, within CA264_07235at 1670.741 kb on + strand, within CA264_07235at 1670.750 kb on + strand, within CA264_07235at 1670.750 kb on + strand, within CA264_07235at 1670.750 kb on + strand, within CA264_07235at 1670.750 kb on + strand, within CA264_07235at 1670.752 kb on + strand, within CA264_07235at 1670.753 kb on - strand, within CA264_07235at 1670.753 kb on - strand, within CA264_07235at 1670.753 kb on - strand, within CA264_07235at 1670.753 kb on - strand, within CA264_07235at 1670.773 kb on + strand, within CA264_07235at 1670.792 kb on + strand, within CA264_07235at 1670.793 kb on - strand, within CA264_07235at 1670.793 kb on - strand, within CA264_07235at 1670.844 kb on - strandat 1670.902 kb on + strandat 1670.910 kb on + strandat 1670.995 kb on + strandat 1670.995 kb on + strandat 1671.083 kb on - strand, within CA264_07240at 1671.130 kb on + strand, within CA264_07240at 1671.146 kb on + strand, within CA264_07240at 1671.147 kb on - strand, within CA264_07240at 1671.147 kb on - strand, within CA264_07240at 1671.168 kb on + strand, within CA264_07240at 1671.168 kb on + strand, within CA264_07240at 1671.169 kb on - strand, within CA264_07240at 1671.169 kb on - strand, within CA264_07240at 1671.247 kb on + strand, within CA264_07240at 1671.247 kb on + strand, within CA264_07240at 1671.247 kb on + strand, within CA264_07240at 1671.247 kb on + strand, within CA264_07240at 1671.248 kb on - strand, within CA264_07240at 1671.248 kb on - strand, within CA264_07240at 1671.278 kb on + strand, within CA264_07240at 1671.417 kb on + strandat 1671.472 kb on + strandat 1671.472 kb on + strandat 1671.473 kb on - strandat 1671.501 kb on + strandat 1671.588 kb on + strandat 1671.589 kb on - strandat 1671.644 kb on + strandat 1671.644 kb on + strandat 1671.760 kb on - strand, within CA264_07245at 1671.793 kb on - strand, within CA264_07245at 1671.793 kb on - strand, within CA264_07245at 1671.877 kb on - strand, within CA264_07245at 1671.900 kb on - strand, within CA264_07245at 1671.915 kb on + strand, within CA264_07245at 1671.951 kb on + strand, within CA264_07245at 1672.109 kb on + strand, within CA264_07245at 1672.134 kb on - strand, within CA264_07245at 1672.143 kb on - strand, within CA264_07245at 1672.189 kb on + strandat 1672.292 kb on - strandat 1672.297 kb on - strandat 1672.318 kb on - strandat 1672.327 kb on + strandat 1672.418 kb on + strandat 1672.419 kb on - strandat 1672.420 kb on + strandat 1672.421 kb on - strandat 1672.423 kb on + strandat 1672.423 kb on + strandat 1672.423 kb on + strandat 1672.423 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.58 mg/ml
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1,669,989 + +0.1
1,669,996 + -0.3
1,669,996 + +0.1
1,669,997 - +0.4
1,670,002 + -2.1
1,670,003 - -0.2
