Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_06515

Experiment: m.b. benzoic 0.58 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_06510 and CA264_06515 are separated by 39 nucleotidesCA264_06515 and CA264_06520 are separated by 64 nucleotidesCA264_06520 and CA264_06525 overlap by 11 nucleotides CA264_06510: CA264_06510 - trehalose synthase, at 1,503,884 to 1,505,533 _06510 CA264_06515: CA264_06515 - transcription elongation factor GreAB, at 1,505,573 to 1,506,091 _06515 CA264_06520: CA264_06520 - DUF4440 domain-containing protein, at 1,506,156 to 1,506,605 _06520 CA264_06525: CA264_06525 - monofunctional biosynthetic peptidoglycan transglycosylase, at 1,506,595 to 1,507,329 _06525 Position (kb) 1505 1506 1507Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1504.688 kb on + strand, within CA264_06510at 1504.689 kb on - strand, within CA264_06510at 1504.701 kb on - strand, within CA264_06510at 1504.701 kb on - strand, within CA264_06510at 1504.701 kb on - strand, within CA264_06510at 1504.701 kb on - strand, within CA264_06510at 1504.858 kb on - strand, within CA264_06510at 1504.883 kb on + strand, within CA264_06510at 1504.884 kb on - strand, within CA264_06510at 1504.961 kb on + strand, within CA264_06510at 1504.963 kb on + strand, within CA264_06510at 1504.964 kb on - strand, within CA264_06510at 1504.969 kb on + strand, within CA264_06510at 1504.970 kb on - strand, within CA264_06510at 1504.970 kb on - strand, within CA264_06510at 1505.069 kb on - strand, within CA264_06510at 1505.086 kb on + strand, within CA264_06510at 1505.087 kb on - strand, within CA264_06510at 1505.250 kb on + strand, within CA264_06510at 1505.251 kb on - strand, within CA264_06510at 1505.251 kb on - strand, within CA264_06510at 1505.284 kb on + strand, within CA264_06510at 1505.285 kb on - strand, within CA264_06510at 1505.296 kb on - strand, within CA264_06510at 1505.296 kb on - strand, within CA264_06510at 1505.296 kb on - strand, within CA264_06510at 1505.309 kb on + strand, within CA264_06510at 1505.309 kb on + strand, within CA264_06510at 1505.421 kb on + strandat 1505.421 kb on + strandat 1505.422 kb on - strandat 1505.427 kb on - strandat 1505.427 kb on - strandat 1505.427 kb on - strandat 1505.427 kb on - strandat 1505.432 kb on - strandat 1505.509 kb on - strandat 1505.509 kb on - strandat 1505.509 kb on - strandat 1505.532 kb on - strandat 1505.562 kb on + strandat 1505.562 kb on + strandat 1505.564 kb on + strandat 1505.661 kb on - strand, within CA264_06515at 1505.661 kb on - strand, within CA264_06515at 1505.774 kb on - strand, within CA264_06515at 1505.774 kb on - strand, within CA264_06515at 1505.774 kb on - strand, within CA264_06515at 1505.793 kb on + strand, within CA264_06515at 1505.794 kb on - strand, within CA264_06515at 1505.814 kb on + strand, within CA264_06515at 1505.814 kb on + strand, within CA264_06515at 1505.815 kb on - strand, within CA264_06515at 1505.863 kb on - strand, within CA264_06515at 1505.881 kb on + strand, within CA264_06515at 1505.881 kb on + strand, within CA264_06515at 1505.881 kb on + strand, within CA264_06515at 1505.882 kb on - strand, within CA264_06515at 1505.934 kb on + strand, within CA264_06515at 1505.982 kb on + strand, within CA264_06515at 1506.072 kb on + strandat 1506.073 kb on - strandat 1506.106 kb on - strandat 1506.111 kb on + strandat 1506.112 kb on - strandat 1506.150 kb on + strandat 1506.152 kb on + strandat 1506.304 kb on - strand, within CA264_06520at 1506.335 kb on + strand, within CA264_06520at 1506.335 kb on + strand, within CA264_06520at 1506.363 kb on - strand, within CA264_06520at 1506.364 kb on + strand, within CA264_06520at 1506.364 kb on + strand, within CA264_06520at 1506.364 kb on + strand, within CA264_06520at 1506.365 kb on - strand, within CA264_06520at 1506.365 kb on - strand, within CA264_06520at 1506.391 kb on + strand, within CA264_06520at 1506.451 kb on + strand, within CA264_06520at 1506.528 kb on + strand, within CA264_06520at 1506.529 kb on - strand, within CA264_06520at 1506.571 kb on - strandat 1506.571 kb on - strandat 1506.589 kb on + strandat 1506.589 kb on + strandat 1506.633 kb on - strandat 1506.633 kb on - strandat 1506.633 kb on - strandat 1506.745 kb on + strand, within CA264_06525at 1506.794 kb on + strand, within CA264_06525at 1506.794 kb on - strand, within CA264_06525at 1506.795 kb on - strand, within CA264_06525at 1506.854 kb on + strand, within CA264_06525at 1506.854 kb on + strand, within CA264_06525at 1506.856 kb on + strand, within CA264_06525at 1506.856 kb on + strand, within CA264_06525at 1506.856 kb on + strand, within CA264_06525at 1506.856 kb on + strand, within CA264_06525at 1506.857 kb on - strand, within CA264_06525at 1506.903 kb on + strand, within CA264_06525at 1506.904 kb on - strand, within CA264_06525at 1506.904 kb on - strand, within CA264_06525at 1506.932 kb on + strand, within CA264_06525at 1506.933 kb on - strand, within CA264_06525at 1506.999 kb on + strand, within CA264_06525at 1507.038 kb on + strand, within CA264_06525at 1507.038 kb on + strand, within CA264_06525

