Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_06430

Experiment: m.b. benzoic 0.58 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_06420 and CA264_06425 are separated by 71 nucleotidesCA264_06425 and CA264_06430 are separated by 165 nucleotidesCA264_06430 and CA264_06435 are separated by 78 nucleotides CA264_06420: CA264_06420 - hypothetical protein, at 1,489,731 to 1,490,177 _06420 CA264_06425: CA264_06425 - DUF423 domain-containing protein, at 1,490,249 to 1,490,626 _06425 CA264_06430: CA264_06430 - hypothetical protein, at 1,490,792 to 1,491,235 _06430 CA264_06435: CA264_06435 - ATP-dependent endonuclease, at 1,491,314 to 1,492,720 _06435 Position (kb) 1490 1491 1492Strain fitness (log2 ratio) -1 0 1 2at 1489.862 kb on + strand, within CA264_06420at 1489.933 kb on - strand, within CA264_06420at 1489.989 kb on + strand, within CA264_06420at 1489.989 kb on + strand, within CA264_06420at 1489.989 kb on + strand, within CA264_06420at 1489.989 kb on + strand, within CA264_06420at 1489.990 kb on - strand, within CA264_06420at 1490.062 kb on + strand, within CA264_06420at 1490.062 kb on + strand, within CA264_06420at 1490.121 kb on + strand, within CA264_06420at 1490.152 kb on + strandat 1490.156 kb on - strandat 1490.175 kb on + strandat 1490.205 kb on + strandat 1490.219 kb on + strandat 1490.219 kb on + strandat 1490.220 kb on - strandat 1490.223 kb on + strandat 1490.225 kb on + strandat 1490.232 kb on + strandat 1490.266 kb on - strandat 1490.297 kb on - strand, within CA264_06425at 1490.308 kb on - strand, within CA264_06425at 1490.396 kb on + strand, within CA264_06425at 1490.397 kb on - strand, within CA264_06425at 1490.401 kb on + strand, within CA264_06425at 1490.402 kb on - strand, within CA264_06425at 1490.513 kb on + strand, within CA264_06425at 1490.514 kb on - strand, within CA264_06425at 1490.624 kb on + strandat 1490.669 kb on - strandat 1490.771 kb on - strandat 1490.771 kb on - strandat 1490.778 kb on - strandat 1490.844 kb on + strand, within CA264_06430at 1490.872 kb on + strand, within CA264_06430at 1490.873 kb on - strand, within CA264_06430at 1490.902 kb on + strand, within CA264_06430at 1490.903 kb on - strand, within CA264_06430at 1490.929 kb on + strand, within CA264_06430at 1490.972 kb on - strand, within CA264_06430at 1490.986 kb on + strand, within CA264_06430at 1491.002 kb on + strand, within CA264_06430at 1491.002 kb on + strand, within CA264_06430at 1491.021 kb on - strand, within CA264_06430at 1491.047 kb on - strand, within CA264_06430at 1491.097 kb on + strand, within CA264_06430at 1491.266 kb on + strandat 1491.266 kb on + strandat 1491.266 kb on + strandat 1491.266 kb on + strandat 1491.267 kb on - strandat 1491.267 kb on - strandat 1491.268 kb on + strandat 1491.268 kb on + strandat 1491.268 kb on + strandat 1491.268 kb on + strandat 1491.269 kb on - strandat 1491.270 kb on + strandat 1491.271 kb on - strandat 1491.326 kb on + strandat 1491.329 kb on + strandat 1491.330 kb on - strandat 1491.330 kb on - strandat 1491.330 kb on - strandat 1491.330 kb on - strandat 1491.330 kb on - strandat 1491.351 kb on + strandat 1491.351 kb on + strandat 1491.537 kb on - strand, within CA264_06435at 1491.576 kb on + strand, within CA264_06435at 1491.576 kb on + strand, within CA264_06435at 1491.598 kb on - strand, within CA264_06435at 1491.643 kb on - strand, within CA264_06435at 1491.665 kb on + strand, within CA264_06435at 1491.732 kb on + strand, within CA264_06435at 1491.733 kb on - strand, within CA264_06435at 1491.733 kb on - strand, within CA264_06435at 1491.758 kb on - strand, within CA264_06435at 1491.758 kb on - strand, within CA264_06435at 1491.762 kb on - strand, within CA264_06435at 1491.787 kb on + strand, within CA264_06435at 1491.823 kb on - strand, within CA264_06435at 1491.823 kb on - strand, within CA264_06435at 1491.907 kb on - strand, within CA264_06435at 1491.969 kb on + strand, within CA264_06435at 1491.970 kb on - strand, within CA264_06435at 1492.019 kb on - strand, within CA264_06435at 1492.157 kb on - strand, within CA264_06435at 1492.157 kb on - strand, within CA264_06435at 1492.214 kb on + strand, within CA264_06435

