Strain Fitness in Variovorax sp. OAS795 around ABID97_RS16620

Experiment: Adenine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS16615 and ABID97_RS16620 are separated by 151 nucleotidesABID97_RS16620 and ABID97_RS16625 are separated by 32 nucleotidesABID97_RS16625 and ABID97_RS16630 are separated by 46 nucleotides ABID97_RS16615: ABID97_RS16615 - ATP-dependent RNA helicase HrpA, at 3,435,343 to 3,439,212 _RS16615 ABID97_RS16620: ABID97_RS16620 - amino-acid N-acetyltransferase, at 3,439,364 to 3,440,710 _RS16620 ABID97_RS16625: ABID97_RS16625 - LysE family translocator, at 3,440,743 to 3,441,390 _RS16625 ABID97_RS16630: ABID97_RS16630 - succinyldiaminopimelate transaminase, at 3,441,437 to 3,442,657 _RS16630 Position (kb) 3439 3440 3441Strain fitness (log2 ratio) -1 0 1at 3438.614 kb on + strand, within ABID97_RS16615at 3438.614 kb on + strand, within ABID97_RS16615at 3438.614 kb on + strand, within ABID97_RS16615at 3438.614 kb on + strand, within ABID97_RS16615at 3438.614 kb on + strand, within ABID97_RS16615at 3438.614 kb on + strand, within ABID97_RS16615at 3438.614 kb on + strand, within ABID97_RS16615at 3438.615 kb on - strand, within ABID97_RS16615at 3438.615 kb on - strand, within ABID97_RS16615at 3438.615 kb on - strand, within ABID97_RS16615at 3438.615 kb on - strand, within ABID97_RS16615at 3440.724 kb on + strandat 3440.724 kb on + strandat 3440.986 kb on + strand, within ABID97_RS16625at 3440.987 kb on - strand, within ABID97_RS16625at 3440.987 kb on - strand, within ABID97_RS16625at 3441.143 kb on - strand, within ABID97_RS16625at 3441.143 kb on - strand, within ABID97_RS16625at 3441.205 kb on + strand, within ABID97_RS16625at 3441.205 kb on + strand, within ABID97_RS16625at 3441.206 kb on - strand, within ABID97_RS16625at 3441.259 kb on + strand, within ABID97_RS16625at 3441.260 kb on - strand, within ABID97_RS16625at 3441.260 kb on - strand, within ABID97_RS16625at 3441.260 kb on - strand, within ABID97_RS16625at 3441.370 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (C)
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3,438,614 + ABID97_RS16615 0.85 +0.5
3,438,614 + ABID97_RS16615 0.85 -0.1
3,438,614 + ABID97_RS16615 0.85 -0.4
3,438,614 + ABID97_RS16615 0.85 +0.1
3,438,614 + ABID97_RS16615 0.85 -0.3
3,438,614 + ABID97_RS16615 0.85 -0.3
3,438,614 + ABID97_RS16615 0.85 -0.2
3,438,615 - ABID97_RS16615 0.85 +1.5
3,438,615 - ABID97_RS16615 0.85 -0.2
3,438,615 - ABID97_RS16615 0.85 -0.0
3,438,615 - ABID97_RS16615 0.85 -0.2
3,440,724 + -0.3
3,440,724 + -0.2
3,440,986 + ABID97_RS16625 0.38 +0.1
3,440,987 - ABID97_RS16625 0.38 -0.2
3,440,987 - ABID97_RS16625 0.38 -0.2
3,441,143 - ABID97_RS16625 0.62 +0.1
3,441,143 - ABID97_RS16625 0.62 +0.1
3,441,205 + ABID97_RS16625 0.71 +0.3
3,441,205 + ABID97_RS16625 0.71 +0.0
3,441,206 - ABID97_RS16625 0.71 +0.5
3,441,259 + ABID97_RS16625 0.80 +0.1
3,441,260 - ABID97_RS16625 0.80 -0.2
3,441,260 - ABID97_RS16625 0.80 +0.4
3,441,260 - ABID97_RS16625 0.80 -0.7
3,441,370 + +0.3

Or see this region's nucleotide sequence