Strain Fitness in Variovorax sp. OAS795 around ABID97_RS17705

Experiment: Adenine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS17700 and ABID97_RS17705 are separated by 157 nucleotidesABID97_RS17705 and ABID97_RS17710 overlap by 4 nucleotides ABID97_RS17700: ABID97_RS17700 - sigma 54-interacting transcriptional regulator, at 3,655,976 to 3,657,517 _RS17700 ABID97_RS17705: ABID97_RS17705 - CerR family C-terminal domain-containing protein, at 3,657,675 to 3,658,400 _RS17705 ABID97_RS17710: ABID97_RS17710 - efflux transporter outer membrane subunit, at 3,658,397 to 3,659,890 _RS17710 Position (kb) 3657 3658 3659Strain fitness (log2 ratio) -3 -2 -1 0 1at 3657.196 kb on + strand, within ABID97_RS17700at 3657.197 kb on - strand, within ABID97_RS17700at 3657.506 kb on - strandat 3657.506 kb on - strandat 3657.664 kb on + strandat 3657.754 kb on - strand, within ABID97_RS17705at 3657.849 kb on + strand, within ABID97_RS17705at 3657.850 kb on - strand, within ABID97_RS17705at 3657.876 kb on + strand, within ABID97_RS17705at 3657.934 kb on - strand, within ABID97_RS17705at 3658.961 kb on + strand, within ABID97_RS17710at 3659.303 kb on + strand, within ABID97_RS17710at 3659.303 kb on + strand, within ABID97_RS17710at 3659.303 kb on + strand, within ABID97_RS17710

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (C)
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3,657,196 + ABID97_RS17700 0.79 +0.8
3,657,197 - ABID97_RS17700 0.79 -0.1
3,657,506 - +0.2
3,657,506 - +0.0
3,657,664 + -1.2
3,657,754 - ABID97_RS17705 0.11 -2.9
3,657,849 + ABID97_RS17705 0.24 +1.1
3,657,850 - ABID97_RS17705 0.24 +0.8
3,657,876 + ABID97_RS17705 0.28 +0.1
3,657,934 - ABID97_RS17705 0.36 +0.1
3,658,961 + ABID97_RS17710 0.38 -0.2
3,659,303 + ABID97_RS17710 0.61 -0.3
3,659,303 + ABID97_RS17710 0.61 +0.0
3,659,303 + ABID97_RS17710 0.61 +0.1

Or see this region's nucleotide sequence