Experiment: Adenine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS22320 and ABID97_RS22325 are separated by 17 nucleotides ABID97_RS22325 and ABID97_RS22330 are separated by 33 nucleotides ABID97_RS22330 and ABID97_RS22335 are separated by 9 nucleotides
ABID97_RS22320: ABID97_RS22320 - glyoxylate carboligase, at 4,624,292 to 4,626,085
_RS22320
ABID97_RS22325: ABID97_RS22325 - hydroxypyruvate isomerase, at 4,626,103 to 4,626,888
_RS22325
ABID97_RS22330: ABID97_RS22330 - 2-hydroxy-3-oxopropionate reductase, at 4,626,922 to 4,627,830
_RS22330
ABID97_RS22335: ABID97_RS22335 - NAD(P)/FAD-dependent oxidoreductase, at 4,627,840 to 4,629,180
_RS22335
Position (kb) 4626
4627
4628 Strain fitness (log2 ratio) -1
0
1 at 4626.203 kb on - strand, within ABID97_RS22325 at 4626.640 kb on + strand, within ABID97_RS22325 at 4626.640 kb on + strand, within ABID97_RS22325 at 4626.763 kb on + strand, within ABID97_RS22325 at 4626.824 kb on - strand at 4627.285 kb on + strand, within ABID97_RS22330 at 4627.639 kb on - strand, within ABID97_RS22330 at 4627.934 kb on + strand at 4627.934 kb on + strand at 4627.934 kb on + strand at 4627.935 kb on - strand at 4627.935 kb on - strand at 4627.937 kb on + strand at 4627.937 kb on + strand at 4627.938 kb on - strand at 4627.938 kb on - strand at 4628.084 kb on + strand, within ABID97_RS22335 at 4628.085 kb on - strand, within ABID97_RS22335 at 4628.179 kb on + strand, within ABID97_RS22335 at 4628.225 kb on + strand, within ABID97_RS22335 at 4628.225 kb on + strand, within ABID97_RS22335 at 4628.227 kb on + strand, within ABID97_RS22335 at 4628.227 kb on + strand, within ABID97_RS22335 at 4628.227 kb on + strand, within ABID97_RS22335 at 4628.228 kb on - strand, within ABID97_RS22335 at 4628.261 kb on + strand, within ABID97_RS22335 at 4628.261 kb on + strand, within ABID97_RS22335 at 4628.318 kb on + strand, within ABID97_RS22335 at 4628.319 kb on - strand, within ABID97_RS22335 at 4628.444 kb on + strand, within ABID97_RS22335 at 4628.498 kb on + strand, within ABID97_RS22335 at 4628.498 kb on + strand, within ABID97_RS22335 at 4628.586 kb on - strand, within ABID97_RS22335 at 4628.586 kb on - strand, within ABID97_RS22335
Per-strain Table
Position Strand Gene LocusTag Fraction Adenine (C) remove 4,626,203 - ABID97_RS22325 0.13 -0.2 4,626,640 + ABID97_RS22325 0.68 -0.1 4,626,640 + ABID97_RS22325 0.68 +1.2 4,626,763 + ABID97_RS22325 0.84 -0.3 4,626,824 - +1.3 4,627,285 + ABID97_RS22330 0.40 -1.7 4,627,639 - ABID97_RS22330 0.79 -0.6 4,627,934 + +0.5 4,627,934 + +0.6 4,627,934 + +0.6 4,627,935 - +0.3 4,627,935 - -0.5 4,627,937 + +0.2 4,627,937 + +0.8 4,627,938 - +0.1 4,627,938 - +0.2 4,628,084 + ABID97_RS22335 0.18 -0.3 4,628,085 - ABID97_RS22335 0.18 +0.7 4,628,179 + ABID97_RS22335 0.25 +0.1 4,628,225 + ABID97_RS22335 0.29 +0.2 4,628,225 + ABID97_RS22335 0.29 +0.1 4,628,227 + ABID97_RS22335 0.29 -0.5 4,628,227 + ABID97_RS22335 0.29 +0.4 4,628,227 + ABID97_RS22335 0.29 +0.7 4,628,228 - ABID97_RS22335 0.29 +0.2 4,628,261 + ABID97_RS22335 0.31 -0.0 4,628,261 + ABID97_RS22335 0.31 -0.0 4,628,318 + ABID97_RS22335 0.36 +0.7 4,628,319 - ABID97_RS22335 0.36 -0.3 4,628,444 + ABID97_RS22335 0.45 +0.5 4,628,498 + ABID97_RS22335 0.49 -0.8 4,628,498 + ABID97_RS22335 0.49 -0.2 4,628,586 - ABID97_RS22335 0.56 -0.0 4,628,586 - ABID97_RS22335 0.56 +0.2
Or see this region's nucleotide sequence