Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_04625

Experiment: m.b. benzoic 0.58 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_04615 and CA264_04620 are separated by 167 nucleotidesCA264_04620 and CA264_04625 are separated by 16 nucleotidesCA264_04625 and CA264_04630 are separated by 241 nucleotides CA264_04615: CA264_04615 - hydrolase, at 1,067,535 to 1,069,085 _04615 CA264_04620: CA264_04620 - succinyl-CoA--3-ketoacid-CoA transferase, at 1,069,253 to 1,069,909 _04620 CA264_04625: CA264_04625 - succinyl-CoA--3-ketoacid-CoA transferase, at 1,069,926 to 1,070,624 _04625 CA264_04630: CA264_04630 - TIGR00341 family protein, at 1,070,866 to 1,072,743 _04630 Position (kb) 1069 1070 1071Strain fitness (log2 ratio) -2 -1 0 1at 1069.053 kb on - strandat 1069.053 kb on - strandat 1069.064 kb on + strandat 1069.065 kb on - strandat 1069.086 kb on + strandat 1069.090 kb on + strandat 1069.090 kb on + strandat 1069.113 kb on + strandat 1069.114 kb on - strandat 1069.123 kb on - strandat 1069.135 kb on + strandat 1069.137 kb on + strandat 1069.138 kb on - strandat 1069.147 kb on - strandat 1069.149 kb on - strandat 1069.152 kb on - strandat 1069.153 kb on + strandat 1069.249 kb on + strandat 1069.272 kb on - strandat 1069.313 kb on + strandat 1069.314 kb on - strandat 1069.355 kb on - strand, within CA264_04620at 1069.430 kb on + strand, within CA264_04620at 1069.496 kb on - strand, within CA264_04620at 1069.542 kb on - strand, within CA264_04620at 1069.556 kb on + strand, within CA264_04620at 1069.667 kb on - strand, within CA264_04620at 1069.667 kb on - strand, within CA264_04620at 1069.806 kb on + strand, within CA264_04620at 1069.806 kb on + strand, within CA264_04620at 1069.848 kb on + strandat 1069.848 kb on + strandat 1069.848 kb on + strandat 1069.848 kb on + strandat 1069.849 kb on - strandat 1069.849 kb on - strandat 1069.862 kb on + strandat 1069.901 kb on + strandat 1069.901 kb on + strandat 1069.996 kb on + strand, within CA264_04625at 1070.056 kb on - strand, within CA264_04625at 1070.201 kb on - strand, within CA264_04625at 1070.280 kb on + strand, within CA264_04625at 1070.283 kb on - strand, within CA264_04625at 1070.338 kb on - strand, within CA264_04625at 1070.392 kb on + strand, within CA264_04625at 1070.392 kb on + strand, within CA264_04625at 1070.392 kb on + strandat 1070.392 kb on + strand, within CA264_04625at 1070.393 kb on - strand, within CA264_04625at 1070.433 kb on + strand, within CA264_04625at 1070.465 kb on + strand, within CA264_04625at 1070.481 kb on - strand, within CA264_04625at 1070.481 kb on - strand, within CA264_04625at 1070.616 kb on - strandat 1070.624 kb on + strandat 1070.625 kb on - strandat 1070.646 kb on + strandat 1070.649 kb on - strandat 1070.649 kb on - strandat 1070.649 kb on - strandat 1070.690 kb on + strandat 1070.698 kb on + strandat 1070.699 kb on - strandat 1070.699 kb on - strandat 1070.707 kb on + strandat 1070.727 kb on + strandat 1070.793 kb on + strandat 1070.830 kb on + strandat 1070.831 kb on - strandat 1070.883 kb on + strandat 1070.938 kb on - strandat 1070.959 kb on + strandat 1070.992 kb on + strandat 1070.993 kb on - strandat 1071.017 kb on - strandat 1071.023 kb on - strandat 1071.023 kb on - strandat 1071.037 kb on - strandat 1071.054 kb on - strand, within CA264_04630at 1071.231 kb on + strand, within CA264_04630at 1071.251 kb on - strand, within CA264_04630at 1071.289 kb on + strand, within CA264_04630at 1071.289 kb on + strand, within CA264_04630at 1071.290 kb on - strand, within CA264_04630at 1071.290 kb on - strand, within CA264_04630at 1071.291 kb on + strand, within CA264_04630at 1071.291 kb on + strand, within CA264_04630at 1071.292 kb on - strand, within CA264_04630at 1071.292 kb on - strand, within CA264_04630at 1071.296 kb on - strand, within CA264_04630at 1071.296 kb on - strand, within CA264_04630at 1071.296 kb on - strand, within CA264_04630at 1071.296 kb on - strand, within CA264_04630at 1071.383 kb on + strand, within CA264_04630at 1071.384 kb on - strand, within CA264_04630at 1071.439 kb on - strand, within CA264_04630at 1071.483 kb on + strand, within CA264_04630at 1071.484 kb on - strand, within CA264_04630at 1071.484 kb on - strand, within CA264_04630at 1071.513 kb on + strand, within CA264_04630at 1071.565 kb on - strand, within CA264_04630

