Strain Fitness in Variovorax sp. OAS795 around ABID97_RS19485

Experiment: Adenine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS19480 and ABID97_RS19485 are separated by 105 nucleotidesABID97_RS19485 and ABID97_RS19490 are separated by 144 nucleotides ABID97_RS19480: ABID97_RS19480 - LysR family transcriptional regulator, at 4,020,799 to 4,021,743 _RS19480 ABID97_RS19485: ABID97_RS19485 - CoA-acylating methylmalonate-semialdehyde dehydrogenase, at 4,021,849 to 4,023,357 _RS19485 ABID97_RS19490: ABID97_RS19490 - class I SAM-dependent methyltransferase, at 4,023,502 to 4,024,347 _RS19490 Position (kb) 4021 4022 4023 4024Strain fitness (log2 ratio) -2 -1 0 1 2at 4020.890 kb on - strandat 4020.896 kb on + strand, within ABID97_RS19480at 4021.214 kb on + strand, within ABID97_RS19480at 4021.671 kb on - strandat 4021.790 kb on + strandat 4022.016 kb on + strand, within ABID97_RS19485at 4022.545 kb on + strand, within ABID97_RS19485at 4022.546 kb on - strand, within ABID97_RS19485at 4022.546 kb on - strand, within ABID97_RS19485at 4022.551 kb on + strand, within ABID97_RS19485at 4022.855 kb on - strand, within ABID97_RS19485at 4022.855 kb on - strand, within ABID97_RS19485at 4022.998 kb on + strand, within ABID97_RS19485at 4022.998 kb on + strand, within ABID97_RS19485at 4022.998 kb on + strand, within ABID97_RS19485at 4023.250 kb on + strandat 4023.274 kb on + strandat 4023.356 kb on - strandat 4023.356 kb on - strandat 4023.434 kb on - strandat 4023.691 kb on + strand, within ABID97_RS19490at 4023.691 kb on + strand, within ABID97_RS19490at 4023.692 kb on - strand, within ABID97_RS19490at 4023.797 kb on - strand, within ABID97_RS19490at 4024.009 kb on + strand, within ABID97_RS19490at 4024.009 kb on + strand, within ABID97_RS19490at 4024.010 kb on - strand, within ABID97_RS19490at 4024.225 kb on + strand, within ABID97_RS19490at 4024.226 kb on - strand, within ABID97_RS19490at 4024.303 kb on + strandat 4024.304 kb on - strandat 4024.346 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (C)
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4,020,890 - -0.2
4,020,896 + ABID97_RS19480 0.10 -0.3
4,021,214 + ABID97_RS19480 0.44 -0.0
4,021,671 - +0.6
4,021,790 + -1.1
4,022,016 + ABID97_RS19485 0.11 +0.3
4,022,545 + ABID97_RS19485 0.46 +0.2
4,022,546 - ABID97_RS19485 0.46 +0.6
4,022,546 - ABID97_RS19485 0.46 -0.2
4,022,551 + ABID97_RS19485 0.47 +0.8
4,022,855 - ABID97_RS19485 0.67 +2.1
4,022,855 - ABID97_RS19485 0.67 -0.1
4,022,998 + ABID97_RS19485 0.76 -0.3
4,022,998 + ABID97_RS19485 0.76 +0.3
4,022,998 + ABID97_RS19485 0.76 -0.2
4,023,250 + +0.2
4,023,274 + -0.6
4,023,356 - +1.5
4,023,356 - -0.0
4,023,434 - +0.6
4,023,691 + ABID97_RS19490 0.22 +0.8
4,023,691 + ABID97_RS19490 0.22 +0.4
4,023,692 - ABID97_RS19490 0.22 -0.0
4,023,797 - ABID97_RS19490 0.35 -0.8
4,024,009 + ABID97_RS19490 0.60 -0.7
4,024,009 + ABID97_RS19490 0.60 -0.0
4,024,010 - ABID97_RS19490 0.60 +0.0
4,024,225 + ABID97_RS19490 0.85 -2.5
4,024,226 - ABID97_RS19490 0.86 +0.0
4,024,303 + -0.6
4,024,304 - -0.3
4,024,346 - +0.2

Or see this region's nucleotide sequence