Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02100

Experiment: m.b. benzoic 0.58 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02095 and CA264_02100 are separated by 120 nucleotidesCA264_02100 and CA264_02105 are separated by 119 nucleotidesCA264_02105 and CA264_02110 are separated by 257 nucleotides CA264_02095: CA264_02095 - AI-2E family transporter, at 483,248 to 484,306 _02095 CA264_02100: CA264_02100 - Clp protease ClpC, at 484,427 to 487,024 _02100 CA264_02105: CA264_02105 - hypothetical protein, at 487,144 to 487,746 _02105 CA264_02110: CA264_02110 - lauroyl acyltransferase, at 488,004 to 488,924 _02110 Position (kb) 484 485 486 487 488Strain fitness (log2 ratio) -2 -1 0 1 2 3at 483.567 kb on - strand, within CA264_02095at 483.607 kb on - strand, within CA264_02095at 483.675 kb on - strand, within CA264_02095at 483.676 kb on + strand, within CA264_02095at 483.677 kb on - strand, within CA264_02095at 483.755 kb on - strand, within CA264_02095at 483.755 kb on - strand, within CA264_02095at 483.767 kb on + strand, within CA264_02095at 483.768 kb on - strand, within CA264_02095at 483.768 kb on - strand, within CA264_02095at 483.811 kb on - strand, within CA264_02095at 483.833 kb on + strand, within CA264_02095at 483.834 kb on - strand, within CA264_02095at 483.837 kb on - strand, within CA264_02095at 483.844 kb on + strand, within CA264_02095at 483.845 kb on - strand, within CA264_02095at 483.846 kb on + strand, within CA264_02095at 483.950 kb on - strand, within CA264_02095at 483.951 kb on + strand, within CA264_02095at 483.952 kb on - strand, within CA264_02095at 483.952 kb on - strand, within CA264_02095at 484.022 kb on + strand, within CA264_02095at 484.023 kb on - strand, within CA264_02095at 484.054 kb on + strand, within CA264_02095at 484.132 kb on + strand, within CA264_02095at 484.132 kb on + strand, within CA264_02095at 484.132 kb on + strand, within CA264_02095at 484.132 kb on + strand, within CA264_02095at 484.132 kb on + strand, within CA264_02095at 484.305 kb on - strandat 484.319 kb on - strandat 484.414 kb on + strandat 484.415 kb on - strandat 484.421 kb on + strandat 484.422 kb on - strandat 487.027 kb on - strandat 487.027 kb on - strandat 487.028 kb on + strandat 487.029 kb on - strandat 487.031 kb on + strandat 487.031 kb on + strandat 487.031 kb on + strandat 487.032 kb on - strandat 487.033 kb on + strandat 487.034 kb on - strandat 487.042 kb on + strandat 487.110 kb on + strandat 487.179 kb on + strandat 487.228 kb on + strand, within CA264_02105at 487.236 kb on + strand, within CA264_02105at 487.236 kb on + strand, within CA264_02105at 487.279 kb on + strand, within CA264_02105at 487.279 kb on + strand, within CA264_02105at 487.280 kb on - strand, within CA264_02105at 487.369 kb on - strand, within CA264_02105at 487.374 kb on - strand, within CA264_02105at 487.374 kb on - strand, within CA264_02105at 487.427 kb on + strand, within CA264_02105at 487.442 kb on + strand, within CA264_02105at 487.443 kb on - strand, within CA264_02105at 487.463 kb on + strand, within CA264_02105at 487.526 kb on + strand, within CA264_02105at 487.526 kb on + strand, within CA264_02105at 487.566 kb on + strand, within CA264_02105at 487.600 kb on + strand, within CA264_02105at 487.652 kb on + strand, within CA264_02105at 487.724 kb on + strandat 487.724 kb on + strandat 487.781 kb on + strandat 487.781 kb on + strandat 487.784 kb on + strandat 487.864 kb on - strandat 487.868 kb on - strandat 487.922 kb on + strandat 487.947 kb on + strandat 487.978 kb on + strandat 487.978 kb on + strandat 487.979 kb on - strandat 488.023 kb on + strandat 488.024 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.58 mg/ml
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483,567 - CA264_02095 0.30 +1.0
483,607 - CA264_02095 0.34 -1.6
483,675 - CA264_02095 0.40 +0.3
483,676 + CA264_02095 0.40 -0.4
483,677 - CA264_02095 0.41 -0.0
483,755 - CA264_02095 0.48 -1.0
483,755 - CA264_02095 0.48 -0.0
483,767 + CA264_02095 0.49 +0.0
483,768 - CA264_02095 0.49 -0.3
483,768 - CA264_02095 0.49 -1.3
483,811 - CA264_02095 0.53 -0.4
483,833 + CA264_02095 0.55 -0.4
483,834 - CA264_02095 0.55 -0.0
483,837 - CA264_02095 0.56 -0.3
483,844 + CA264_02095 0.56 +0.4
483,845 - CA264_02095 0.56 +0.8
483,846 + CA264_02095 0.56 +1.0
483,950 - CA264_02095 0.66 -0.7
483,951 + CA264_02095 0.66 -0.6
483,952 - CA264_02095 0.66 -0.6
483,952 - CA264_02095 0.66 +2.0
484,022 + CA264_02095 0.73 +0.4
484,023 - CA264_02095 0.73 -0.0
484,054 + CA264_02095 0.76 +0.6
484,132 + CA264_02095 0.83 +0.1
484,132 + CA264_02095 0.83 -0.6
484,132 + CA264_02095 0.83 +0.1
484,132 + CA264_02095 0.83 +0.3
484,132 + CA264_02095 0.83 +0.6
484,305 - +1.0
484,319 - -2.0
484,414 + -0.4
484,415 - +0.2
484,421 + +0.0
484,422 - +0.2
487,027 - +0.6
487,027 - +0.3
487,028 + -1.0
487,029 - -0.6
487,031 + +0.2
487,031 + -0.0
487,031 + +0.4
487,032 - +0.9
487,033 + +3.3
487,034 - +0.2
487,042 + -0.0
487,110 + -1.5
487,179 + -0.5
487,228 + CA264_02105 0.14 -0.3
487,236 + CA264_02105 0.15 -1.8
487,236 + CA264_02105 0.15 -1.0
487,279 + CA264_02105 0.22 -0.6
487,279 + CA264_02105 0.22 -1.5
487,280 - CA264_02105 0.23 -2.3
487,369 - CA264_02105 0.37 -1.8
487,374 - CA264_02105 0.38 -1.5
487,374 - CA264_02105 0.38 -1.0
487,427 + CA264_02105 0.47 -0.7
487,442 + CA264_02105 0.49 +1.6
487,443 - CA264_02105 0.50 -0.2
487,463 + CA264_02105 0.53 +1.7
487,526 + CA264_02105 0.63 +1.0
487,526 + CA264_02105 0.63 -0.5
487,566 + CA264_02105 0.70 +1.0
487,600 + CA264_02105 0.76 -0.4
487,652 + CA264_02105 0.84 -0.3
487,724 + -1.2
487,724 + -0.7
487,781 + -0.6
487,781 + -1.0
487,784 + -1.2
487,864 - -2.5
487,868 - +2.0
487,922 + -1.3
487,947 + -1.5
487,978 + -0.1
487,978 + -1.5
487,979 - -1.2
488,023 + -0.9
488,024 - -1.5

Or see this region's nucleotide sequence