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.58 mg/ml
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1,489,862 + CA264_06420 0.29 +0.4
1,489,933 - CA264_06420 0.45 +1.8
1,489,989 + CA264_06420 0.58 -1.4
1,489,989 + CA264_06420 0.58 -0.1
1,489,989 + CA264_06420 0.58 +0.1
1,489,989 + CA264_06420 0.58 +0.9
1,489,990 - CA264_06420 0.58 +0.3
1,490,062 + CA264_06420 0.74 -0.2
1,490,062 + CA264_06420 0.74 -1.0
1,490,121 + CA264_06420 0.87 +0.1
1,490,152 + +1.8
1,490,156 - -0.5
1,490,175 + +0.9
1,490,205 + -0.4
1,490,219 + -0.1
1,490,219 + -0.6
1,490,220 - +0.2
1,490,223 + -0.3
1,490,225 + -1.3
1,490,232 + -0.1
1,490,266 - -0.6
1,490,297 - CA264_06425 0.13 +1.1
1,490,308 - CA264_06425 0.16 -0.6
1,490,396 + CA264_06425 0.39 -0.4
1,490,397 - CA264_06425 0.39 +0.4
1,490,401 + CA264_06425 0.40 -0.5
1,490,402 - CA264_06425 0.40 -1.5
1,490,513 + CA264_06425 0.70 +0.1
1,490,514 - CA264_06425 0.70 +1.4
1,490,624 + +0.7
1,490,669 - -0.2
1,490,771 - -0.4
1,490,771 - +0.3
1,490,778 - +0.2
1,490,844 + CA264_06430 0.12 +1.8
1,490,872 + CA264_06430 0.18 -0.3
1,490,873 - CA264_06430 0.18 -0.7
1,490,902 + CA264_06430 0.25 -0.8
1,490,903 - CA264_06430 0.25 -1.1
1,490,929 + CA264_06430 0.31 -0.7
1,490,972 - CA264_06430 0.41 +0.4
1,490,986 + CA264_06430 0.44 +0.1
1,491,002 + CA264_06430 0.47 +0.5
1,491,002 + CA264_06430 0.47 -1.3
1,491,021 - CA264_06430 0.52 -0.5
1,491,047 - CA264_06430 0.57 -0.2
1,491,097 + CA264_06430 0.69 -1.2
1,491,266 + -0.2
1,491,266 + -0.7
1,491,266 + -0.4
1,491,266 + -0.6
1,491,267 - -0.3
1,491,267 - -0.2
1,491,268 + +0.3
1,491,268 + -0.4
1,491,268 + +0.2
1,491,268 + +1.2
1,491,269 - +0.2
1,491,270 + +0.4
1,491,271 - -0.8
1,491,326 + -0.3
1,491,329 + -1.3
1,491,330 - -0.0
1,491,330 - +0.8
1,491,330 - +0.5
1,491,330 - -0.6
1,491,330 - +0.0
1,491,351 + -1.6
1,491,351 + -1.5
1,491,537 - CA264_06435 0.16 -0.2
1,491,576 + CA264_06435 0.19 +0.1
1,491,576 + CA264_06435 0.19 -0.1
1,491,598 - CA264_06435 0.20 -0.8
1,491,643 - CA264_06435 0.23 +0.1
1,491,665 + CA264_06435 0.25 +1.0
1,491,732 + CA264_06435 0.30 -0.1
1,491,733 - CA264_06435 0.30 -0.5
1,491,733 - CA264_06435 0.30 +0.6
1,491,758 - CA264_06435 0.32 -0.3
1,491,758 - CA264_06435 0.32 -0.7
1,491,762 - CA264_06435 0.32 -0.4
1,491,787 + CA264_06435 0.34 -0.2
1,491,823 - CA264_06435 0.36 +2.3
1,491,823 - CA264_06435 0.36 -0.3
1,491,907 - CA264_06435 0.42 -0.1
1,491,969 + CA264_06435 0.47 +0.6
1,491,970 - CA264_06435 0.47 +0.1
1,492,019 - CA264_06435 0.50 -0.5
1,492,157 - CA264_06435 0.60 -1.7
1,492,157 - CA264_06435 0.60 -1.2
1,492,214 + CA264_06435 0.64 +0.5

Or see this region's nucleotide sequence