Experiment: m.b. benzoic 0.58 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_05255 and CA264_05260 are separated by 36 nucleotides CA264_05260 and CA264_05265 are separated by 17 nucleotides CA264_05265 and CA264_05270 are separated by 151 nucleotides
CA264_05255: CA264_05255 - hypothetical protein, at 1,218,763 to 1,219,287
_05255
CA264_05260: CA264_05260 - hypothetical protein, at 1,219,324 to 1,219,986
_05260
CA264_05265: CA264_05265 - 16S rRNA (uracil(1498)-N(3))-methyltransferase, at 1,220,004 to 1,220,720
_05265
CA264_05270: CA264_05270 - phosphoenolpyruvate carboxykinase (ATP), at 1,220,872 to 1,222,485
_05270
Position (kb)
1220
1221 Strain fitness (log2 ratio)
-1
0
1
2 at 1219.134 kb on + strand, within CA264_05255 at 1219.134 kb on + strand, within CA264_05255 at 1219.174 kb on + strand, within CA264_05255 at 1219.282 kb on - strand at 1219.285 kb on + strand at 1219.286 kb on - strand at 1219.286 kb on - strand at 1219.286 kb on - strand at 1219.449 kb on + strand, within CA264_05260 at 1219.450 kb on - strand, within CA264_05260 at 1219.478 kb on - strand, within CA264_05260 at 1219.564 kb on - strand, within CA264_05260 at 1219.585 kb on + strand, within CA264_05260 at 1219.647 kb on - strand, within CA264_05260 at 1219.911 kb on + strand, within CA264_05260 at 1219.917 kb on + strand, within CA264_05260 at 1219.919 kb on + strand, within CA264_05260 at 1219.954 kb on + strand at 1219.955 kb on - strand at 1219.955 kb on - strand at 1219.987 kb on - strand at 1219.997 kb on + strand at 1220.000 kb on - strand at 1220.000 kb on - strand at 1220.005 kb on + strand at 1220.006 kb on - strand at 1220.130 kb on + strand, within CA264_05265 at 1220.131 kb on - strand, within CA264_05265 at 1220.168 kb on + strand, within CA264_05265 at 1220.189 kb on - strand, within CA264_05265 at 1220.230 kb on - strand, within CA264_05265 at 1220.241 kb on - strand, within CA264_05265 at 1220.299 kb on - strand, within CA264_05265 at 1220.408 kb on + strand, within CA264_05265 at 1220.489 kb on + strand, within CA264_05265 at 1220.490 kb on - strand, within CA264_05265 at 1220.490 kb on - strand, within CA264_05265 at 1220.500 kb on + strand, within CA264_05265 at 1220.500 kb on + strand, within CA264_05265 at 1220.516 kb on - strand, within CA264_05265 at 1220.585 kb on - strand, within CA264_05265 at 1220.604 kb on + strand, within CA264_05265 at 1220.611 kb on + strand, within CA264_05265 at 1220.613 kb on + strand, within CA264_05265 at 1220.614 kb on - strand, within CA264_05265 at 1220.679 kb on - strand at 1220.712 kb on + strand at 1220.729 kb on + strand at 1220.733 kb on - strand at 1220.733 kb on - strand at 1220.777 kb on - strand at 1220.777 kb on - strand at 1220.777 kb on - strand at 1220.784 kb on + strand at 1220.787 kb on - strand at 1220.795 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.58 mg/ml remove 1,219,134 + CA264_05255 0.71 +1.8 1,219,134 + CA264_05255 0.71 +1.2 1,219,174 + CA264_05255 0.78 -0.3 1,219,282 - +1.0 1,219,285 + +0.2 1,219,286 - +0.1 1,219,286 - +0.2 1,219,286 - -0.6 1,219,449 + CA264_05260 0.19 -1.0 1,219,450 - CA264_05260 0.19 -0.5 1,219,478 - CA264_05260 0.23 -0.3 1,219,564 - CA264_05260 0.36 +0.5 1,219,585 + CA264_05260 0.39 -0.8 1,219,647 - CA264_05260 0.49 -0.8 1,219,911 + CA264_05260 0.89 -1.4 1,219,917 + CA264_05260 0.89 -0.3 1,219,919 + CA264_05260 0.90 -0.6 1,219,954 + -0.6 1,219,955 - +0.0 1,219,955 - +0.5 1,219,987 - -1.2 1,219,997 + +1.8 1,220,000 - -0.3 1,220,000 - -0.8 1,220,005 + +1.5 1,220,006 - -0.3 1,220,130 + CA264_05265 0.18 +0.2 1,220,131 - CA264_05265 0.18 -0.2 1,220,168 + CA264_05265 0.23 +0.3 1,220,189 - CA264_05265 0.26 +0.1 1,220,230 - CA264_05265 0.32 -0.5 1,220,241 - CA264_05265 0.33 -0.7 1,220,299 - CA264_05265 0.41 -0.1 1,220,408 + CA264_05265 0.56 -0.0 1,220,489 + CA264_05265 0.68 +2.4 1,220,490 - CA264_05265 0.68 -0.2 1,220,490 - CA264_05265 0.68 +0.4 1,220,500 + CA264_05265 0.69 -1.2 1,220,500 + CA264_05265 0.69 +0.5 1,220,516 - CA264_05265 0.71 +0.2 1,220,585 - CA264_05265 0.81 +0.8 1,220,604 + CA264_05265 0.84 +0.3 1,220,611 + CA264_05265 0.85 -0.4 1,220,613 + CA264_05265 0.85 -0.8 1,220,614 - CA264_05265 0.85 -0.2 1,220,679 - -1.0 1,220,712 + +0.3 1,220,729 + -0.5 1,220,733 - +0.1 1,220,733 - +0.1 1,220,777 - +0.5 1,220,777 - +0.5 1,220,777 - -0.2 1,220,784 + -0.3 1,220,787 - +1.4 1,220,795 - +1.0
Or see this region's nucleotide sequence