Experiment: Adenine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS22255 and ABID97_RS22260 are separated by 60 nucleotides ABID97_RS22260 and ABID97_RS22265 are separated by 140 nucleotides ABID97_RS22265 and ABID97_RS22270 are separated by 6 nucleotides
ABID97_RS22255: ABID97_RS22255 - aspartate/glutamate racemase family protein, at 4,611,622 to 4,612,362
_RS22255
ABID97_RS22260: ABID97_RS22260 - GntR family transcriptional regulator, at 4,612,423 to 4,613,181
_RS22260
ABID97_RS22265: ABID97_RS22265 - nucleobase:cation symporter-2 family protein, at 4,613,322 to 4,614,818
_RS22265
ABID97_RS22270: ABID97_RS22270 - aldo/keto reductase, at 4,614,825 to 4,615,682
_RS22270
Position (kb) 4613
4614
4615 Strain fitness (log2 ratio) -1
0
1 at 4612.804 kb on + strand, within ABID97_RS22260 at 4612.805 kb on - strand, within ABID97_RS22260 at 4612.990 kb on + strand, within ABID97_RS22260 at 4612.990 kb on + strand, within ABID97_RS22260 at 4612.991 kb on - strand, within ABID97_RS22260 at 4613.219 kb on + strand at 4613.219 kb on + strand at 4613.219 kb on + strand at 4613.427 kb on + strand at 4613.427 kb on + strand at 4613.428 kb on - strand at 4613.964 kb on + strand, within ABID97_RS22265 at 4613.965 kb on - strand, within ABID97_RS22265 at 4614.031 kb on - strand, within ABID97_RS22265 at 4614.117 kb on + strand, within ABID97_RS22265 at 4614.423 kb on + strand, within ABID97_RS22265 at 4614.424 kb on - strand, within ABID97_RS22265 at 4615.087 kb on + strand, within ABID97_RS22270 at 4615.088 kb on - strand, within ABID97_RS22270 at 4615.165 kb on + strand, within ABID97_RS22270 at 4615.166 kb on - strand, within ABID97_RS22270 at 4615.166 kb on - strand, within ABID97_RS22270 at 4615.339 kb on + strand, within ABID97_RS22270 at 4615.340 kb on - strand, within ABID97_RS22270
Per-strain Table
Position Strand Gene LocusTag Fraction Adenine (C) remove 4,612,804 + ABID97_RS22260 0.50 +0.3 4,612,805 - ABID97_RS22260 0.50 -1.3 4,612,990 + ABID97_RS22260 0.75 +0.3 4,612,990 + ABID97_RS22260 0.75 -0.2 4,612,991 - ABID97_RS22260 0.75 -0.2 4,613,219 + +0.0 4,613,219 + +0.2 4,613,219 + -0.2 4,613,427 + -0.5 4,613,427 + -0.1 4,613,428 - -0.1 4,613,964 + ABID97_RS22265 0.43 +0.1 4,613,965 - ABID97_RS22265 0.43 +0.3 4,614,031 - ABID97_RS22265 0.47 +0.2 4,614,117 + ABID97_RS22265 0.53 -0.3 4,614,423 + ABID97_RS22265 0.74 -0.2 4,614,424 - ABID97_RS22265 0.74 -0.1 4,615,087 + ABID97_RS22270 0.31 +0.2 4,615,088 - ABID97_RS22270 0.31 +1.6 4,615,165 + ABID97_RS22270 0.40 +0.4 4,615,166 - ABID97_RS22270 0.40 -0.3 4,615,166 - ABID97_RS22270 0.40 +0.7 4,615,339 + ABID97_RS22270 0.60 +0.0 4,615,340 - ABID97_RS22270 0.60 +0.3
Or see this region's nucleotide sequence