Experiment: Adenine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS22185 and ABID97_RS22190 are separated by 223 nucleotides ABID97_RS22190 and ABID97_RS22195 are separated by 53 nucleotides ABID97_RS22195 and ABID97_RS22200 are separated by 2 nucleotides ABID97_RS22200 and ABID97_RS22205 are separated by 79 nucleotides
ABID97_RS22185: ABID97_RS22185 - urate hydroxylase PuuD, at 4,597,204 to 4,598,409
_RS22185
ABID97_RS22190: ABID97_RS22190 - xanthine dehydrogenase accessory protein XdhC, at 4,598,633 to 4,599,439
_RS22190
ABID97_RS22195: ABID97_RS22195 - hypothetical protein, at 4,599,493 to 4,599,996
_RS22195
ABID97_RS22200: ABID97_RS22200 - hydroxyisourate hydrolase, at 4,599,999 to 4,600,349
_RS22200
ABID97_RS22205: ABID97_RS22205 - GntR family transcriptional regulator, at 4,600,429 to 4,601,103
_RS22205
Position (kb) 4598
4599
4600 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 4597.646 kb on + strand, within ABID97_RS22185 at 4597.647 kb on - strand, within ABID97_RS22185 at 4597.670 kb on + strand, within ABID97_RS22185 at 4597.670 kb on + strand, within ABID97_RS22185 at 4597.670 kb on + strand, within ABID97_RS22185 at 4597.712 kb on + strand, within ABID97_RS22185 at 4597.713 kb on - strand, within ABID97_RS22185 at 4597.713 kb on - strand, within ABID97_RS22185 at 4597.997 kb on + strand at 4597.997 kb on + strand, within ABID97_RS22185 at 4598.084 kb on + strand, within ABID97_RS22185 at 4598.084 kb on + strand, within ABID97_RS22185 at 4598.085 kb on - strand, within ABID97_RS22185 at 4598.085 kb on - strand, within ABID97_RS22185 at 4598.105 kb on + strand, within ABID97_RS22185 at 4598.115 kb on + strand, within ABID97_RS22185 at 4598.115 kb on + strand, within ABID97_RS22185 at 4598.115 kb on + strand, within ABID97_RS22185 at 4598.148 kb on - strand, within ABID97_RS22185 at 4598.148 kb on - strand, within ABID97_RS22185 at 4598.219 kb on + strand, within ABID97_RS22185 at 4598.220 kb on - strand, within ABID97_RS22185 at 4598.322 kb on - strand at 4598.322 kb on - strand at 4598.396 kb on + strand at 4598.396 kb on + strand at 4598.399 kb on + strand at 4598.399 kb on + strand at 4598.400 kb on - strand at 4598.494 kb on - strand at 4598.494 kb on - strand at 4598.571 kb on + strand at 4598.572 kb on - strand at 4599.446 kb on + strand at 4599.480 kb on + strand at 4599.480 kb on + strand at 4599.481 kb on - strand at 4599.482 kb on + strand at 4599.507 kb on + strand at 4599.725 kb on - strand, within ABID97_RS22195 at 4600.054 kb on + strand, within ABID97_RS22200 at 4600.055 kb on - strand, within ABID97_RS22200 at 4600.202 kb on - strand, within ABID97_RS22200 at 4600.279 kb on + strand, within ABID97_RS22200 at 4600.279 kb on + strand, within ABID97_RS22200 at 4600.279 kb on + strand, within ABID97_RS22200 at 4600.280 kb on - strand, within ABID97_RS22200 at 4600.280 kb on - strand, within ABID97_RS22200 at 4600.425 kb on + strand at 4600.425 kb on + strand at 4600.425 kb on + strand at 4600.426 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Adenine (C) remove 4,597,646 + ABID97_RS22185 0.37 -2.0 4,597,647 - ABID97_RS22185 0.37 -3.8 4,597,670 + ABID97_RS22185 0.39 -2.2 4,597,670 + ABID97_RS22185 0.39 -0.7 4,597,670 + ABID97_RS22185 0.39 -2.8 4,597,712 + ABID97_RS22185 0.42 -2.1 4,597,713 - ABID97_RS22185 0.42 -1.2 4,597,713 - ABID97_RS22185 0.42 -1.0 4,597,997 + +3.4 4,597,997 + ABID97_RS22185 0.66 -2.2 4,598,084 + ABID97_RS22185 0.73 -2.2 4,598,084 + ABID97_RS22185 0.73 -1.6 4,598,085 - ABID97_RS22185 0.73 -2.5 4,598,085 - ABID97_RS22185 0.73 -2.5 4,598,105 + ABID97_RS22185 0.75 -1.6 4,598,115 + ABID97_RS22185 0.76 -2.1 4,598,115 + ABID97_RS22185 0.76 -2.5 4,598,115 + ABID97_RS22185 0.76 -1.5 4,598,148 - ABID97_RS22185 0.78 -2.4 4,598,148 - ABID97_RS22185 0.78 -2.4 4,598,219 + ABID97_RS22185 0.84 -0.8 4,598,220 - ABID97_RS22185 0.84 -2.0 4,598,322 - -2.8 4,598,322 - -3.9 4,598,396 + -3.4 4,598,396 + -0.5 4,598,399 + -0.9 4,598,399 + -1.0 4,598,400 - -0.3 4,598,494 - -1.7 4,598,494 - -2.1 4,598,571 + -0.2 4,598,572 - -1.3 4,599,446 + -1.4 4,599,480 + -0.3 4,599,480 + -1.0 4,599,481 - -0.1 4,599,482 + +0.8 4,599,507 + +0.2 4,599,725 - ABID97_RS22195 0.46 -0.1 4,600,054 + ABID97_RS22200 0.16 -3.1 4,600,055 - ABID97_RS22200 0.16 -3.3 4,600,202 - ABID97_RS22200 0.58 -2.5 4,600,279 + ABID97_RS22200 0.80 -3.7 4,600,279 + ABID97_RS22200 0.80 -2.6 4,600,279 + ABID97_RS22200 0.80 -3.2 4,600,280 - ABID97_RS22200 0.80 -3.6 4,600,280 - ABID97_RS22200 0.80 -5.0 4,600,425 + -0.9 4,600,425 + -1.5 4,600,425 + -2.4 4,600,426 - +0.1
Or see this region's nucleotide sequence