1,670,003 - +0.6
1,670,006 - -0.5
1,670,022 + +0.0
1,670,028 + +0.7
1,670,028 + -1.0
1,670,028 + -0.3
1,670,029 - +1.0
1,670,029 - +0.0
1,670,029 - -0.3
1,670,118 + -0.3
1,670,119 - -0.7
1,670,126 + -0.1
1,670,126 + +0.7
1,670,127 - -0.4
1,670,127 - +0.7
1,670,128 + +0.7
1,670,128 + -0.3
1,670,129 - -1.2
1,670,129 - -0.8
1,670,207 + -0.6
1,670,237 + +0.7
1,670,237 + -1.0
1,670,245 + +0.5
1,670,246 - +0.3
1,670,356 - +0.1
1,670,366 + +0.7
1,670,377 + +0.7
1,670,400 + -0.1
1,670,430 + +0.0
1,670,436 + +0.2
1,670,436 + -0.3
1,670,436 + -0.3
1,670,437 - -0.4
1,670,439 + -0.5
1,670,534 + CA264_07235 0.22 -0.3
1,670,614 + CA264_07235 0.42 -1.3
1,670,665 + CA264_07235 0.55 +2.7
1,670,714 - CA264_07235 0.67 +0.5
1,670,714 - CA264_07235 0.67 -0.9
1,670,717 + CA264_07235 0.68 -0.3
1,670,717 + CA264_07235 0.68 -0.0
1,670,717 + CA264_07235 0.68 +1.2
1,670,718 - CA264_07235 0.68 -0.7
1,670,718 - CA264_07235 0.68 -0.2
1,670,741 + CA264_07235 0.74 -0.8
1,670,750 + CA264_07235 0.76 -1.8
1,670,750 + CA264_07235 0.76 -0.8
1,670,750 + CA264_07235 0.76 -0.9
1,670,750 + CA264_07235 0.76 +0.5
1,670,752 + CA264_07235 0.76 -0.3
1,670,753 - CA264_07235 0.77 +1.1
1,670,753 - CA264_07235 0.77 +0.1
1,670,753 - CA264_07235 0.77 -0.4
1,670,753 - CA264_07235 0.77 +0.1
1,670,773 + CA264_07235 0.82 +0.7
1,670,792 + CA264_07235 0.86 +0.7
1,670,793 - CA264_07235 0.87 +1.6
1,670,793 - CA264_07235 0.87 -0.1
1,670,844 - +0.5
1,670,902 + -0.7
1,670,910 + -0.3
1,670,995 + -0.5
1,670,995 + +0.7
1,671,083 - CA264_07240 0.24 -0.3
1,671,130 + CA264_07240 0.34 -0.6
1,671,146 + CA264_07240 0.37 +0.3
1,671,147 - CA264_07240 0.37 -1.7
1,671,147 - CA264_07240 0.37 +0.0
1,671,168 + CA264_07240 0.42 -1.4
1,671,168 + CA264_07240 0.42 -0.8
1,671,169 - CA264_07240 0.42 -0.4
1,671,169 - CA264_07240 0.42 +0.7
1,671,247 + CA264_07240 0.59 -0.7
1,671,247 + CA264_07240 0.59 -0.8
1,671,247 + CA264_07240 0.59 -2.3
1,671,247 + CA264_07240 0.59 +0.2
1,671,248 - CA264_07240 0.59 +0.0
1,671,248 - CA264_07240 0.59 -0.1
1,671,278 + CA264_07240 0.65 -1.0
1,671,417 + -0.3
1,671,472 + -1.3
1,671,472 + +1.7
1,671,473 - -1.1
1,671,501 + -0.8
1,671,588 + +1.0
1,671,589 - -1.2
1,671,644 + -1.2
1,671,644 + -1.1
1,671,760 - CA264_07245 0.17 -2.3
1,671,793 - CA264_07245 0.22 -2.4
1,671,793 - CA264_07245 0.22 -1.7
1,671,877 - CA264_07245 0.37 -3.2
1,671,900 - CA264_07245 0.41 -1.3
1,671,915 + CA264_07245 0.44 -1.1
1,671,951 + CA264_07245 0.50 -2.1
1,672,109 + CA264_07245 0.78 -2.5
1,672,134 - CA264_07245 0.83 -1.6
1,672,143 - CA264_07245 0.84 -1.3
1,672,189 + +0.7
1,672,292 - -1.2
1,672,297 - -0.3
1,672,318 - -1.1
1,672,327 + -0.2
1,672,418 + +0.7
1,672,419 - +0.4
1,672,420 + -0.6
1,672,421 - -0.1
1,672,423 + -0.1
1,672,423 + +0.3
1,672,423 + +0.8
1,672,423 + -0.2

Or see this region's nucleotide sequence