Strain Fitness in Variovorax sp. OAS795 around ABID97_RS22115

Experiment: Adenine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS22110 and ABID97_RS22115 are separated by 78 nucleotidesABID97_RS22115 and ABID97_RS22120 are separated by 123 nucleotides ABID97_RS22110: ABID97_RS22110 - NCS2 family permease, at 4,575,881 to 4,577,287 _RS22110 ABID97_RS22115: ABID97_RS22115 - LysR family transcriptional regulator, at 4,577,366 to 4,578,364 _RS22115 ABID97_RS22120: ABID97_RS22120 - xanthine dehydrogenase molybdopterin binding subunit, at 4,578,488 to 4,580,938 _RS22120 Position (kb) 4577 4578 4579Strain fitness (log2 ratio) -3 -2 -1 0 1at 4576.481 kb on + strand, within ABID97_RS22110at 4576.482 kb on - strand, within ABID97_RS22110at 4576.482 kb on - strand, within ABID97_RS22110at 4576.482 kb on - strand, within ABID97_RS22110at 4576.917 kb on + strand, within ABID97_RS22110at 4576.918 kb on - strand, within ABID97_RS22110at 4576.927 kb on - strand, within ABID97_RS22110at 4577.085 kb on + strand, within ABID97_RS22110at 4577.086 kb on - strand, within ABID97_RS22110at 4577.309 kb on + strandat 4577.309 kb on + strandat 4577.310 kb on - strandat 4577.526 kb on + strand, within ABID97_RS22115at 4577.527 kb on - strand, within ABID97_RS22115at 4577.529 kb on + strand, within ABID97_RS22115at 4577.529 kb on + strand, within ABID97_RS22115at 4577.529 kb on + strand, within ABID97_RS22115at 4577.530 kb on - strand, within ABID97_RS22115at 4577.530 kb on - strand, within ABID97_RS22115at 4577.937 kb on + strand, within ABID97_RS22115at 4578.255 kb on + strand, within ABID97_RS22115at 4578.255 kb on + strand, within ABID97_RS22115at 4578.255 kb on + strand, within ABID97_RS22115at 4578.256 kb on - strand, within ABID97_RS22115at 4578.442 kb on + strandat 4578.738 kb on + strand, within ABID97_RS22120at 4578.738 kb on + strand, within ABID97_RS22120at 4578.739 kb on - strand, within ABID97_RS22120at 4578.963 kb on + strand, within ABID97_RS22120at 4578.963 kb on + strand, within ABID97_RS22120at 4578.963 kb on + strand, within ABID97_RS22120at 4578.969 kb on + strand, within ABID97_RS22120at 4578.970 kb on - strand, within ABID97_RS22120at 4579.023 kb on + strand, within ABID97_RS22120at 4579.024 kb on - strand, within ABID97_RS22120

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (C)
remove
4,576,481 + ABID97_RS22110 0.43 -0.4
4,576,482 - ABID97_RS22110 0.43 -1.6
4,576,482 - ABID97_RS22110 0.43 -1.2
4,576,482 - ABID97_RS22110 0.43 -2.1
4,576,917 + ABID97_RS22110 0.74 -1.6
4,576,918 - ABID97_RS22110 0.74 -1.4
4,576,927 - ABID97_RS22110 0.74 -1.7
4,577,085 + ABID97_RS22110 0.86 -1.5
4,577,086 - ABID97_RS22110 0.86 -2.1
4,577,309 + -1.5
4,577,309 + +1.2
4,577,310 - -1.3
4,577,526 + ABID97_RS22115 0.16 -2.5
4,577,527 - ABID97_RS22115 0.16 -3.5
4,577,529 + ABID97_RS22115 0.16 -0.1
4,577,529 + ABID97_RS22115 0.16 -1.7
4,577,529 + ABID97_RS22115 0.16 -1.7
4,577,530 - ABID97_RS22115 0.16 -2.9
4,577,530 - ABID97_RS22115 0.16 -1.2
4,577,937 + ABID97_RS22115 0.57 -2.6
4,578,255 + ABID97_RS22115 0.89 -1.2
4,578,255 + ABID97_RS22115 0.89 -1.8
4,578,255 + ABID97_RS22115 0.89 -0.8
4,578,256 - ABID97_RS22115 0.89 +0.0
4,578,442 + -1.9
4,578,738 + ABID97_RS22120 0.10 -2.9
4,578,738 + ABID97_RS22120 0.10 -0.9
4,578,739 - ABID97_RS22120 0.10 -3.6
4,578,963 + ABID97_RS22120 0.19 -2.5
4,578,963 + ABID97_RS22120 0.19 -1.8
4,578,963 + ABID97_RS22120 0.19 -1.8
4,578,969 + ABID97_RS22120 0.20 +0.2
4,578,970 - ABID97_RS22120 0.20 -3.5
4,579,023 + ABID97_RS22120 0.22 -2.4
4,579,024 - ABID97_RS22120 0.22 -0.5

Or see this region's nucleotide sequence