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.58 mg/ml
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1,069,053 - -2.3
1,069,053 - -1.9
1,069,064 + -0.3
1,069,065 - -0.9
1,069,086 + -0.0
1,069,090 + +1.6
1,069,090 + +0.0
1,069,113 + +0.3
1,069,114 - +0.6
1,069,123 - -1.1
1,069,135 + -0.1
1,069,137 + -0.1
1,069,138 - -0.2
1,069,147 - -0.1
1,069,149 - +0.9
1,069,152 - -0.3
1,069,153 + -0.1
1,069,249 + -0.4
1,069,272 - -0.3
1,069,313 + -0.9
1,069,314 - -0.6
1,069,355 - CA264_04620 0.16 +0.2
1,069,430 + CA264_04620 0.27 -0.2
1,069,496 - CA264_04620 0.37 -0.1
1,069,542 - CA264_04620 0.44 -0.9
1,069,556 + CA264_04620 0.46 +0.9
1,069,667 - CA264_04620 0.63 -0.1
1,069,667 - CA264_04620 0.63 +0.1
1,069,806 + CA264_04620 0.84 -1.9
1,069,806 + CA264_04620 0.84 -0.8
1,069,848 + -0.0
1,069,848 + -0.4
1,069,848 + -0.3
1,069,848 + +0.4
1,069,849 - -0.9
1,069,849 - +0.3
1,069,862 + -1.3
1,069,901 + -0.6
1,069,901 + +0.3
1,069,996 + CA264_04625 0.10 -0.1
1,070,056 - CA264_04625 0.19 -0.5
1,070,201 - CA264_04625 0.39 -0.3
1,070,280 + CA264_04625 0.51 -0.4
1,070,283 - CA264_04625 0.51 +1.3
1,070,338 - CA264_04625 0.59 -0.8
1,070,392 + CA264_04625 0.67 -0.8
1,070,392 + CA264_04625 0.67 +0.1
1,070,392 + +0.3
1,070,392 + CA264_04625 0.67 +0.4
1,070,393 - CA264_04625 0.67 -0.3
1,070,433 + CA264_04625 0.73 +0.1
1,070,465 + CA264_04625 0.77 -0.4
1,070,481 - CA264_04625 0.79 -0.1
1,070,481 - CA264_04625 0.79 +0.9
1,070,616 - +0.3
1,070,624 + -0.7
1,070,625 - +0.1
1,070,646 + -0.1
1,070,649 - +0.3
1,070,649 - -1.1
1,070,649 - -0.9
1,070,690 + -0.4
1,070,698 + -0.1
1,070,699 - -2.3
1,070,699 - +0.6
1,070,707 + -1.6
1,070,727 + -2.4
1,070,793 + -0.6
1,070,830 + +0.9
1,070,831 - -1.8
1,070,883 + +0.3
1,070,938 - -0.1
1,070,959 + -1.4
1,070,992 + -0.3
1,070,993 - +0.2
1,071,017 - -0.7
1,071,023 - -0.1
1,071,023 - -2.1
1,071,037 - -0.3
1,071,054 - CA264_04630 0.10 -0.0
1,071,231 + CA264_04630 0.19 -0.0
1,071,251 - CA264_04630 0.21 +0.0
1,071,289 + CA264_04630 0.23 -0.6
1,071,289 + CA264_04630 0.23 -0.2
1,071,290 - CA264_04630 0.23 +0.2
1,071,290 - CA264_04630 0.23 +0.9
1,071,291 + CA264_04630 0.23 +0.9
1,071,291 + CA264_04630 0.23 -0.7
1,071,292 - CA264_04630 0.23 -1.1
1,071,292 - CA264_04630 0.23 +0.7
1,071,296 - CA264_04630 0.23 -0.6
1,071,296 - CA264_04630 0.23 -0.4
1,071,296 - CA264_04630 0.23 -0.7
1,071,296 - CA264_04630 0.23 -1.3
1,071,383 + CA264_04630 0.28 +0.9
1,071,384 - CA264_04630 0.28 -0.3
1,071,439 - CA264_04630 0.31 +0.2
1,071,483 + CA264_04630 0.33 +0.3
1,071,484 - CA264_04630 0.33 -0.5
1,071,484 - CA264_04630 0.33 +0.2
1,071,513 + CA264_04630 0.34 -0.5
1,071,565 - CA264_04630 0.37 -0.6

Or see this region's nucleotide sequence