Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00865

Experiment: m.b. benzoic 0.58 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_00860 and CA264_00865 are separated by 276 nucleotidesCA264_00865 and CA264_00870 are separated by 75 nucleotides CA264_00860: CA264_00860 - CPBP family intramembrane metalloprotease, at 183,058 to 183,930 _00860 CA264_00865: CA264_00865 - dihydroorotate dehydrogenase (quinone), at 184,207 to 185,238 _00865 CA264_00870: CA264_00870 - DNA translocase FtsK, at 185,314 to 187,944 _00870 Position (kb) 184 185 186Strain fitness (log2 ratio) -2 -1 0 1at 183.236 kb on + strand, within CA264_00860at 183.251 kb on - strand, within CA264_00860at 183.251 kb on - strand, within CA264_00860at 183.255 kb on + strand, within CA264_00860at 183.256 kb on - strand, within CA264_00860at 183.281 kb on - strand, within CA264_00860at 183.302 kb on + strand, within CA264_00860at 183.303 kb on - strand, within CA264_00860at 183.347 kb on + strand, within CA264_00860at 183.347 kb on + strand, within CA264_00860at 183.355 kb on + strand, within CA264_00860at 183.385 kb on - strand, within CA264_00860at 183.385 kb on - strand, within CA264_00860at 183.385 kb on - strand, within CA264_00860at 183.386 kb on + strand, within CA264_00860at 183.386 kb on + strand, within CA264_00860at 183.387 kb on - strand, within CA264_00860at 183.398 kb on + strand, within CA264_00860at 183.398 kb on + strand, within CA264_00860at 183.437 kb on + strand, within CA264_00860at 183.516 kb on - strand, within CA264_00860at 183.524 kb on + strand, within CA264_00860at 183.525 kb on - strand, within CA264_00860at 183.525 kb on - strand, within CA264_00860at 183.562 kb on - strand, within CA264_00860at 183.562 kb on - strand, within CA264_00860at 183.612 kb on + strand, within CA264_00860at 183.676 kb on + strand, within CA264_00860at 183.677 kb on - strand, within CA264_00860at 183.677 kb on - strand, within CA264_00860at 183.680 kb on - strand, within CA264_00860at 183.722 kb on + strand, within CA264_00860at 183.745 kb on - strand, within CA264_00860at 183.749 kb on + strand, within CA264_00860at 183.749 kb on + strand, within CA264_00860at 183.750 kb on - strand, within CA264_00860at 183.819 kb on + strand, within CA264_00860at 183.819 kb on + strand, within CA264_00860at 183.819 kb on + strand, within CA264_00860at 183.830 kb on - strand, within CA264_00860at 183.848 kb on + strandat 183.848 kb on + strandat 183.854 kb on + strandat 183.862 kb on - strandat 183.937 kb on + strandat 183.938 kb on - strandat 183.955 kb on - strandat 183.960 kb on + strandat 183.991 kb on + strandat 183.998 kb on - strandat 183.998 kb on - strandat 183.998 kb on - strandat 183.998 kb on - strandat 183.999 kb on + strandat 183.999 kb on + strandat 183.999 kb on + strandat 184.000 kb on - strandat 184.023 kb on + strandat 184.070 kb on + strandat 184.070 kb on + strandat 184.070 kb on + strandat 184.074 kb on + strandat 184.074 kb on + strandat 184.075 kb on - strandat 184.149 kb on + strandat 184.149 kb on + strandat 184.150 kb on - strandat 184.150 kb on - strandat 184.150 kb on - strandat 184.150 kb on - strandat 184.156 kb on + strandat 184.157 kb on - strandat 184.157 kb on - strandat 184.157 kb on - strandat 184.161 kb on + strandat 184.161 kb on + strandat 184.162 kb on - strandat 184.170 kb on + strandat 184.170 kb on + strandat 184.186 kb on + strandat 184.186 kb on + strandat 184.187 kb on - strandat 184.188 kb on + strandat 184.189 kb on - strandat 184.189 kb on - strandat 184.193 kb on + strandat 184.201 kb on + strandat 184.264 kb on + strandat 184.264 kb on + strandat 184.264 kb on + strandat 184.335 kb on + strand, within CA264_00865at 184.377 kb on + strand, within CA264_00865at 184.685 kb on - strand, within CA264_00865at 184.685 kb on - strand, within CA264_00865at 184.691 kb on - strand, within CA264_00865at 184.724 kb on - strand, within CA264_00865at 185.182 kb on - strandat 185.205 kb on - strandat 185.241 kb on + strandat 185.241 kb on + strandat 185.241 kb on + strandat 185.241 kb on + strandat 185.242 kb on - strandat 185.297 kb on + strandat 185.297 kb on + strandat 185.301 kb on + strandat 185.475 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.58 mg/ml
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183,236 + CA264_00860 0.20 -0.9
183,251 - CA264_00860 0.22 -0.5
183,251 - CA264_00860 0.22 +0.4
183,255 + CA264_00860 0.23 -0.5
183,256 - CA264_00860 0.23 -0.8
183,281 - CA264_00860 0.26 -0.9
183,302 + CA264_00860 0.28 -0.2
183,303 - CA264_00860 0.28 +0.5
183,347 + CA264_00860 0.33 +0.3
183,347 + CA264_00860 0.33 -0.4
183,355 + CA264_00860 0.34 +0.2
183,385 - CA264_00860 0.37 -0.5
183,385 - CA264_00860 0.37 -0.5
183,385 - CA264_00860 0.37 -1.4
183,386 + CA264_00860 0.38 +0.1
183,386 + CA264_00860 0.38 +1.3
183,387 - CA264_00860 0.38 +1.1
183,398 + CA264_00860 0.39 +0.1
183,398 + CA264_00860 0.39 -1.2
183,437 + CA264_00860 0.43 -0.1
183,516 - CA264_00860 0.52 +0.2
183,524 + CA264_00860 0.53 -0.1
183,525 - CA264_00860 0.53 -0.5
183,525 - CA264_00860 0.53 -0.0
183,562 - CA264_00860 0.58 +0.3
183,562 - CA264_00860 0.58 +0.4
183,612 + CA264_00860 0.63 +0.6
183,676 + CA264_00860 0.71 -0.5
183,677 - CA264_00860 0.71 +0.2
183,677 - CA264_00860 0.71 -0.9
183,680 - CA264_00860 0.71 +1.1
183,722 + CA264_00860 0.76 -0.3
183,745 - CA264_00860 0.79 +0.1
183,749 + CA264_00860 0.79 -0.6
183,749 + CA264_00860 0.79 -1.6
183,750 - CA264_00860 0.79 -0.2
183,819 + CA264_00860 0.87 -1.5
183,819 + CA264_00860 0.87 +1.1
183,819 + CA264_00860 0.87 -1.9
183,830 - CA264_00860 0.88 +1.1
183,848 + +0.7
183,848 + -0.5
183,854 + -0.3
183,862 - +0.1
183,937 + -0.2
183,938 - +0.7
183,955 - -1.1
183,960 + +0.2
183,991 + -0.6
183,998 - +1.4
183,998 - +1.1
183,998 - +0.9
183,998 - -0.0
183,999 + -0.7
183,999 + -0.1
183,999 + -2.0
184,000 - +0.3
184,023 + +0.2
184,070 + +0.1
184,070 + +0.0
184,070 + +1.5
184,074 + -0.1
184,074 + -0.3
184,075 - +1.1
184,149 + -1.7
184,149 + -0.1
184,150 - +0.2
184,150 - -0.8
184,150 - +1.2
184,150 - -0.7
184,156 + +0.0
184,157 - +0.9
184,157 - -0.2
184,157 - -0.3
184,161 + -0.5
184,161 + -0.7
184,162 - +0.2
184,170 + +1.1
184,170 + +0.8
184,186 + -0.8
184,186 + -1.0
184,187 - -0.8
184,188 + -2.0
184,189 - -0.3
184,189 - -0.5
184,193 + -1.6
184,201 + +1.2
184,264 + +0.5
184,264 + +0.3
184,264 + +0.1
184,335 + CA264_00865 0.12 -2.1
184,377 + CA264_00865 0.16 -0.0
184,685 - CA264_00865 0.46 -0.1
184,685 - CA264_00865 0.46 -1.2
184,691 - CA264_00865 0.47 +0.5
184,724 - CA264_00865 0.50 -0.8
185,182 - -0.9
185,205 - +0.9
185,241 + -0.5
185,241 + -0.4
185,241 + -0.4
185,241 + -0.4
185,242 - -1.5
185,297 + -1.5
185,297 + -0.0
185,301 + -0.2
185,475 - +0.0

Or see this region's nucleotide sequence