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.58 mg/ml
remove
1,504,688 + CA264_06510 0.49 +2.5
1,504,689 - CA264_06510 0.49 +0.3
1,504,701 - CA264_06510 0.50 +0.4
1,504,701 - CA264_06510 0.50 -0.6
1,504,701 - CA264_06510 0.50 -0.7
1,504,701 - CA264_06510 0.50 -1.2
1,504,858 - CA264_06510 0.59 -2.2
1,504,883 + CA264_06510 0.61 +0.0
1,504,884 - CA264_06510 0.61 +0.3
1,504,961 + CA264_06510 0.65 +0.0
1,504,963 + CA264_06510 0.65 -0.2
1,504,964 - CA264_06510 0.65 +0.5
1,504,969 + CA264_06510 0.66 +0.3
1,504,970 - CA264_06510 0.66 +0.8
1,504,970 - CA264_06510 0.66 -0.8
1,505,069 - CA264_06510 0.72 -0.3
1,505,086 + CA264_06510 0.73 +1.2
1,505,087 - CA264_06510 0.73 +0.0
1,505,250 + CA264_06510 0.83 -0.3
1,505,251 - CA264_06510 0.83 -1.4
1,505,251 - CA264_06510 0.83 +0.8
1,505,284 + CA264_06510 0.85 +0.8
1,505,285 - CA264_06510 0.85 +0.1
1,505,296 - CA264_06510 0.86 -0.1
1,505,296 - CA264_06510 0.86 -0.3
1,505,296 - CA264_06510 0.86 -1.0
1,505,309 + CA264_06510 0.86 +0.5
1,505,309 + CA264_06510 0.86 +0.3
1,505,421 + +0.6
1,505,421 + +0.4
1,505,422 - -0.5
1,505,427 - -1.2
1,505,427 - +1.3
1,505,427 - -0.7
1,505,427 - -0.2
1,505,432 - -0.2
1,505,509 - +0.4
1,505,509 - -0.6
1,505,509 - -0.2
1,505,532 - -0.6
1,505,562 + -0.2
1,505,562 + -0.1
1,505,564 + -0.3
1,505,661 - CA264_06515 0.17 +0.2
1,505,661 - CA264_06515 0.17 -0.3
1,505,774 - CA264_06515 0.39 -0.2
1,505,774 - CA264_06515 0.39 +0.2
1,505,774 - CA264_06515 0.39 -0.7
1,505,793 + CA264_06515 0.42 +1.3
1,505,794 - CA264_06515 0.43 -0.2
1,505,814 + CA264_06515 0.46 -0.8
1,505,814 + CA264_06515 0.46 +1.2
1,505,815 - CA264_06515 0.47 -0.2
1,505,863 - CA264_06515 0.56 -0.9
1,505,881 + CA264_06515 0.59 +0.6
1,505,881 + CA264_06515 0.59 -0.2
1,505,881 + CA264_06515 0.59 -0.1
1,505,882 - CA264_06515 0.60 -0.5
1,505,934 + CA264_06515 0.70 +0.2
1,505,982 + CA264_06515 0.79 +1.1
1,506,072 + -1.2
1,506,073 - -0.6
1,506,106 - -0.3
1,506,111 + -0.6
1,506,112 - +0.3
1,506,150 + -1.5
1,506,152 + -1.0
1,506,304 - CA264_06520 0.33 -1.1
1,506,335 + CA264_06520 0.40 -1.3
1,506,335 + CA264_06520 0.40 -0.2
1,506,363 - CA264_06520 0.46 +0.1
1,506,364 + CA264_06520 0.46 -1.2
1,506,364 + CA264_06520 0.46 +0.0
1,506,364 + CA264_06520 0.46 -0.4
1,506,365 - CA264_06520 0.46 -0.5
1,506,365 - CA264_06520 0.46 +0.2
1,506,391 + CA264_06520 0.52 -0.5
1,506,451 + CA264_06520 0.66 -2.2
1,506,528 + CA264_06520 0.83 +0.8
1,506,529 - CA264_06520 0.83 -0.3
1,506,571 - -0.9
1,506,571 - -1.2
1,506,589 + -0.3
1,506,589 + -0.2
1,506,633 - -0.5
1,506,633 - -1.8
1,506,633 - +0.2
1,506,745 + CA264_06525 0.20 -1.0
1,506,794 + CA264_06525 0.27 +0.5
1,506,794 - CA264_06525 0.27 +0.0
1,506,795 - CA264_06525 0.27 -0.6
1,506,854 + CA264_06525 0.35 -0.2
1,506,854 + CA264_06525 0.35 -2.4
1,506,856 + CA264_06525 0.36 -1.2
1,506,856 + CA264_06525 0.36 +0.5
1,506,856 + CA264_06525 0.36 -1.0
1,506,856 + CA264_06525 0.36 -0.1
1,506,857 - CA264_06525 0.36 +0.0
1,506,903 + CA264_06525 0.42 +3.6
1,506,904 - CA264_06525 0.42 +1.8
1,506,904 - CA264_06525 0.42 -0.5
1,506,932 + CA264_06525 0.46 +0.5
1,506,933 - CA264_06525 0.46 -0.1
1,506,999 + CA264_06525 0.55 -0.7
1,507,038 + CA264_06525 0.60 -0.0
1,507,038 + CA264_06525 0.60 +1.2

Or see this region's nucleotide sequence